Literature DB >> 21775672

The pivotal twin histidines and aromatic triad of the Escherichia coli ammonium channel AmtB can be replaced.

Jason A Hall1, Sydney Kustu.   

Abstract

In Escherichia coli, each subunit of the trimeric channel protein AmtB carries a hydrophobic pore for transport of NH(4)(+) across the cytoplasmic membrane. Positioned along this substrate conduction pathway are two conserved elements--a pair of hydrogen-bonded histidines (H168/H318) located within the pore itself and a set of aromatic residues (F107/W148/F215) at its periplasmic entrance--thought to be critical to AmtB function. Using site-directed mutagenesis and suppressor genetics, we examined the requirement for these elements in NH(4)(+) transport. This analysis shows that AmtB can accommodate, by either direct substitution or suppressor generation, acidic residues at one or both positions of the H168/H318 twin-histidine site while retaining near wild-type activity. Similarly, study of the F107/W148/F215 triad indicates that good-to-excellent AmtB function is preserved upon individual and simultaneous replacement of these aromatic amino acids with aliphatic residues. Our findings lead us to conclude that these elements and their component parts are not required for AmtB function, but instead serve to optimize its performance.

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Year:  2011        PMID: 21775672      PMCID: PMC3156211          DOI: 10.1073/pnas.1108451108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

Review 1.  Molecular mechanisms of ammonium transport and accumulation in plants.

Authors:  Uwe Ludewig; Benjamin Neuhäuser; Marek Dynowski
Journal:  FEBS Lett       Date:  2007-03-22       Impact factor: 4.124

2.  Substrate binding, deprotonation, and selectivity at the periplasmic entrance of the Escherichia coli ammonia channel AmtB.

Authors:  Arnaud Javelle; Domenico Lupo; Pierre Ripoche; Tim Fulford; Mike Merrick; Fritz K Winkler
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-24       Impact factor: 11.205

3.  Genetic evidence for an essential oscillation of transmembrane-spanning segment 5 in the Escherichia coli ammonium channel AmtB.

Authors:  William B Inwood; Jason A Hall; Kwang-Seo Kim; Rebecca Fong; Sydney Kustu
Journal:  Genetics       Date:  2009-11-02       Impact factor: 4.562

4.  Inhibitory complex of the transmembrane ammonia channel, AmtB, and the cytosolic regulatory protein, GlnK, at 1.96 A.

Authors:  Franz Gruswitz; Joseph O'Connell; Robert M Stroud
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-26       Impact factor: 11.205

5.  The mechanism of ammonia transport based on the crystal structure of AmtB of Escherichia coli.

Authors:  Lei Zheng; Dirk Kostrewa; Simon Bernèche; Fritz K Winkler; Xiao-Dan Li
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-24       Impact factor: 11.205

6.  Physiological role for the GlnK protein of enteric bacteria: relief of NifL inhibition under nitrogen-limiting conditions.

Authors:  L He; E Soupene; A Ninfa; S Kustu
Journal:  J Bacteriol       Date:  1998-12       Impact factor: 3.490

7.  Distinct transport mechanisms in yeast ammonium transport/sensor proteins of the Mep/Amt/Rh family and impact on filamentation.

Authors:  Mélanie Boeckstaens; Bruno André; Anna Maria Marini
Journal:  J Biol Chem       Date:  2008-05-28       Impact factor: 5.157

8.  Some properties of a new electrogenic transport system: the ammonium (methylammonium) carrier from Clostridium pasteurianum.

Authors:  D Kleiner; E Fitzke
Journal:  Biochim Biophys Acta       Date:  1981-02-20

9.  The crystal structure of the Escherichia coli AmtB-GlnK complex reveals how GlnK regulates the ammonia channel.

Authors:  Matthew J Conroy; Anne Durand; Domenico Lupo; Xiao-Dan Li; Per A Bullough; Fritz K Winkler; Mike Merrick
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-12       Impact factor: 11.205

10.  CAVER: a new tool to explore routes from protein clefts, pockets and cavities.

Authors:  Martin Petrek; Michal Otyepka; Pavel Banás; Pavlína Kosinová; Jaroslav Koca; Jirí Damborský
Journal:  BMC Bioinformatics       Date:  2006-06-22       Impact factor: 3.169

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  14 in total

1.  A twin histidine motif is the core structure for high-affinity substrate selection in plant ammonium transporters.

Authors:  Pascal Ganz; Toyosi Ijato; Romano Porras-Murrilo; Nils Stührwohldt; Uwe Ludewig; Benjamin Neuhäuser
Journal:  J Biol Chem       Date:  2020-01-27       Impact factor: 5.157

2.  Direct observation of electrogenic NH4(+) transport in ammonium transport (Amt) proteins.

Authors:  Tobias Wacker; Juan J Garcia-Celma; Philipp Lewe; Susana L A Andrade
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-23       Impact factor: 11.205

3.  The molecular basis of K+ exclusion by the Escherichia coli ammonium channel AmtB.

Authors:  Jason A Hall; Dalai Yan
Journal:  J Biol Chem       Date:  2013-04-01       Impact factor: 5.157

4.  Molecular characterization of two Rhesus glycoproteins from the euryhaline freshwater white-rimmed stingray, Himantura signifer, and changes in their transcript levels and protein abundance in the gills, kidney, and liver during brackish water acclimation.

Authors:  Cheng T Yeam; You R Chng; Jasmine L Y Ong; Wai P Wong; Shit F Chew; Yuen K Ip
Journal:  J Comp Physiol B       Date:  2017-03-21       Impact factor: 2.200

Review 5.  Switching substrate specificity of AMT/MEP/ Rh proteins.

Authors:  Benjamin Neuhäuser; Marek Dynowski; Uwe Ludewig
Journal:  Channels (Austin)       Date:  2014       Impact factor: 2.581

6.  The ctenidium of the giant clam, Tridacna squamosa, expresses an ammonium transporter 1 that displays light-suppressed gene and protein expression and may be involved in ammonia excretion.

Authors:  Mel V Boo; Kum C Hiong; Enan J K Goh; Celine Y L Choo; Wai P Wong; Shit F Chew; Yuen K Ip
Journal:  J Comp Physiol B       Date:  2018-04-24       Impact factor: 2.200

7.  High affinity ammonium transporters: molecular mechanism of action.

Authors:  Omar Pantoja
Journal:  Front Plant Sci       Date:  2012-03-28       Impact factor: 5.753

Review 8.  Nitrogen assimilation in Escherichia coli: putting molecular data into a systems perspective.

Authors:  Wally C van Heeswijk; Hans V Westerhoff; Fred C Boogerd
Journal:  Microbiol Mol Biol Rev       Date:  2013-12       Impact factor: 11.056

9.  Ammonium transport proteins with changes in one of the conserved pore histidines have different performance in ammonia and methylamine conduction.

Authors:  Jinan Wang; Tim Fulford; Qiang Shao; Arnaud Javelle; Huaiyu Yang; Weiliang Zhu; Mike Merrick
Journal:  PLoS One       Date:  2013-05-07       Impact factor: 3.240

10.  A molecular pathway for the egress of ammonia produced by nitrogenase.

Authors:  Ian Dance
Journal:  Sci Rep       Date:  2013-11-18       Impact factor: 4.379

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