Literature DB >> 21798194

Metabolic rate and genomic GC: what we can learn from teleost fish.

Erminia Uliano1, Ankita Chaurasia, Luisa Bernà, Claudio Agnisola, Giuseppe D'Onofrio.   

Abstract

Teleosts are a highly diverse group of animals occupying all kind of aquatic environment. Data on routine mass specific metabolic rate were re-examined correcting them for the Boltzmann's factor. Teleostean fish were grouped in five broad groups, corresponding to major environmental classifications: polar, temperate, sub-tropical, tropical and deep-water. The specific routine metabolic rate, temperature-corrected using the Boltzmann's factor (MR), and the average base composition of genomes (GC%) were calculated in each group. Fish of the polar habitat showed the highest MR. Temperate fish displayed a significantly higher MR than tropical fish, which had the lowest average value. These results were apparently in agreement with the cold adaptation hypothesis. In contrast with this hypothesis, however, the MR of fish living in deep-water environment turned out to be not significantly different from that of fish living in tropical habitats. Most probably, the amount of oxygen dissolved in the water directly affects MR adaptation. Regarding the different habitats, the genomic GC levels showed a decreasing trend similar to that of MR. Indeed, both polar and temperate fish showed a GC level significantly higher than that of both sub-tropical and tropical fish. Plotting the genomic GC levels versus the MR a significant positive correlation was found, supporting the hypothesis that metabolic rate can explain not only the compositional transition mode (e.g. amphibian/mammals), but also the compositional shifting mode (e.g. fish/fish) of evolution observed for vertebrate genomes.
Copyright © 2010 Elsevier B.V. All rights reserved.

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Year:  2010        PMID: 21798194     DOI: 10.1016/j.margen.2010.02.001

Source DB:  PubMed          Journal:  Mar Genomics        ISSN: 1874-7787            Impact factor:   1.710


  5 in total

1.  Metabolic cold adaptation in fishes occurs at the level of whole animal, mitochondria and enzyme.

Authors:  Craig R White; Lesley A Alton; Peter B Frappell
Journal:  Proc Biol Sci       Date:  2011-12-07       Impact factor: 5.349

2.  The footprint of metabolism in the organization of mammalian genomes.

Authors:  Luisa Berná; Ankita Chaurasia; Claudia Angelini; Concetta Federico; Salvatore Saccone; Giuseppe D'Onofrio
Journal:  BMC Genomics       Date:  2012-05-08       Impact factor: 3.969

3.  Length and GC content variability of introns among teleostean genomes in the light of the metabolic rate hypothesis.

Authors:  Ankita Chaurasia; Andrea Tarallo; Luisa Bernà; Mitsuharu Yagi; Claudio Agnisola; Giuseppe D'Onofrio
Journal:  PLoS One       Date:  2014-08-05       Impact factor: 3.240

4.  On the genome base composition of teleosts: the effect of environment and lifestyle.

Authors:  Andrea Tarallo; Claudia Angelini; Remo Sanges; Mitsuharu Yagi; Claudio Agnisola; Giuseppe D'Onofrio
Journal:  BMC Genomics       Date:  2016-03-02       Impact factor: 3.969

5.  GC bias lead to increased small amino acids and random coils of proteins in cold-water fishes.

Authors:  Dongsheng Zhang; Peng Hu; Taigang Liu; Jian Wang; Shouwen Jiang; Qianghua Xu; Liangbiao Chen
Journal:  BMC Genomics       Date:  2018-05-02       Impact factor: 3.969

  5 in total

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