| Literature DB >> 21801621 |
Louise A Ouattara1, Francis Barin, Marie Anne Barthez, Bertrand Bonnaud, Philippe Roingeard, Alain Goudeau, Pierre Castelnau, Guy Vernet, Gláucia Paranhos-Baccalà, Florence Komurian-Pradel.
Abstract
For many encephalitis cases, the cause remains unidentified. After 2 children (from the same family) received a diagnosis of acute necrotizing encephalopathy at Centre Hospitalier Universitaire (Tours, France), we attempted to identify the etiologic agent. Because clinical samples from the 2 patients were negative for all pathogens tested, urine and throat swab specimens were added to epithelial cells, and virus isolates detected were characterized by molecular analysis and electron microscopy. We identified a novel reovirus strain (serotype 2), MRV2Tou05, which seems to be closely related to porcine and human strains. A specific antibody response directed against this new reovirus strain was observed in convalescent-phase serum specimens from the patients, whereas no response was observed in 38 serum specimens from 38 healthy adults. This novel reovirus is a new etiologic agent of encephalitis.Entities:
Mesh:
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Year: 2011 PMID: 21801621 PMCID: PMC3381585 DOI: 10.3201/eid1708.101528
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
Primers used for amplification of MRV2TOU05, a novel human type 2 reovirus, and complete sequencing and reovirus detection*
| Primer | Sequence, 5′ → 3′ | Position (strain) | RT-PCR product size, bp | GenBank accession no. |
|---|---|---|---|---|
| For genome amplification of MRV2Tou05 | ||||
| L1 forward | GCTACACGTTCCACGACAAT | 1–20 (SC-A) | 3,852 | GU196306 |
| L1 reverse | TGAGTTGACGCACCACGACCCA | 3852–3831 (SC-A) | ||
| L2 forward | ATGGCGAACGTTTGGGGAGT | 13–32 (SC-A) | 3,903 | GU196307 |
| L2 reverse | GATGAATTAGGCACGCTCACG | 3915–3895 (SC-A) | ||
| L3 forward | TAATCGTCAGGATGAAGCGGA | 3–23 (SC-A) | 3,897 | GU196308 |
| L3 reverse | TGAATCGGCCCAACTAGCAT | 3899–3880 (SC-A) | ||
| M1 forward | ATGGCTTACATCGCAGTTCCT | 14–34 (SC-A) | 2,278 | GU196309 |
| M1 reverse | CGTAGTCTTAGCCCGCCCC | 2291–2273 (SC-A) | ||
| M2 forward | TAATCTGCTGACCGTCACTC | 3–22 (SC-A) | 2,195 | GU196310 |
| M2 reverse | GTGCCTGCATCCCTTAACC | 2197–2179 (SC-A) | ||
| M3 forward | CGTGGTCATGGCTTCATTC | 12–30 (SC-A) | 2,230 | GU196311 |
| M3 reverse | GATGAATAGGGGTCGGGAA | 2241–2223 (SC-A) | ||
| S2 forward | CTATTCGCTGGTCAGTTATG | 2–21 (SC-A) | 1,330 | GU196312 |
| S2 reverse | GATGAATGTGTGGTCAGTCG | 1331–1312 (SC-A) | ||
| S3 forward | TAAAGTCACGCCTGTTGTCG | 3–22 (SC-A) | 1,178 | GU196313 |
| S3 reverse | ACCACCAAGACATCGGCAC | 1180–1162 (SC-A) | ||
| S4 forward | GTTGTCGCAATGGAGGTGTG | 24–43 (SC-A) | 1,158 | GU196314 |
| S4 reverse | TCCCACGTCACACCAGGTT | 1181–1163 (SC-A) | ||
| S1 forward | CCGATGTCCGAACTTCAACA | 1–17 (MRV2Tou05) | 1,423 | GU196315 |
| S1 reverse | ATGAATTGCCGTCGTGCCG | 1423–1405 (MRV2Tou05) | ||
| For reovirus detection test | ||||
| L3-2 reverse | GGATGATTCTGCCATGAGCT | 705–686 (BYD1) | 696 | ND |
| L3-1 forward | CAGGATGAAGCGGATTCCAA | 10–29 (T3D, T1L, T2J, SC-A, BYD1) | ND | |
| L3-5 reverse | CCAACACGCGCAGGATGTTT | 522–503 (T3D, BYD1, T1L) | 512 | ND |
| L3-1 forward | CAGGATGAAGCGGATTCCAA | 10–29 (T3D, T1L, T2J, SC-A, BYD1) | ND | |
*RT-PCR, reverse transcription PCR; L, large segment; M, medium segment; S, small segment; ND, not determined.
Figure 1A) Magnetic resonance image of brain corona of patient 1, a 6-year-old boy with acute necrotizing encephalopathy (ANE). B). Axial-weighted images of brain thalami of patient 2, a 22-month-old girl with ANE, the cousin of patient 1.
