Literature DB >> 21772785

FigShare.

Jatinder Singh1.   

Abstract

Entities:  

Year:  2011        PMID: 21772785      PMCID: PMC3127351          DOI: 10.4103/0976-500X.81919

Source DB:  PubMed          Journal:  J Pharmacol Pharmacother        ISSN: 0976-500X


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Scientific research activities generate a large amount of data, with most of it not ending up as part of a publication. Among the more common causes of this dilemma is a lack of significance, negative data or data that defy analysis. In numerous instances, even perfectly good data might not be able to withstand the gruelling process of peer review and is thus consigned to the record files. Electronic publishing is silently but surely bringing about a change in the way in which a traditional publication and the process is perceived. The amalgamation of the semantic web, cloud computing and social media sites has begun to make a difference in the manner in which scientists communicate, gather data or share the triumphs and tribulations of their research. A number of dedicated blogs and specialized groups on popular media networks are actively working toward bridging the gap between how science is visualised and the way it works in the real world. FigShare (www.figshare.com) is the brainchild of Mark Hahnel, who realised that a large amount of data generated during the course of his PhD would never get published as it did not show any significant difference. He also realised that redoing expensive research experiments and duplicating data could be drastically reduced by simply sharing this already generated data by putting it up in a proper format in a searchable database. The website that has evolved to its present beta version is supported by Systems Institute, an international not-for-profit organization that provides hosting and looks after future expansion needs. Access to content is granted after free registration or an alternative login through one of the popular social media accounts. The facility to upload figures, datasets or media is accomplished in a simple manner similar to that of making an e-mail attachment. Once the image to be uploaded is located, the rest of the information, viz. the authors, the category and tags, are filled in. There is also an option of linking it to the dataset. The dataset and media-uploading process is similar and all uploading activities have the option of adding a description of the experiment and the methodology. A tabbed discussion page is present on each of the upload pages and will prove to be one of the most useful features in order to help refine search and usability features as the amount of data that is stored increases. Once the data is uploaded, it is instantly cited and allotted a persistent identifier based on the Handle System (http://www.handle.net) thus ensuring efficient searches and security of the stored data for long-term access. Different categories of data can be uploaded by individuals on FigShare. Preprints and manuscripts that have yet to go through the process of peer review can be instantly distributed; this allows the authors to receive early feedback and may be helpful in revising and refining the article for final submission. A large number of reputed journals have already started publication of preprints in order to simplify the peer review process and increase the acceptability of the final articles. FigShare also encourages the publication of negative results and data generated from research conducted but not reported (the file drawer effect). This data is available under the Creative Commons Attribution License (CCAL) so that authors retain ownership of the copyright but allow anyone to download, reuse, reprint, modify, distribute and/or copy data from FigShare, provided the original authors and source are cited and included in any publications stemming from the use of this data. All uploaded data is searchable by author name, tag, dataset or media. Figures can be searched by name or by the category that they belong to. In the near future, data stored by FigShare will be available as a “Science Dataset” for the Comprehensive Knowledge Archive Network (http://www.ckan.net), which will make it easy to find, share and reuse open content and data. The website in its present beta version has just been released and is yet to attain popular status. The amount of searchable data is very little, but is growing with each day. The simplicity of the idea and ease of use promises to initiate a revolution in the way that research will be shared and published, defying all geographical boundaries.
  21 in total

1.  A Digital Repository and Execution Platform for Interactive Scholarly Publications in Neuroscience.

Authors:  Victoria Hodge; Mark Jessop; Martyn Fletcher; Michael Weeks; Aaron Turner; Tom Jackson; Colin Ingram; Leslie Smith; Jim Austin
Journal:  Neuroinformatics       Date:  2016-01

2.  Statistical considerations in reporting cardiovascular research.

Authors:  Merry L Lindsey; Gillian A Gray; Susan K Wood; Douglas Curran-Everett
Journal:  Am J Physiol Heart Circ Physiol       Date:  2018-07-20       Impact factor: 4.733

Review 3.  Narrative online guides for the interpretation of digital-pathology images and tissue-atlas data.

Authors:  Rumana Rashid; Yu-An Chen; John Hoffer; Jeremy L Muhlich; Jia-Ren Lin; Robert Krueger; Hanspeter Pfister; Richard Mitchell; Sandro Santagata; Peter K Sorger
Journal:  Nat Biomed Eng       Date:  2021-11-08       Impact factor: 29.234

Review 4.  Best Practices for Making Reproducible Biochemical Models.

Authors:  Veronica L Porubsky; Arthur P Goldberg; Anand K Rampadarath; David P Nickerson; Jonathan R Karr; Herbert M Sauro
Journal:  Cell Syst       Date:  2020-08-26       Impact factor: 10.304

5.  A tale of two drug targets: the evolutionary history of BACE1 and BACE2.

Authors:  Christopher Southan; John M Hancock
Journal:  Front Genet       Date:  2013-12-17       Impact factor: 4.599

6.  PGP repository: a plant phenomics and genomics data publication infrastructure.

Authors:  Daniel Arend; Astrid Junker; Uwe Scholz; Danuta Schüler; Juliane Wylie; Matthias Lange
Journal:  Database (Oxford)       Date:  2016-04-17       Impact factor: 3.451

7.  Preparing Laboratory and Real-World EEG Data for Large-Scale Analysis: A Containerized Approach.

Authors:  Nima Bigdely-Shamlo; Scott Makeig; Kay A Robbins
Journal:  Front Neuroinform       Date:  2016-03-08       Impact factor: 4.081

8.  The BioStudies database-one stop shop for all data supporting a life sciences study.

Authors:  Ugis Sarkans; Mikhail Gostev; Awais Athar; Ehsan Behrangi; Olga Melnichuk; Ahmed Ali; Jasmine Minguet; Juan Camillo Rada; Catherine Snow; Andrew Tikhonov; Alvis Brazma; Johanna McEntyre
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

9.  Are there statistical links between the direction of European weather systems and ENSO, the solar cycle or stratospheric aerosols?

Authors:  Benjamin A Laken; Frode Stordal
Journal:  R Soc Open Sci       Date:  2016-02-17       Impact factor: 2.963

10.  Benzylsuccinate Synthase is Post-Transcriptionally Regulated in the Toluene-Degrading Denitrifier Magnetospirillum sp. Strain 15-1.

Authors:  Ingrid Meyer-Cifuentes; Sylvie Gruhl; Sven-Bastiaan Haange; Vanessa Lünsmann; Nico Jehmlich; Martin von Bergen; Hermann J Heipieper; Jochen A Müller
Journal:  Microorganisms       Date:  2020-05-07
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