Literature DB >> 21785867

Polymer phosphorylases: clues to the emergence of non-replicative and replicative polymers.

Miguel Angel Freire1.   

Abstract

Polymer formation is arguably one of the essential factors that allowed the emergence, stabilisation and spread of life on Earth. Consequently, studies concerning biopolymers could shed light on the origins of life itself. Of particular interest are RNA and polysaccharide polymers, the archetypes of the contrasting proposed evolutionary scenarios and their respective polymerases. Nucleic acid polymerases were hypothesised, before their discovery, to have a functional similarity with glycogen phosphorylase. Further identification and characterisation of nucleic acid polymerases; particularly of polynucleotide phosphorylase (PNPase), provided experimental evidence for the initial premise. Once discovered, frequent similarities were found between PNPase and glycogen phosphorylase, in terms of catalytic features and biochemical properties. As a result, PNPase was seen as a model of primitive polymerase and used in laboratory precellular systems. Paradoxically, however, these similarities were not sufficient as an argument in favour of an ancestral common polymerisation mechanism prior to polysaccharides and polyribonucleotides. Here we present an overview of the common features shared by polymer phosphorylases, with new proposals for the emergence of polysaccharide and RNA polymers.

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Year:  2011        PMID: 21785867     DOI: 10.1007/s12064-011-0131-2

Source DB:  PubMed          Journal:  Theory Biosci        ISSN: 1431-7613            Impact factor:   1.919


  53 in total

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Journal:  Science       Date:  1985-05-03       Impact factor: 47.728

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Review 4.  Carbohydrate polymers at the center of life's origins: the importance of molecular processivity.

Authors:  Robert Stern; Mark J Jedrzejas
Journal:  Chem Rev       Date:  2008-12       Impact factor: 60.622

5.  Polyphosphate kinase is a component of the Escherichia coli RNA degradosome.

Authors:  E Blum; B Py; A J Carpousis; C F Higgins
Journal:  Mol Microbiol       Date:  1997-10       Impact factor: 3.501

Review 6.  mRNA degradation in bacteria.

Authors:  R Rauhut; G Klug
Journal:  FEMS Microbiol Rev       Date:  1999-06       Impact factor: 16.408

7.  Characterization of the interaction of yeast enolase with polynucleotides.

Authors:  A G al-Giery; J M Brewer
Journal:  Biochim Biophys Acta       Date:  1992-09-23

8.  Crystal structure of glycogen synthase: homologous enzymes catalyze glycogen synthesis and degradation.

Authors:  Alejandro Buschiazzo; Juan E Ugalde; Marcelo E Guerin; William Shepard; Rodolfo A Ugalde; Pedro M Alzari
Journal:  EMBO J       Date:  2004-07-22       Impact factor: 11.598

9.  De novo synthesis of bacterial glycogen: Agrobacterium tumefaciens glycogen synthase is involved in glucan initiation and elongation.

Authors:  Juan E Ugalde; Armando J Parodi; Rodolfo A Ugalde
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-05       Impact factor: 11.205

Review 10.  Prebiotic chemistry and the origin of the RNA world.

Authors:  Leslie E Orgel
Journal:  Crit Rev Biochem Mol Biol       Date:  2004 Mar-Apr       Impact factor: 8.250

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  2 in total

1.  Origins and emergent evolution of life: the colloid microsphere hypothesis revisited.

Authors:  Richard Egel
Journal:  Orig Life Evol Biosph       Date:  2014-09-11       Impact factor: 1.950

2.  Nontemplate-driven polymers: clues to a minimal form of organization closure at the early stages of living systems.

Authors:  Miguel Ángel Freire
Journal:  Theory Biosci       Date:  2015-04-28       Impact factor: 1.919

  2 in total

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