Literature DB >> 21776994

Challenge of large-scale motion for residual dipolar coupling based analysis of configuration: the case of fibrosterol sulfate A.

Han Sun1, Uwe M Reinscheid, Emily L Whitson, Edward J d'Auvergne, Chris M Ireland, Armando Navarro-Vázquez, Christian Griesinger.   

Abstract

Fibrosterol sulfate A is a polysulfated bis-steroid with an atypical side chain. Due to the flexibility of the linker, large-scale motions that change dramatically the shape of the entire molecule are expected. Such motions pose major challenges to the structure elucidation and the correct determination of configuration. In this study, we will describe the determination of the relative configuration of fibrosterol sulfate A through a residual dipolar coupling based multiple alignment tensor analysis complemented by molecular dynamics. For completeness, we applied also the single tensor approach which is unreliable due to the large-scale motions and compare the results.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21776994      PMCID: PMC3173584          DOI: 10.1021/ja205295q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  41 in total

1.  Accurate determination of small one-bond heteronuclear residual dipolar couplings by F1 coupled HSQC modified with a G-BIRD(r) module.

Authors:  Krisztina Fehér; Stefan Berger; Katalin E Kövér
Journal:  J Magn Reson       Date:  2003-08       Impact factor: 2.229

2.  A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6.

Authors:  Chris Oostenbrink; Alessandra Villa; Alan E Mark; Wilfred F van Gunsteren
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

3.  A DMSO-compatible orienting medium: towards the investigation of the stereochemistry of natural products.

Authors:  Peter Haberz; Jonathan Farjon; Christian Griesinger
Journal:  Angew Chem Int Ed Engl       Date:  2005-01-07       Impact factor: 15.336

4.  A structural model for unfolded proteins from residual dipolar couplings and small-angle x-ray scattering.

Authors:  Pau Bernadó; Laurence Blanchard; Peter Timmins; Dominique Marion; Rob W H Ruigrok; Martin Blackledge
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-11       Impact factor: 11.205

5.  Stretched poly(acrylonitrile) as a scalable alignment medium for DMSO.

Authors:  Grit Kummerlöwe; Jörg Auernheimer; Andreas Lendlein; Burkhard Luy
Journal:  J Am Chem Soc       Date:  2007-04-21       Impact factor: 15.419

6.  DFT/NMR integrated approach: a valid support to the total synthesis of chiral molecules.

Authors:  Maria Giovanna Chini; Raffaele Riccio; Giuseppe Bifulco
Journal:  Magn Reson Chem       Date:  2008-10       Impact factor: 2.447

7.  Residual dipolar couplings of freely rotating groups in small molecules. Stereochemical assignment and side-chain conformation of 8-phenylmenthol.

Authors:  Víctor M Sánchez-Pedregal; Raquel Santamaría-Fernández; Armando Navarro-Vázquez
Journal:  Org Lett       Date:  2009-04-02       Impact factor: 6.005

8.  The CLIP/CLAP-HSQC: pure absorptive spectra for the measurement of one-bond couplings.

Authors:  Andreas Enthart; J Christoph Freudenberger; Julien Furrer; Horst Kessler; Burkhard Luy
Journal:  J Magn Reson       Date:  2008-03-21       Impact factor: 2.229

9.  Conformational analysis of an isoquinolinium hydrochloride in water using residual dipolar couplings.

Authors:  Pablo Trigo-Mouriño; Raquel Santamaría-Fernández; Víctor M Sánchez-Pedregal; Armando Navarro-Vázquez
Journal:  J Org Chem       Date:  2010-05-07       Impact factor: 4.354

10.  Pivotal Advance: PKCzeta is required for migration of macrophages.

Authors:  Hua Guo; Yongjie Ma; Baogang Zhang; Baocun Sun; Ruifang Niu; Guoguang Ying; Ning Zhang
Journal:  J Leukoc Biol       Date:  2009-02-06       Impact factor: 4.962

View more
  6 in total

1.  Progressive Stereo Locking (PSL): A Residual Dipolar Coupling Based Force Field Method for Determining the Relative Configuration of Natural Products and Other Small Molecules.

Authors:  Gabriel Cornilescu; René F Ramos Alvarenga; Thomas P Wyche; Tim S Bugni; Roberto R Gil; Claudia C Cornilescu; William M Westler; John L Markley; Charles D Schwieters
Journal:  ACS Chem Biol       Date:  2017-07-12       Impact factor: 5.100

2.  NMR structure of a heterodimeric SAM:SAM complex: characterization and manipulation of EphA2 binding reveal new cellular functions of SHIP2.

Authors:  Hyeong J Lee; Prasanta K Hota; Preeti Chugha; Hong Guo; Hui Miao; Liqun Zhang; Soon-Jeung Kim; Lukas Stetzik; Bing-Cheng Wang; Matthias Buck
Journal:  Structure       Date:  2012-01-11       Impact factor: 5.006

Review 3.  Residual Dipolar Couplings in Structure Determination of Natural Products.

Authors:  Gao-Wei Li; Han Liu; Feng Qiu; Xiao-Juan Wang; Xin-Xiang Lei
Journal:  Nat Prod Bioprospect       Date:  2018-06-25

4.  Configuration determination by residual dipolar couplings: accessing the full conformational space by molecular dynamics with tensorial constraints.

Authors:  Pavleta Tzvetkova; Ulrich Sternberg; Thomas Gloge; Armando Navarro-Vázquez; Burkhard Luy
Journal:  Chem Sci       Date:  2019-07-29       Impact factor: 9.825

5.  Conformational Investigations in Flexible Molecules Using Orientational NMR Constraints in Combination with 3J-Couplings and NOE Distances.

Authors:  Christophe Farès; Julia B Lingnau; Cornelia Wirtz; Ulrich Sternberg
Journal:  Molecules       Date:  2019-12-03       Impact factor: 4.411

6.  The Use of a Combination of RDC and Chiroptical Spectroscopy for Determination of the Absolute Configuration of Fusariumin A from the Fungus Fusarium sp.

Authors:  Liang-Yan Liu; Han Sun; Christian Griesinger; Ji-Kai Liu
Journal:  Nat Prod Bioprospect       Date:  2016-01-20
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.