Literature DB >> 21797464

Multifractal analysis of nonhyperbolic coupled map lattices: application to genomic sequences.

A Provata1, C Beck.   

Abstract

Symbolic sequences generated by coupled map lattices (CMLs) can be used to model the chaotic-like structure of genomic sequences. In this study it is shown that diffusively coupled Chebyshev maps of order 4 (corresponding to a shift of four symbols) very closely reproduce the multifractal spectrum D(q) of human genomic sequences for coupling constant α = 0.35 ± 0.01 if q > 0. The presence of rare configurations causes deviations for q < 0, which disappear if the rare event statistics of the CML is modified. Such rare configurations are known to play specific functional roles in genomic sequences serving as promoters or regulatory elements.

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Year:  2011        PMID: 21797464     DOI: 10.1103/PhysRevE.83.066210

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  3 in total

1.  Spatial constrains and information content of sub-genomic regions of the human genome.

Authors:  Leonidas P Karakatsanis; Evgenios G Pavlos; George Tsoulouhas; Georgios L Stamokostas; Timothy Mosbruger; Jamie L Duke; George P Pavlos; Dimitri S Monos
Journal:  iScience       Date:  2021-01-10

2.  Vulnerability assessment of freeway network considering the probabilities and consequences from a perspective based on network cascade failure.

Authors:  Jinqiang Xu; Hainan Huang; Yanqiu Cheng; Kuanmin Chen
Journal:  PLoS One       Date:  2022-03-14       Impact factor: 3.240

3.  Exhaled aerosol pattern discloses lung structural abnormality: a sensitivity study using computational modeling and fractal analysis.

Authors:  Jinxiang Xi; Xiuhua A Si; JongWon Kim; Edward Mckee; En-Bing Lin
Journal:  PLoS One       Date:  2014-08-08       Impact factor: 3.240

  3 in total

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