Literature DB >> 21827274

Advances in metabolite identification.

David S Wishart1.   

Abstract

One of the central challenges to metabolomics is metabolite identification. Regardless of whether one uses so-called 'targeted' or 'untargeted' metabolomics, eventually all paths lead to the requirement of identifying (and quantifying) certain key metabolites. Indeed, without metabolite identification, the results of any metabolomic analysis are biologically and chemically uninterpretable. Given the chemical diversity of most metabolomes and the character of most metabolomic data, metabolite identification is intrinsically difficult. Consequently a great deal of effort in metabolomics over the past decade has been focused on making metabolite identification better, faster and cheaper. This review describes some of the newly emerging techniques or technologies in metabolomics that are making metabolite identification easier and more robust. In particular, it focuses on advances in metabolite identification that have occurred over the past 2 to 3 years concerning the technologies, methodologies and software as applied to NMR, MS and separation science. The strengths and limitations of some of these approaches are discussed along with some of the important trends in metabolite identification.

Entities:  

Mesh:

Year:  2011        PMID: 21827274     DOI: 10.4155/bio.11.155

Source DB:  PubMed          Journal:  Bioanalysis        ISSN: 1757-6180            Impact factor:   2.681


  79 in total

1.  PyMS: a Python toolkit for processing of gas chromatography-mass spectrometry (GC-MS) data. Application and comparative study of selected tools.

Authors:  Sean O'Callaghan; David P De Souza; Andrew Isaac; Qiao Wang; Luke Hodkinson; Moshe Olshansky; Tim Erwin; Bill Appelbe; Dedreia L Tull; Ute Roessner; Antony Bacic; Malcolm J McConville; Vladimir A Likić
Journal:  BMC Bioinformatics       Date:  2012-05-30       Impact factor: 3.169

2.  ConceptMetab: exploring relationships among metabolite sets to identify links among biomedical concepts.

Authors:  Raymond G Cavalcante; Snehal Patil; Terry E Weymouth; Kestutis G Bendinskas; Alla Karnovsky; Maureen A Sartor
Journal:  Bioinformatics       Date:  2016-01-21       Impact factor: 6.937

3.  Rethinking Mass Spectrometry-Based Small Molecule Identification Strategies in Metabolomics.

Authors:  Fumio Matsuda
Journal:  Mass Spectrom (Tokyo)       Date:  2014-08-16

4.  Mass Spectrometry Fingerprints of Small-Molecule Metabolites in Biofluids: Building a Spectral Library of Recurrent Spectra for Urine Analysis.

Authors:  Yamil Simón-Manso; Ramesh Marupaka; Xinjian Yan; Yuxue Liang; Kelly H Telu; Yuri Mirokhin; Stephen E Stein
Journal:  Anal Chem       Date:  2019-08-30       Impact factor: 6.986

Review 5.  Predicting drug metabolism: experiment and/or computation?

Authors:  Johannes Kirchmair; Andreas H Göller; Dieter Lang; Jens Kunze; Bernard Testa; Ian D Wilson; Robert C Glen; Gisbert Schneider
Journal:  Nat Rev Drug Discov       Date:  2015-04-24       Impact factor: 84.694

6.  Many InChIs and quite some feat.

Authors:  Wendy A Warr
Journal:  J Comput Aided Mol Des       Date:  2015-06-17       Impact factor: 3.686

7.  Proposed Confidence Scale and ID Score in the Identification of Known-Unknown Compounds Using High Resolution MS Data.

Authors:  Bertrand Rochat
Journal:  J Am Soc Mass Spectrom       Date:  2017-01-23       Impact factor: 3.109

8.  Technical Challenges in Mass Spectrometry-Based Metabolomics.

Authors:  Fumio Matsuda
Journal:  Mass Spectrom (Tokyo)       Date:  2016-11-25

Review 9.  Challenges in Identifying the Dark Molecules of Life.

Authors:  María Eugenia Monge; James N Dodds; Erin S Baker; Arthur S Edison; Facundo M Fernández
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2019-03-18       Impact factor: 10.745

10.  MolFind: a software package enabling HPLC/MS-based identification of unknown chemical structures.

Authors:  Lochana C Menikarachchi; Shannon Cawley; Dennis W Hill; L Mark Hall; Lowell Hall; Steven Lai; Janine Wilder; David F Grant
Journal:  Anal Chem       Date:  2012-10-23       Impact factor: 6.986

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