Literature DB >> 21823622

Discovery of a cytokinin deaminase.

Alissa M Goble, Hao Fan, Andrej Sali, Frank M Raushel.   

Abstract

An enzyme of unknown function within the amidohydrolase superfamily was discovered to catalyze the hydrolysis of N-6-substituted adenine derivatives, several of which are cytokinins. Cytokinins are a common type of plant hormone and N-6-substituted adenines are also found as modifications to tRNA. Patl2390, from Pseudoalteromonas atlantica T6c, was shown to hydrolytically deaminate N-6-isopentenyladenine to hypoxanthine and isopentenylamine with a k(cat)/K(m) of 1.2 × 10(7) M(-1) s(-1). Additional substrates include N-6-benzyl adenine, cis- and trans-zeatin, kinetin, O-6-methylguanine, N-6-butyladenine, N-6-methyladenine, N,N-dimethyladenine, 6-methoxypurine, 6-chloropurine, and 6-thiomethylpurine. This enzyme does not catalyze the deamination of adenine or adenosine. A comparative model of Patl2390 was computed using the three-dimensional crystal structure of Pa0148 (PDB code 3PAO ) as a structural template, and docking was used to refine the model to accommodate experimentally identified substrates. This is the first identification of an enzyme that will hydrolyze an N-6-substituted side chain larger than methylamine from adenine.

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Year:  2011        PMID: 21823622      PMCID: PMC3199332          DOI: 10.1021/cb200198c

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  28 in total

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5.  Pa0148 from Pseudomonas aeruginosa catalyzes the deamination of adenine.

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Authors:  Julie L Tubbs; Vitaly Latypov; Sreenivas Kanugula; Amna Butt; Manana Melikishvili; Rolf Kraehenbuehl; Oliver Fleck; Andrew Marriott; Amanda J Watson; Barbara Verbeek; Gail McGown; Mary Thorncroft; Mauro F Santibanez-Koref; Christopher Millington; Andrew S Arvai; Matthew D Kroeger; Lisa A Peterson; David M Williams; Michael G Fried; Geoffrey P Margison; Anthony E Pegg; John A Tainer
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2.  Manipulation of cytokinin level in the ergot fungus Claviceps purpurea emphasizes its contribution to virulence.

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Review 4.  Enzyme Function Initiative-Enzyme Similarity Tool (EFI-EST): A web tool for generating protein sequence similarity networks.

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6.  Structure-guided discovery of new deaminase enzymes.

Authors:  Daniel S Hitchcock; Hao Fan; Jungwook Kim; Matthew Vetting; Brandan Hillerich; Ronald D Seidel; Steven C Almo; Brian K Shoichet; Andrej Sali; Frank M Raushel
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7.  Deamination of 6-aminodeoxyfutalosine in menaquinone biosynthesis by distantly related enzymes.

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8.  Biochemical Characterization of Putative Adenylate Dimethylallyltransferase and Cytokinin Dehydrogenase from Nostoc sp. PCC 7120.

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9.  Prediction of substrates for glutathione transferases by covalent docking.

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10.  Isolation and characterization marine bacteria capable of degrading lignin-derived compounds.

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  10 in total

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