Literature DB >> 21784906

D1/D2 domain of large-subunit ribosomal DNA for differentiation of Orpinomyces spp.

Sumit S Dagar1, Sanjay Kumar, Priti Mudgil, Rameshwar Singh, Anil K Puniya.   

Abstract

This study presents the suitability of D1/D2 domain of large-subunit (LSU) ribosomal DNA (rDNA) for differentiation of Orpinomyces joyonii and Orpinomyces intercalaris based on PCR-restriction fragment length polymorphism (RFLP). A variation of G/T in O. intercalaris created an additional restriction site for AluI, which was used as an RFLP marker. The results demonstrate adequate heterogeneity in the LSU rDNA for species-level differentiation.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21784906      PMCID: PMC3187145          DOI: 10.1128/AEM.05441-11

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  21 in total

1.  Classical and molecular approaches as a powerful tool for the characterization of rumen polycentric fungi.

Authors:  K Fliegerová; B Hodrová; K Voigt
Journal:  Folia Microbiol (Praha)       Date:  2004       Impact factor: 2.099

2.  Rumen anaerobic fungi of cattle and sheep.

Authors:  T Bauchop
Journal:  Appl Environ Microbiol       Date:  1979-07       Impact factor: 4.792

3.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

4.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

5.  A serum bottle modification of the Hungate technique for cultivating obligate anaerobes.

Authors:  T L Miller; M J Wolin
Journal:  Appl Microbiol       Date:  1974-05

6.  Hydrogenosomes in the rumen fungus Neocallimastix patriciarum.

Authors:  N Yarlett; C G Orpin; E A Munn; N C Yarlett; C A Greenwood
Journal:  Biochem J       Date:  1986-06-15       Impact factor: 3.857

7.  Biohydrogenation of linoleic acid by rumen fungi compared with rumen bacteria.

Authors:  I S Nam; P C Garnsworthy
Journal:  J Appl Microbiol       Date:  2007-09       Impact factor: 3.772

8.  Studies on the capacity of the cellulase of the anaerobic rumen fungus Piromonas communis P to degrade hydrogen bond-ordered cellulose.

Authors:  T M Wood; C A Wilson
Journal:  Appl Microbiol Biotechnol       Date:  1995-07       Impact factor: 4.813

9.  An evaluation of LSU rDNA D1-D2 sequences for their use in species identification.

Authors:  Rainer Sonnenberg; Arne W Nolte; Diethard Tautz
Journal:  Front Zool       Date:  2007-02-16       Impact factor: 3.172

10.  Intraspecific ITS variability in the kingdom fungi as expressed in the international sequence databases and its implications for molecular species identification.

Authors:  R Henrik Nilsson; Erik Kristiansson; Martin Ryberg; Nils Hallenberg; Karl-Henrik Larsson
Journal:  Evol Bioinform Online       Date:  2008-05-26       Impact factor: 1.625

View more
  10 in total

1.  Analysis of the Microbial Diversity in the Fecal Material of Giraffes.

Authors:  Jessica M Schmidt; Susan Henken; Scot E Dowd; Richard William McLaughlin
Journal:  Curr Microbiol       Date:  2017-10-30       Impact factor: 2.188

2.  Phylogeny of anaerobic fungi (phylum Neocallimastigomycota), with contributions from yak in China.

Authors:  Xuewei Wang; Xingzhong Liu; Johannes Z Groenewald
Journal:  Antonie Van Leeuwenhoek       Date:  2016-10-12       Impact factor: 2.271

3.  Assessment of microbiota present on a Portuguese historical stone convent using high-throughput sequencing approaches.

Authors:  Tânia Rosado; Luís Dias; Mónica Lança; Carla Nogueira; Rita Santos; Maria Rosário Martins; António Candeias; José Mirão; Ana Teresa Caldeira
Journal:  Microbiologyopen       Date:  2020-04-30       Impact factor: 3.139

Review 4.  Early-diverging fungal phyla: taxonomy, species concept, ecology, distribution, anthropogenic impact, and novel phylogenetic proposals.

Authors:  Kerstin Voigt; Timothy Y James; Paul M Kirk; André L C M de A Santiago; Bruce Waldman; Gareth W Griffith; Minjie Fu; Renate Radek; Jürgen F H Strassert; Christian Wurzbacher; Gustavo Henrique Jerônimo; David R Simmons; Kensuke Seto; Eleni Gentekaki; Vedprakash G Hurdeal; Kevin D Hyde; Thuong T T Nguyen; Hyang Burm Lee
Journal:  Fungal Divers       Date:  2021-09-29       Impact factor: 24.902

5.  Anaerobic Fungi Isolated From Bactrian Camel Rumen Contents Have Strong Lignocellulosic Bioconversion Potential.

Authors:  Yihan Xue; Rui Shen; Yuqi Li; Zhanying Sun; Xiaoni Sun; Fengming Li; Xiaobin Li; Yanfen Cheng; Weiyun Zhu
Journal:  Front Microbiol       Date:  2022-07-19       Impact factor: 6.064

6.  Associative patterns among anaerobic fungi, methanogenic archaea, and bacterial communities in response to changes in diet and age in the rumen of dairy cows.

Authors:  Sanjay Kumar; Nagaraju Indugu; Bonnie Vecchiarelli; Dipti W Pitta
Journal:  Front Microbiol       Date:  2015-07-31       Impact factor: 5.640

Review 7.  PCR and Omics Based Techniques to Study the Diversity, Ecology and Biology of Anaerobic Fungi: Insights, Challenges and Opportunities.

Authors:  Joan E Edwards; Robert J Forster; Tony M Callaghan; Veronika Dollhofer; Sumit S Dagar; Yanfen Cheng; Jongsoo Chang; Sandra Kittelmann; Katerina Fliegerova; Anil K Puniya; John K Henske; Sean P Gilmore; Michelle A O'Malley; Gareth W Griffith; Hauke Smidt
Journal:  Front Microbiol       Date:  2017-09-25       Impact factor: 5.640

8.  Hydrolysis of untreated lignocellulosic feedstock is independent of S-lignin composition in newly classified anaerobic fungal isolate, Piromyces sp. UH3-1.

Authors:  Casey A Hooker; Ethan T Hillman; Jonathan C Overton; Adrian Ortiz-Velez; Makayla Schacht; Abigail Hunnicutt; Nathan S Mosier; Kevin V Solomon
Journal:  Biotechnol Biofuels       Date:  2018-10-27       Impact factor: 6.040

Review 9.  Nucleotide and protein researches on anaerobic fungi during four decades.

Authors:  Jongsoo Chang; Hyunjin Park
Journal:  J Anim Sci Technol       Date:  2020-03-31

Review 10.  Anaerobic Fungi: Past, Present, and Future.

Authors:  Matthias Hess; Shyam S Paul; Anil K Puniya; Mark van der Giezen; Claire Shaw; Joan E Edwards; Kateřina Fliegerová
Journal:  Front Microbiol       Date:  2020-10-21       Impact factor: 5.640

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.