Literature DB >> 21814288

Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume.

Zhenmei Lu1, Ye Deng, Joy D Van Nostrand, Zhili He, James Voordeckers, Aifen Zhou, Yong-Jin Lee, Olivia U Mason, Eric A Dubinsky, Krystle L Chavarria, Lauren M Tom, Julian L Fortney, Regina Lamendella, Janet K Jansson, Patrik D'haeseleer, Terry C Hazen, Jizhong Zhou.   

Abstract

The Deepwater Horizon oil spill in the Gulf of Mexico is the deepest and largest offshore spill in the United State history and its impacts on marine ecosystems are largely unknown. Here, we showed that the microbial community functional composition and structure were dramatically altered in a deep-sea oil plume resulting from the spill. A variety of metabolic genes involved in both aerobic and anaerobic hydrocarbon degradation were highly enriched in the plume compared with outside the plume, indicating a great potential for intrinsic bioremediation or natural attenuation in the deep sea. Various other microbial functional genes that are relevant to carbon, nitrogen, phosphorus, sulfur and iron cycling, metal resistance and bacteriophage replication were also enriched in the plume. Together, these results suggest that the indigenous marine microbial communities could have a significant role in biodegradation of oil spills in deep-sea environments.

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Year:  2011        PMID: 21814288      PMCID: PMC3260509          DOI: 10.1038/ismej.2011.91

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  29 in total

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Authors:  Yiqi Luo; Dafeng Hui; Deqiang Zhang
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Review 2.  Microbial communities in oil-contaminated seawater.

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Journal:  Curr Opin Biotechnol       Date:  2004-06       Impact factor: 9.740

Review 3.  Biocatalytic degradation of pollutants.

Authors:  Rebecca E Parales; John D Haddock
Journal:  Curr Opin Biotechnol       Date:  2004-08       Impact factor: 9.740

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Authors:  M J L de Hoon; S Imoto; J Nolan; S Miyano
Journal:  Bioinformatics       Date:  2004-02-10       Impact factor: 6.937

5.  Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification.

Authors:  Liyou Wu; Xueduan Liu; Christopher W Schadt; Jizhong Zhou
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

Review 6.  Marine microorganisms make a meal of oil.

Authors:  Ian M Head; D Martin Jones; Wilfred F M Röling
Journal:  Nat Rev Microbiol       Date:  2006-03       Impact factor: 60.633

7.  Characterization of marine temperate phage-host systems isolated from Mamala Bay, Oahu, Hawaii.

Authors:  S C Jiang; C A Kellogg; J H Paul
Journal:  Appl Environ Microbiol       Date:  1998-02       Impact factor: 4.792

8.  Petrobactin, a photoreactive siderophore produced by the oil-degrading marine bacterium Marinobacter hydrocarbonoclasticus.

Authors:  Katherine Barbeau; Guangping Zhang; David H Live; Alison Butler
Journal:  J Am Chem Soc       Date:  2002-01-23       Impact factor: 15.419

9.  Anaerobic transformation of alkanes to fatty acids by a sulfate-reducing bacterium, strain Hxd3.

Authors:  Chi Ming So; Craig D Phelps; L Y Young
Journal:  Appl Environ Microbiol       Date:  2003-07       Impact factor: 4.792

10.  Anaerobic hydrocarbon biodegradation in deep subsurface oil reservoirs.

Authors:  Carolyn M Aitken; D M Jones; S R Larter
Journal:  Nature       Date:  2004-09-16       Impact factor: 49.962

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  80 in total

1.  Chemical dispersants can suppress the activity of natural oil-degrading microorganisms.

Authors:  Sara Kleindienst; Michael Seidel; Kai Ziervogel; Sharon Grim; Kathy Loftis; Sarah Harrison; Sairah Y Malkin; Matthew J Perkins; Jennifer Field; Mitchell L Sogin; Thorsten Dittmar; Uta Passow; Patricia M Medeiros; Samantha B Joye
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-09       Impact factor: 11.205

2.  An assessment of the microbial community in an urban fringing tidal marsh with an emphasis on petroleum hydrocarbon degradative genes.

Authors:  Sinéad M Ní Chadhain; Jarett L Miller; John P Dustin; Jeff P Trethewey; Stephen H Jones; Loren A Launen
Journal:  Mar Pollut Bull       Date:  2018-09-22       Impact factor: 5.553

3.  The PathoChip, a functional gene array for assessing pathogenic properties of diverse microbial communities.

Authors:  Yong-Jin Lee; Joy D van Nostrand; Qichao Tu; Zhenmei Lu; Lei Cheng; Tong Yuan; Ye Deng; Michelle Q Carter; Zhili He; Liyou Wu; Fang Yang; Jian Xu; Jizhong Zhou
Journal:  ISME J       Date:  2013-06-13       Impact factor: 10.302

4.  Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill.

Authors:  Adam R Rivers; Shalabh Sharma; Susannah G Tringe; Jeffrey Martin; Samantha B Joye; Mary Ann Moran
Journal:  ISME J       Date:  2013-08-01       Impact factor: 10.302

5.  The microbial gene diversity along an elevation gradient of the Tibetan grassland.

Authors:  Yunfeng Yang; Ying Gao; Shiping Wang; Depeng Xu; Hao Yu; Linwei Wu; Qiaoyan Lin; Yigang Hu; Xiangzhen Li; Zhili He; Ye Deng; Jizhong Zhou
Journal:  ISME J       Date:  2013-08-29       Impact factor: 10.302

6.  Hydrocarbon degradation and response of seafloor sediment bacterial community in the northern Gulf of Mexico to light Louisiana sweet crude oil.

Authors:  Hernando P Bacosa; Deana L Erdner; Brad E Rosenheim; Prateek Shetty; Kiley W Seitz; Brett J Baker; Zhanfei Liu
Journal:  ISME J       Date:  2018-06-27       Impact factor: 10.302

7.  Microbial Community Composition, Functions, and Activities in the Gulf of Mexico 1 Year after the Deepwater Horizon Accident.

Authors:  Etienne Yergeau; Christine Maynard; Sylvie Sanschagrin; Julie Champagne; David Juck; Kenneth Lee; Charles W Greer
Journal:  Appl Environ Microbiol       Date:  2015-06-19       Impact factor: 4.792

8.  Salt Marsh Bacterial Communities before and after the Deepwater Horizon Oil Spill.

Authors:  Annette Summers Engel; Chang Liu; Audrey T Paterson; Laurie C Anderson; R Eugene Turner; Edward B Overton
Journal:  Appl Environ Microbiol       Date:  2017-09-29       Impact factor: 4.792

9.  Stochasticity, succession, and environmental perturbations in a fluidic ecosystem.

Authors:  Jizhong Zhou; Ye Deng; Ping Zhang; Kai Xue; Yuting Liang; Joy D Van Nostrand; Yunfeng Yang; Zhili He; Liyou Wu; David A Stahl; Terry C Hazen; James M Tiedje; Adam P Arkin
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-18       Impact factor: 11.205

10.  Microbial mechanisms mediating increased soil C storage under elevated atmospheric N deposition.

Authors:  Sarah D Eisenlord; Zachary Freedman; Donald R Zak; Kai Xue; Zhili He; Jizhong Zhou
Journal:  Appl Environ Microbiol       Date:  2012-12-07       Impact factor: 4.792

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