Literature DB >> 21822341

Modelling the distribution of domestic ducks in Monsoon Asia.

Thomas P Van Boeckel1, Diann Prosser, Gianluca Franceschini, Chandra Biradar, William Wint, Tim Robinson, Marius Gilbert.   

Abstract

Domestic ducks are considered to be an important reservoir of highly pathogenic avian influenza (HPAI), as shown by a number of geospatial studies in which they have been identified as a significant risk factor associated with disease presence. Despite their importance in HPAI epidemiology, their large-scale distribution in monsoon Asia is poorly understood. In this study, we created a spatial database of domestic duck census data in Asia and used it to train statistical distribution models for domestic duck distributions at a spatial resolution of 1 km. The method was based on a modelling framework used by the Food and Agriculture Organisation to produce the Gridded Livestock of the World (GLW) database, and relies on stratified regression models between domestic duck densities and a set of agro-ecological explanatory variables. We evaluated different ways of stratifying the analysis and of combining the prediction to optimize the goodness of fit of the predictions. We found that domestic duck density could be predicted with reasonable accuracy (mean RMSE and correlation coefficient between log-transformed observed and predicted densities being 0.58 and 0.80, respectively), using a stratification based on livestock production systems. We tested the use of artificially degraded data on duck distributions in Thailand and Vietnam as training data, and compared the modelled outputs with the original high-resolution data. This showed, for these two countries at least, that these approaches could be used to accurately disaggregate provincial level (administrative level 1) statistical data to provide high resolution model distributions.

Entities:  

Year:  2011        PMID: 21822341      PMCID: PMC3148691          DOI: 10.1016/j.agee.2011.04.013

Source DB:  PubMed          Journal:  Agric Ecosyst Environ        ISSN: 0167-8809            Impact factor:   5.567


  15 in total

1.  Geographical determinants and environmental implications of livestock production intensification in Asia.

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Journal:  Bioresour Technol       Date:  2005-01       Impact factor: 9.642

2.  Summary of avian influenza activity in Europe, Asia, and Africa, 2006-2009.

Authors:  Ian H Brown
Journal:  Avian Dis       Date:  2010-03       Impact factor: 1.577

Review 3.  Why do we still use stepwise modelling in ecology and behaviour?

Authors:  Mark J Whittingham; Philip A Stephens; Richard B Bradbury; Robert P Freckleton
Journal:  J Anim Ecol       Date:  2006-09       Impact factor: 5.091

Review 4.  Determining global population distribution: methods, applications and data.

Authors:  D L Balk; U Deichmann; G Yetman; F Pozzi; S I Hay; A Nelson
Journal:  Adv Parasitol       Date:  2006       Impact factor: 3.870

Review 5.  Global environmental data for mapping infectious disease distribution.

Authors:  S I Hay; A J Tatem; A J Graham; S J Goetz; D J Rogers
Journal:  Adv Parasitol       Date:  2006       Impact factor: 3.870

6.  Role of domestic ducks in the propagation and biological evolution of highly pathogenic H5N1 influenza viruses in Asia.

Authors:  D J Hulse-Post; K M Sturm-Ramirez; J Humberd; P Seiler; E A Govorkova; S Krauss; C Scholtissek; P Puthavathana; C Buranathai; T D Nguyen; H T Long; T S P Naipospos; H Chen; T M Ellis; Y Guan; J S M Peiris; R G Webster
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-19       Impact factor: 11.205

7.  Genesis of a highly pathogenic and potentially pandemic H5N1 influenza virus in eastern Asia.

Authors:  K S Li; Y Guan; J Wang; G J D Smith; K M Xu; L Duan; A P Rahardjo; P Puthavathana; C Buranathai; T D Nguyen; A T S Estoepangestie; A Chaisingh; P Auewarakul; H T Long; N T H Hanh; R J Webby; L L M Poon; H Chen; K F Shortridge; K Y Yuen; R G Webster; J S M Peiris
Journal:  Nature       Date:  2004-07-08       Impact factor: 49.962

8.  Persistence of highly pathogenic avian influenza H5N1 virus defined by agro-ecological niche.

Authors:  Lenny Hogerwerf; Rob G Wallace; Daniela Ottaviani; Jan Slingenbergh; Diann Prosser; Luc Bergmann; Marius Gilbert
Journal:  Ecohealth       Date:  2010-06-29       Impact factor: 3.184

Review 9.  Ducks: the "Trojan horses" of H5N1 influenza.

