Literature DB >> 21831835

Multiple new site-specific recombinases for use in manipulating animal genomes.

Aljoscha Nern1, Barret D Pfeiffer, Karel Svoboda, Gerald M Rubin.   

Abstract

Site-specific recombinases have been used for two decades to manipulate the structure of animal genomes in highly predictable ways and have become major research tools. However, the small number of recombinases demonstrated to have distinct specificities, low toxicity, and sufficient activity to drive reactions to completion in animals has been a limitation. In this report we show that four recombinases derived from yeast--KD, B2, B3, and R--are highly active and nontoxic in Drosophila and that KD, B2, B3, and the widely used FLP recombinase have distinct target specificities. We also show that the KD and B3 recombinases are active in mice.

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Year:  2011        PMID: 21831835      PMCID: PMC3161616          DOI: 10.1073/pnas.1111704108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  58 in total

1.  High-efficiency deleter mice show that FLPe is an alternative to Cre-loxP.

Authors:  C I Rodríguez; F Buchholz; J Galloway; R Sequerra; J Kasper; R Ayala; A F Stewart; S M Dymecki
Journal:  Nat Genet       Date:  2000-06       Impact factor: 38.330

Review 2.  Cre recombinase: the universal reagent for genome tailoring.

Authors:  A Nagy
Journal:  Genesis       Date:  2000-02       Impact factor: 2.487

3.  Neuron-specific expression of therapeutic proteins: evaluation of different cellular promoters in recombinant adenoviral vectors.

Authors:  S Kügler; L Meyn; H Holzmüller; E Gerhardt; S Isenmann; J B Schulz; M Bähr
Journal:  Mol Cell Neurosci       Date:  2001-01       Impact factor: 4.314

4.  Cre recombinase expression can result in phenotypic aberrations in plants.

Authors:  Eric R Coppoolse; Marianne J de Vroomen; Dick Roelofs; Jaap Smit; Femke van Gennip; Bart J M Hersmus; H John J Nijkamp; Mark J J van Haaren
Journal:  Plant Mol Biol       Date:  2003-01       Impact factor: 4.076

5.  Stepwise manipulation of DNA specificity in Flp recombinase: progressively adapting Flp to individual and combinatorial mutations in its target site.

Authors:  Yuri Voziyanov; Jay H Konieczka; A Francis Stewart; Makkuni Jayaram
Journal:  J Mol Biol       Date:  2003-02-07       Impact factor: 5.469

6.  Cryptic boundaries in roof plate and choroid plexus identified by intersectional gene activation.

Authors:  Rajeshwar Awatramani; Philippe Soriano; Carolyn Rodriguez; Jia Jia Mai; Susan M Dymecki
Journal:  Nat Genet       Date:  2003-08-17       Impact factor: 38.330

7.  Operation of an efficient site-specific recombination system of Zygosaccharomyces rouxii in tobacco cells.

Authors:  H Onouchi; K Yokoi; C Machida; H Matsuzaki; Y Oshima; K Matsuoka; K Nakamura; Y Machida
Journal:  Nucleic Acids Res       Date:  1991-12-11       Impact factor: 16.971

8.  Reduction of Cre recombinase toxicity in proliferating Drosophila cells by estrogen-dependent activity regulation.

Authors:  D Heidmann; C F Lehner
Journal:  Dev Genes Evol       Date:  2001-09       Impact factor: 0.900

9.  Efficient gene transfer into the embryonic mouse brain using in vivo electroporation.

Authors:  T Saito; N Nakatsuji
Journal:  Dev Biol       Date:  2001-12-01       Impact factor: 3.582

10.  Illegitimate Cre-dependent chromosome rearrangements in transgenic mouse spermatids.

Authors:  E E Schmidt; D S Taylor; J R Prigge; S Barnett; M R Capecchi
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-05       Impact factor: 11.205

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  70 in total

Review 1.  Modeling human neurodegenerative diseases in transgenic systems.

Authors:  Miguel A Gama Sosa; Rita De Gasperi; Gregory A Elder
Journal:  Hum Genet       Date:  2011-12-14       Impact factor: 4.132

2.  SapTrap, a Toolkit for High-Throughput CRISPR/Cas9 Gene Modification in Caenorhabditis elegans.

Authors:  Matthew L Schwartz; Erik M Jorgensen
Journal:  Genetics       Date:  2016-02-02       Impact factor: 4.562

3.  Optimized tools for multicolor stochastic labeling reveal diverse stereotyped cell arrangements in the fly visual system.

Authors:  Aljoscha Nern; Barret D Pfeiffer; Gerald M Rubin
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-11       Impact factor: 11.205

Review 4.  Recent Advances in the Genetic Dissection of Neural Circuits in Drosophila.

Authors:  Chao Guo; Yufeng Pan; Zhefeng Gong
Journal:  Neurosci Bull       Date:  2019-05-22       Impact factor: 5.203

5.  Efficient photoactivatable Dre recombinase for cell type-specific spatiotemporal control of genome engineering in the mouse.

Authors:  Huiying Li; Qiansen Zhang; Yiran Gu; Yingyin Wu; Yamei Wang; Liren Wang; Shijie Feng; Yaqiang Hu; Yansen Zheng; Yongmei Li; Haifeng Ye; Bin Zhou; Longnian Lin; Mingyao Liu; Huaiyu Yang; Dali Li
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-14       Impact factor: 11.205

6.  Making Drosophila lineage-restricted drivers via patterned recombination in neuroblasts.

Authors:  Takeshi Awasaki; Chih-Fei Kao; Ying-Jou Lee; Ching-Po Yang; Yaling Huang; Barret D Pfeiffer; Haojiang Luan; Xiaotang Jing; Yu-Fen Huang; Yisheng He; Mark David Schroeder; Alexander Kuzin; Thomas Brody; Christopher T Zugates; Ward F Odenwald; Tzumin Lee
Journal:  Nat Neurosci       Date:  2014-02-23       Impact factor: 24.884

7.  Presynaptic Inhibition Selectively Gates Auditory Transmission to the Brainstem Startle Circuit.

Authors:  Kathryn M Tabor; Trevor S Smith; Mary Brown; Sadie A Bergeron; Kevin L Briggman; Harold A Burgess
Journal:  Curr Biol       Date:  2018-08-02       Impact factor: 10.834

Review 8.  Engineering Gene Circuits for Mammalian Cell-Based Applications.

Authors:  Simon Ausländer; Martin Fussenegger
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-07-01       Impact factor: 10.005

9.  A survey of 6,300 genomic fragments for cis-regulatory activity in the imaginal discs of Drosophila melanogaster.

Authors:  Aurélie Jory; Carlos Estella; Matt W Giorgianni; Matthew Slattery; Todd R Laverty; Gerald M Rubin; Richard S Mann
Journal:  Cell Rep       Date:  2012-10-12       Impact factor: 9.423

10.  Captured segment exchange: a strategy for custom engineering large genomic regions in Drosophila melanogaster.

Authors:  Jack R Bateman; Michael F Palopoli; Sarah T Dale; Jennifer E Stauffer; Anita L Shah; Justine E Johnson; Conor W Walsh; Hanna Flaten; Christine M Parsons
Journal:  Genetics       Date:  2012-11-12       Impact factor: 4.562

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