Literature DB >> 21795785

Structure of the Drosophila melanogaster Rab6 GTPase at 1.4 Å resolution.

Miriam Walden1, Huw T Jenkins, Thomas A Edwards.   

Abstract

Rab6 is a small GTPase that belongs to the p21 Ras superfamily. It is involved in vesicle trafficking between the Golgi apparatus and endosomes/ER in eukaryotes. The GDP-bound inactive protein undergoes conformational changes when the nucleotide is exchanged to GTP, allowing Rab6 to interact with a variety of different effector proteins. To further understand how these changes affect downstream protein binding, the crystal structure of Rab6 from Drosophila melanogaster has been solved to 1.4 Å resolution, the highest resolution for a Rab6 structure to date. The crystals belonged to space group C2, with unit-cell parameters a=116.5, b=42.71, c=86.86 Å, α=90, β=133.12, γ=90°. The model was refined to an R factor of 14.5% and an Rfree of 17.3%.

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Year:  2011        PMID: 21795785      PMCID: PMC3144787          DOI: 10.1107/S1744309111017453

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  28 in total

1.  Structural plasticity of an invariant hydrophobic triad in the switch regions of Rab GTPases is a determinant of effector recognition.

Authors:  E Merithew; S Hatherly; J J Dumas; D C Lawe; R Heller-Harrison; D G Lambright
Journal:  J Biol Chem       Date:  2001-01-25       Impact factor: 5.157

Review 2.  Rab proteins as membrane organizers.

Authors:  M Zerial; H McBride
Journal:  Nat Rev Mol Cell Biol       Date:  2001-02       Impact factor: 94.444

Review 3.  Rab proteins.

Authors:  O Martinez; B Goud
Journal:  Biochim Biophys Acta       Date:  1998-08-14

4.  Characterization of GAPCenA, a GTPase activating protein for Rab6, part of which associates with the centrosome.

Authors:  M H Cuif; F Possmayer; H Zander; N Bordes; F Jollivet; A Couedel-Courteille; I Janoueix-Lerosey; G Langsley; M Bornens; B Goud
Journal:  EMBO J       Date:  1999-04-01       Impact factor: 11.598

5.  Rab and Arl GTPase family members cooperate in the localization of the golgin GCC185.

Authors:  Alondra Schweizer Burguete; Timothy D Fenn; Axel T Brunger; Suzanne R Pfeffer
Journal:  Cell       Date:  2008-01-25       Impact factor: 41.582

Review 6.  The integration of macromolecular diffraction data.

Authors:  Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

Review 7.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

8.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

9.  TMF is a golgin that binds Rab6 and influences Golgi morphology.

Authors:  Yael Fridmann-Sirkis; Symeon Siniossoglou; Hugh R B Pelham
Journal:  BMC Cell Biol       Date:  2004-05-05       Impact factor: 4.241

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  3 in total

1.  Comparative modeling of Rab6 proteins: identification of key residues and their interactions with guanine nucleotides.

Authors:  Sandeep Kumar Mulukala Narasimha; Shravan Kumar Gunda; Mahmood Shaik
Journal:  J Mol Model       Date:  2013-01-19       Impact factor: 1.810

2.  Bicaudal-D uses a parallel, homodimeric coiled coil with heterotypic registry to coordinate recruitment of cargos to dynein.

Authors:  Yang Liu; Hannah K Salter; Andrew N Holding; Christopher M Johnson; Elaine Stephens; Peter J Lukavsky; John Walshaw; Simon L Bullock
Journal:  Genes Dev       Date:  2013-05-30       Impact factor: 11.361

3.  Rab6 regulation of the kinesin family KIF1C motor domain contributes to Golgi tethering.

Authors:  Peter L Lee; Maikke B Ohlson; Suzanne R Pfeffer
Journal:  Elife       Date:  2015-03-30       Impact factor: 8.140

  3 in total

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