Literature DB >> 21823754

Validation and invalidation of systems biology models using robustness analysis.

D G Bates1, C Cosentino.   

Abstract

Robustness, the ability of a system to function correctly in the presence of both internal and external uncertainty, has emerged as a key organising principle in many biological systems. Biological robustness has thus become a major focus of research in Systems Biology, particularly on the engineering-biology interface, since the concept of robustness was first rigorously defined in the context of engineering control systems. This review focuses on one particularly important aspect of robustness in Systems Biology, that is, the use of robustness analysis methods for the validation or invalidation of models of biological systems. With the explosive growth in quantitative modelling brought about by Systems Biology, the problem of validating, invalidating and discriminating between competing models of a biological system has become an increasingly important one. In this review, the authors provide a comprehensive overview of the tools and methods that are available for this task, and illustrate the wide range of biological systems to which this approach has been successfully applied.

Mesh:

Year:  2011        PMID: 21823754     DOI: 10.1049/iet-syb.2010.0072

Source DB:  PubMed          Journal:  IET Syst Biol        ISSN: 1751-8849            Impact factor:   1.615


  13 in total

1.  A group theoretic approach to model comparison with simplicial representations.

Authors:  Sean T Vittadello; Michael P H Stumpf
Journal:  J Math Biol       Date:  2022-10-09       Impact factor: 2.164

2.  Data-driven quantification of the robustness and sensitivity of cell signaling networks.

Authors:  Sayak Mukherjee; Sang-Cheol Seok; Veronica J Vieland; Jayajit Das
Journal:  Phys Biol       Date:  2013-10-29       Impact factor: 2.583

Review 3.  Synthetic biology and regulatory networks: where metabolic systems biology meets control engineering.

Authors:  Fei He; Ettore Murabito; Hans V Westerhoff
Journal:  J R Soc Interface       Date:  2016-04-13       Impact factor: 4.118

4.  Computational Modeling of a Transcriptional Switch Underlying B-Lymphocyte Lineage Commitment of Hematopoietic Multipotent Cells.

Authors:  Luca Salerno; Carlo Cosentino; Giovanni Morrone; Francesco Amato
Journal:  PLoS One       Date:  2015-07-13       Impact factor: 3.240

5.  Systems approaches in osteoarthritis: Identifying routes to novel diagnostic and therapeutic strategies.

Authors:  Alan J Mueller; Mandy J Peffers; Carole J Proctor; Peter D Clegg
Journal:  J Orthop Res       Date:  2017-04-24       Impact factor: 3.494

Review 6.  Understanding the mTOR signaling pathway via mathematical modeling.

Authors:  Nurgazy Sulaimanov; Martin Klose; Hauke Busch; Melanie Boerries
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2017-02-10

7.  Mathematical modelling of the MAP kinase pathway using proteomic datasets.

Authors:  Tianhai Tian; Jiangning Song
Journal:  PLoS One       Date:  2012-08-08       Impact factor: 3.240

8.  Validation of a model of the GAL regulatory system via robustness analysis of its bistability characteristics.

Authors:  Luca Salerno; Carlo Cosentino; Alessio Merola; Declan G Bates; Francesco Amato
Journal:  BMC Syst Biol       Date:  2013-05-17

9.  How informative is your kinetic model?: using resampling methods for model invalidation.

Authors:  Dicle Hasdemir; Huub C J Hoefsloot; Johan A Westerhuis; Age K Smilde
Journal:  BMC Syst Biol       Date:  2014-05-22

10.  A continuous optimization approach for inferring parameters in mathematical models of regulatory networks.

Authors:  Zhimin Deng; Tianhai Tian
Journal:  BMC Bioinformatics       Date:  2014-07-29       Impact factor: 3.169

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.