Literature DB >> 21823089

Heterologous amplification and characterization of microsatellite markers in the Neotropical fish Leporinus friderici.

A M Olivatti1, T A Boni, N J Silva-Júnior, L V Resende, F O Gouveia, M P C Telles.   

Abstract

Leporinus friderici, native to the Amazon Basin and popularly known as "piau-três-pintas", has great ecological and economic importance; it is widely fished and consumed throughout much of tropical South America. Knowledge of the genetic diversity of this native species is important to support management and conservation programs. We evaluated microsatellite loci amplification, using heterologous primers, in 31 individuals of L. friderici. These samples were collected from natural populations of the Araguaia River basin, in central Brazil, and the DNA was extracted from samples of muscle tissue. Eight loci were successfully analyzed. Six of them were polymorphic, and the number of alleles ranged from three to 10. Values of expected heterozygosities for these polymorphic loci ranged from 0.488 to 0.795. Exclusion probability (0.983), the identity probability (0.000073), and the mean genetic diversity values were high, showing that these microsatellite markers are suitable for assessing the genetic variability of L. friderici populations. There is a growing interest in studies that evaluate the genetic variability of natural populations for various purposes, such as conservation. Here, we showed that a viable alternative to the costly development of specific primers for fish populations is simply testing for heterologous amplification of microsatellite markers available from research on other species.

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Year:  2011        PMID: 21823089     DOI: 10.4238/vol10-3gmr1020

Source DB:  PubMed          Journal:  Genet Mol Res        ISSN: 1676-5680


  4 in total

1.  Isolation and characterization of polymorphic microsatellite markers in Tetranychus urticae and cross amplification in other Tetranychidae and Phytoseiidae species of economic importance.

Authors:  B Sabater-Muñoz; S Pascual-Ruiz; M A Gómez-Martínez; J A Jacas; M A Hurtado
Journal:  Exp Appl Acarol       Date:  2012-02-16       Impact factor: 2.132

2.  Development of microsatellite markers for the predatory mite Phytoseiulus macropilis and cross-amplification in three other species of phytoseiid mites.

Authors:  Maria Cristina Vitelli Queiroz; Fernanda Ancelmo de Oliveira; Anete Pereira de Souza; Mario Eidi Sato
Journal:  Exp Appl Acarol       Date:  2020-11-16       Impact factor: 2.132

3.  De novo assembly of genome and development of polymorphic microsatellite loci in the blue swimming crab (Portunus pelagicus) using RAD approach.

Authors:  Qingyang Wu; Guidong Miao; Xincang Li; Wenhua Liu; Mhd Ikhwanuddin; Hongyu Ma
Journal:  Mol Biol Rep       Date:  2018-09-10       Impact factor: 2.316

4.  Rapid development of microsatellite markers with 454 pyrosequencing in a vulnerable fish, the mottled skate, Raja pulchra.

Authors:  Jung-Ha Kang; Jung-Youn Park; Hyun-Su Jo
Journal:  Int J Mol Sci       Date:  2012-06-12       Impact factor: 6.208

  4 in total

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