Authors:  Jeong-Ki Kim; Nicholas J Negovetich; Heather L Forrest; Robert G Webster
Journal:  Influenza Other Respir Viruses       Date:  2009-07       Impact factor: 4.380

10.  Global data for ecology and epidemiology: a novel algorithm for temporal Fourier processing MODIS data.

Authors:  Jörn P W Scharlemann; David Benz; Simon I Hay; Bethan V Purse; Andrew J Tatem; G R William Wint; David J Rogers
Journal:  PLoS One       Date:  2008-01-09       Impact factor: 3.240

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  19 in total

1.  Complex reassortment of multiple subtypes of avian influenza viruses in domestic ducks at the Dongting Lake Region of China.

Authors:  Guohua Deng; Dan Tan; Jianzhong Shi; Pengfei Cui; Yongping Jiang; Liling Liu; Guobin Tian; Yoshihiro Kawaoka; Chengjun Li; Hualan Chen
Journal:  J Virol       Date:  2013-06-26       Impact factor: 5.103

2.  Establishment and lineage replacement of H6 influenza viruses in domestic ducks in southern China.

Authors:  Kai Huang; Huachen Zhu; Xiaohui Fan; Jia Wang; Chung-Lam Cheung; Lian Duan; Wenshan Hong; Yongmei Liu; Lifeng Li; David K Smith; Honglin Chen; Robert G Webster; Richard J Webby; Malik Peiris; Yi Guan
Journal:  J Virol       Date:  2012-03-21       Impact factor: 5.103

3.  Modelling the distribution of chickens, ducks, and geese in China.

Authors:  Diann J Prosser; Junxi Wu; Erle C Ellis; Fred Gale; Thomas P Van Boeckel; William Wint; Tim Robinson; Xiangming Xiao; Marius Gilbert
Journal:  Agric Ecosyst Environ       Date:  2011-05-01       Impact factor: 5.567

4.  Predicting the distribution of intensive poultry farming in Thailand.

Authors:  Thomas P Van Boeckel; Weerapong Thanapongtharm; Timothy Robinson; Laura D'Aietti; Marius Gilbert
Journal:  Agric Ecosyst Environ       Date:  2012-03-01       Impact factor: 5.567

5.  The Genomic Evolution and the Transmission Dynamics of H6N2 Avian Influenza A Viruses in Southern China.

Authors:  Zhaoxia Yuan; Taifang Zhou; Jiahao Zhang; Qingxin Zeng; Danli Jiang; Meifang Wei; Xudong Li
Journal:  Viruses       Date:  2022-05-26       Impact factor: 5.818

Review 6.  Risk factor modelling of the spatio-temporal patterns of highly pathogenic avian influenza (HPAIV) H5N1: a review.

Authors:  Marius Gilbert; Dirk U Pfeiffer
Journal:  Spat Spatiotemporal Epidemiol       Date:  2012-02-07

7.  Predicting hotspots for influenza virus reassortment.

Authors:  Trevon L Fuller; Marius Gilbert; Vincent Martin; Julien Cappelle; Parviez Hosseini; Kevin Y Njabo; Soad Abdel Aziz; Xiangming Xiao; Peter Daszak; Thomas B Smith
Journal:  Emerg Infect Dis       Date:  2013-04       Impact factor: 6.883

8.  Genomic evolution, transmission dynamics, and pathogenicity of avian influenza A (H5N8) viruses emerging in China, 2020.

Authors:  Jiahao Zhang; Xudong Li; Xiaomin Wang; Hejia Ye; Bo Li; Yiqun Chen; Junhong Chen; Tao Zhang; Ziwen Qiu; Huanan Li; Weixin Jia; Ming Liao; Wenbao Qi
Journal:  Virus Evol       Date:  2021-05-06

9.  Income Disparities and the Global Distribution of Intensively Farmed Chicken and Pigs.

Authors:  Marius Gilbert; Giulia Conchedda; Thomas P Van Boeckel; Giuseppina Cinardi; Catherine Linard; Gaëlle Nicolas; Weerapong Thanapongtharm; Laura D'Aietti; William Wint; Scott H Newman; Timothy P Robinson
Journal:  PLoS One       Date:  2015-07-31       Impact factor: 3.240

10.  Mapping the global distribution of livestock.

Authors:  Timothy P Robinson; G R William Wint; Giulia Conchedda; Thomas P Van Boeckel; Valentina Ercoli; Elisa Palamara; Giuseppina Cinardi; Laura D'Aietti; Simon I Hay; Marius Gilbert
Journal:  PLoS One       Date:  2014-05-29       Impact factor: 3.240

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