Literature DB >> 21814633

A threaded Java concurrent implementation of the Monte-Carlo Metropolis Ising model.

Carlos Castañeda-Marroquín, Alfonso Ortega de la Puente, Manuel Alfonseca, James A Glazier, Maciej Swat.   

Abstract

This paper describes a concurrent Java implementation of the Metropolis Monte-Carlo algorithm that is used in 2D Ising model simulations. The presented method uses threads, monitors, shared variables and high level concurrent constructs that hide the low level details. In our algorithm we assign one thread to handle one spin flip attempt at a time. We use special lattice site selection algorithm to avoid two or more threads working concurently in the region of the lattice that "belongs" to two or more different spins undergoing spin-flip transformation. Our approach does not depend on the current platform and maximizes concurrent use of the available resources.

Entities:  

Year:  2009        PMID: 21814633      PMCID: PMC3148013     

Source DB:  PubMed          Journal:  Int Work Conf Interp Nat Artif Comput


  4 in total

1.  CompuCell, a multi-model framework for simulation of morphogenesis.

Authors:  J A Izaguirre; R Chaturvedi; C Huang; T Cickovski; J Coffland; G Thomas; G Forgacs; M Alber; G Hentschel; S A Newman; J A Glazier
Journal:  Bioinformatics       Date:  2004-02-05       Impact factor: 6.937

2.  Simulation of biological cell sorting using a two-dimensional extended Potts model.

Authors: 
Journal:  Phys Rev Lett       Date:  1992-09-28       Impact factor: 9.161

3.  A framework for three-dimensional simulation of morphogenesis.

Authors:  Trevor M Cickovski; Chenbang Huang; Rajiv Chaturvedi; Tilmann Glimm; H George E Hentschel; Mark S Alber; James A Glazier; Stuart A Newman; Jesús A Izaguirre
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2005 Oct-Dec       Impact factor: 3.710

4.  Parallel simulation of the Ising model.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1994-08
  4 in total

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