Literature DB >> 21772935

Amplitude-modulated sinusoidal microchannels for observing adaptability in C. elegans locomotion.

Archana Parashar1, Roy Lycke, John A Carr, Santosh Pandey.   

Abstract

In this paper, we present a movement-based assay to observe adaptability in Caenorhabditis elegans locomotion behavior. The assay comprises a series of sinusoidal microchannels with a fixed wavelength and modulating (increasing or decreasing) amplitude. The channel width is comparable to the body diameter of the organism. Worms are allowed to enter the channel from the input port and migrate toward the output port. Within channel sections that closely match the worm's natural undulations, the worm movement is relatively quick and steady. As the channel amplitude increases or decreases along the device, the worm faces difficulty in generating the propulsive thrust, begins to slow down and eventually fails to move forward. A set of locomotion parameters (i.e., average forward velocity, number and duration of stops, range of contact angle, and cut-off region) is defined for worm locomotion in modulated sinusoidal channels and extracted from the recorded videos. The device is tested on wild-type C. elegans (N2) and two mutants (lev-8 and unc-38). We anticipate this passive, movement-based assay can be used to screen nematodes showing difference in locomotion phenotype.

Entities:  

Year:  2011        PMID: 21772935      PMCID: PMC3138794          DOI: 10.1063/1.3604391

Source DB:  PubMed          Journal:  Biomicrofluidics        ISSN: 1932-1058            Impact factor:   2.800


  25 in total

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Authors:  Adam C Miller; Tod R Thiele; Serge Faumont; Marin L Moravec; Shawn R Lockery
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2.  Dissecting a circuit for olfactory behaviour in Caenorhabditis elegans.

Authors:  Sreekanth H Chalasani; Nikos Chronis; Makoto Tsunozaki; Jesse M Gray; Daniel Ramot; Miriam B Goodman; Cornelia I Bargmann
Journal:  Nature       Date:  2007-11-01       Impact factor: 49.962

3.  Microfluidic system for on-chip high-throughput whole-animal sorting and screening at subcellular resolution.

Authors:  Christopher B Rohde; Fei Zeng; Ricardo Gonzalez-Rubio; Matthew Angel; Mehmet Fatih Yanik
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-21       Impact factor: 11.205

Review 4.  Microfluidics-enabled phenotyping, imaging, and screening of multicellular organisms.

Authors:  Matthew M Crane; Kwanghun Chung; Jeffrey Stirman; Hang Lu
Journal:  Lab Chip       Date:  2010-04-09       Impact factor: 6.799

5.  Pathogenic bacteria induce aversive olfactory learning in Caenorhabditis elegans.

Authors:  Yun Zhang; Hang Lu; Cornelia I Bargmann
Journal:  Nature       Date:  2005-11-10       Impact factor: 49.962

6.  Material properties of Caenorhabditis elegans swimming at low Reynolds number.

Authors:  J Sznitman; Prashant K Purohit; P Krajacic; T Lamitina; P E Arratia
Journal:  Biophys J       Date:  2010-02-17       Impact factor: 4.033

7.  Analysis of nematode mechanics by piezoresistive displacement clamp.

Authors:  Sung-Jin Park; Miriam B Goodman; Beth L Pruitt
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-25       Impact factor: 11.205

8.  Artificial dirt: microfluidic substrates for nematode neurobiology and behavior.

Authors:  S R Lockery; K J Lawton; J C Doll; S Faumont; S M Coulthard; T R Thiele; N Chronis; K E McCormick; M B Goodman; B L Pruitt
Journal:  J Neurophysiol       Date:  2008-03-12       Impact factor: 2.714

9.  Oxygen sensation and social feeding mediated by a C. elegans guanylate cyclase homologue.

Authors:  Jesse M Gray; David S Karow; Hang Lu; Andy J Chang; Jennifer S Chang; Ronald E Ellis; Michael A Marletta; Cornelia I Bargmann
Journal:  Nature       Date:  2004-06-27       Impact factor: 49.962

10.  Neural circuits mediate electrosensory behavior in Caenorhabditis elegans.

Authors:  Christopher V Gabel; Harrison Gabel; Dmitri Pavlichin; Albert Kao; Damon A Clark; Aravinthan D T Samuel
Journal:  J Neurosci       Date:  2007-07-11       Impact factor: 6.167

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  8 in total

1.  An automated microfluidic system for screening Caenorhabditis elegans behaviors using electrotaxis.

Authors:  Dingsheng Liu; Bhagwati Gupta; Ponnambalam Ravi Selvaganapathy
Journal:  Biomicrofluidics       Date:  2016-02-11       Impact factor: 2.800

2.  Multiparameter behavioral analyses provide insights to mechanisms of cyanide resistance in Caenorhabditis elegans.

Authors:  Jenifer N Saldanha; Archana Parashar; Santosh Pandey; Jo Anne Powell-Coffman
Journal:  Toxicol Sci       Date:  2013-06-26       Impact factor: 4.849

3.  An integrated platform enabling optogenetic illumination of Caenorhabditis elegans neurons and muscular force measurement in microstructured environments.

Authors:  Zhichang Qiu; Long Tu; Liang Huang; Taoyuanmin Zhu; Volker Nock; Enchao Yu; Xiao Liu; Wenhui Wang
Journal:  Biomicrofluidics       Date:  2015-02-19       Impact factor: 2.800

4.  Microfluidics-enabled method to identify modes of Caenorhabditis elegans paralysis in four anthelmintics.

Authors:  Roy Lycke; Archana Parashar; Santosh Pandey
Journal:  Biomicrofluidics       Date:  2013-11-06       Impact factor: 2.800

5.  Colored polydimethylsiloxane micropillar arrays for high throughput measurements of forces applied by genetic model organisms.

Authors:  Siddharth M Khare; Anjali Awasthi; V Venkataraman; Sandhya P Koushika
Journal:  Biomicrofluidics       Date:  2015-01-29       Impact factor: 2.800

Review 6.  Microfluidic Approaches for Manipulating, Imaging, and Screening C. elegans.

Authors:  Bhagwati P Gupta; Pouya Rezai
Journal:  Micromachines (Basel)       Date:  2016-07-19       Impact factor: 2.891

7.  Microfluidic Device to Measure the Speed of C. elegans Using the Resistance Change of the Flexible Electrode.

Authors:  Jaehoon Jung; Masahiro Nakajima; Masaru Takeuchi; Zoran Najdovski; Qiang Huang; Toshio Fukuda
Journal:  Micromachines (Basel)       Date:  2016-03-19       Impact factor: 2.891

8.  Caenorhabditis elegans as a model for studies on quinolinic acid-induced NMDAR-dependent glutamatergic disorders.

Authors:  Tássia Limana da Silveira; Marina Lopes Machado; Fabiane Bicca Obetine Baptista; Débora Farina Gonçalves; Diane Duarte Hartmann; Larissa Marafiga Cordeiro; Aline Franzen da Silva; Cristiane Lenz Dalla Corte; Michael Aschner; Felix Alexandre Antunes Soares
Journal:  Brain Res Bull       Date:  2021-07-13       Impact factor: 3.715

  8 in total

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