Figure 2Electron microscopic images of the cytopathic effect induced in MRC5 cells by a reovirus isolate from throat specimens of patient 2, a 22-month-old girl with acute necrotizing ancephalopathy. N, nucleus; arrows indicate viral intracytoplasmic inclusions. Scale bars indicate 2 µm (A) or 0.2 µm (B).
Nucleotide and amino acid identities for segments of MRV2Tou05, a novel human type 2 reovirus, isolated from patient 2, with reovirus prototypes and SC-A strain*
| MRV2Tou05 RNA segment | Reovirus prototype strain, % | Swine reovirus strain,
SC-A, % | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| T1L |
| T2J |
| T3D | ||||||
| Nucleotide | Protein | Nucleotide | Protein | Nucleotide | Protein | Nucleotide | Protein | |||
| L1 | 90 | 98 | 75 | 92 | 90 | 98 | 97 | 99 | ||
| L2 | 86 | 97 | 73 | 87 | 77 | 93 | 97 | 98 | ||
| L3 | 84 | 98 | 77 | 95 | 84 | 98 | 97 | 99 | ||
| M1 | 92 | 97 | 70 | 80 | 92 | 96 | 90 | 95 | ||
| M2 | 85 | 98 | 76 | 97 | 90 | 98 | 97 | 99 | ||
| M3 | 85 | 95 | 71 | 82 | 85 | 95 | 97 | 98 | ||
| S1 | 58 | 46 | 62 | 62 | 42 | 26 | 42 | 25 | ||
| S2 | 85 | 98 | 76 | 94 | 85 | 98 | 88 | 98 | ||
| S3 | 91 | 97 | 74 | 86 | 85 | 97 | 91 | 99 | ||
| S4 | 87 | 97 | 79 | 91 | 87 | 96 | 95 | 99 | ||
*T1L, type 1 Lang; TJ2, type 2 Jones ; T3D, type 3 Dearing; L, large segment; M, medium segment; S, small segment.
Comparison of S1 and S3 genes of MRV2Tou05, a novel human type 2 reovirus, with the most representative mammalian reovirus strains*
| Strain | GenBank accession no. |
| % Similarity to MRV2Tou05 S1 |
| % Similarity to MRV2Tou05 S3 | |||
|---|---|---|---|---|---|---|---|---|
| S1 | S3 | Nucleotide | Protein | Nucleotide | Protein | |||
| T1C50 | AY862133 | NA | 57 | 50 | NA | NA | ||
| T1N84 | AY862136 | NA | 58 | 53 | NA | NA | ||
| T1N85 | AY862135 | U35346 | 57 | 51 | 98 | 99 | ||
| T1C11 | NA | U35359 | NA | NA | 91 | 98 | ||
| T1C62 | NA | U35356 | NA | NA | 91 | 99 | ||
| T1C23 | AY862134 | NA | 57 | 50 | NA | NA | ||
| T2N73 | AY862137 | U35350 | 67 | 66 | 99 | 99 | ||
| T2N84 | AY862138 | U35347 | 67 | 66 | 98 | 99 | ||
| T2W | DQ220017 | DQ220018 | 66 | 62 | 75 | 88 | ||
| T2302II | EU049604 | NA | 83 | 89 | NA | NA | ||
| T2302I | EU049603 | NA | 83 | 89 | NA | NA | ||
| BYD1 | DQ312301 | DQ664191 | 66 | 67 | 84 | 95 | ||
| SC-A | DQ911244 | DQ411553 | 42 | 25 | 91 | 97 | ||
| T3Co96 | AY302467 | NA | 43 | 28 | NA | NA | ||
| T3A | L37677 | NA | 48 | 25 | 98 | 97 | ||
| T3C18 | L37684 | NA | 42 | 26 | NA | NA | ||
| T3C8 | L37679 | U35355 | 42 | 24 | 85 | 97 | ||
| T3C31 | L37683 | NA | 41 | 25 | NA | NA | ||
| T3C9 | L37676 | U35352 | 40 | 25 | 82 | 97 | ||
| T3C93 | L37675 | NA | 42 | 25 | NA | NA | ||
| T3C44 | L37681 | NA | 42 | 26 | NA | NA | ||
| T3C45 | L37680 | NA | 42 | 25 | NA | NA | ||
| T3C43 | L37682 | NA | 42 | 25 | NA | NA | ||
| T3C84 | L37678 | U35354 | 42 | 25 | 85 | 97 | ||
| T3N83 | NA | U35349 | NA | NA | 85 | 98 | ||
*S, small segment; NA, not available.
Figure 3Phylogenetic trees of the small segment 1 of reoviruses. A) Nucleotide sequences; B) amino acid sequences. Scale bars indicate nucleotide (A) and amino acid (B) substitutions per site.
Figure 4Results of serologic analysis by Western blot of serum specimens from patient 2, a 22-month-old girl with acute necrotizing ancephalopathy. Three serum specimens from patient 2, harvested at 6 (A), 13 (B), and 19 (C) days after onset of symptoms, and a serum specimen from a healthy donor (D) were incubated with reovirus MRV2Tou05–infected and –noninfected BGM cells. I, infected; C, noninfected; M, molecular weight markers (Precision Plus protein standards).