| Literature DB >> 21771975 |
Chia-Min Chung1, Tsung-Hsien Lin, Jaw-Wen Chen, Hsin-Bang Leu, Hsin-Chou Yang, Hung-Yun Ho, Chih-Tai Ting, Sheng-Hsiung Sheu, Wei-Chuan Tsai, Jyh-Hong Chen, Shing-Jong Lin, Yuan-Tsong Chen, Wen-Harn Pan.
Abstract
OBJECTIVE: The plasma adiponectin level, a potential upstream and internal facet of metabolic and cardiovascular diseases, has a reasonably high heritability. Whether other novel genes influence the variation in adiponectin level and the roles of these genetic variants on subsequent clinical outcomes has not been thoroughly investigated. Therefore, we aimed not only to identify genetic variants modulating plasma adiponectin levels but also to investigate whether these variants are associated with adiponectin-related metabolic traits and cardiovascular diseases. RESEARCH DESIGN AND METHODS: We conducted a genome-wide association study (GWAS) to identify quantitative trait loci (QTL) associated with high molecular weight forms of adiponectin levels by genotyping 382 young-onset hypertensive (YOH) subjects with Illumina HumanHap550 SNP chips. The culpable single nucleotide polymorphism (SNP) variants responsible for lowered adiponectin were then confirmed in another 559 YOH subjects, and the association of these SNP variants with the risk of metabolic syndrome (MS), type 2 diabetes mellitus (T2DM), and ischemic stroke was examined in an independent community-based prospective cohort, the CardioVascular Disease risk FACtors Two-township Study (CVDFACTS, n = 3,350).Entities:
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Year: 2011 PMID: 21771975 PMCID: PMC3161336 DOI: 10.2337/db10-1321
Source DB: PubMed Journal: Diabetes ISSN: 0012-1797 Impact factor: 9.461
Characteristics of the study subjects in the first two stages
| Characteristic | Initial stage | Second stage | |
|---|---|---|---|
| 382 | 559 | ||
| Male (%) | 68 | 69 | 0.67 |
| Age (years) | 38.4 ± 0.4 | 42.9 ± 0.2 | <0.0001 |
| BMI (kg/m2) | 26.2 ± 0.2 | 26.7 ± 0.1 | 0.03 |
| LDL (mg/dL) | 126.2 ± 1.7 | 126.2 ± 1.3 | 0.97 |
| Adiponectin (μg/mL) | 4.1 ± 0.23 | 4.2 ± 0.17 | 0.81 |
| Smoking status (%) | 21.9 | 24.7 | 0.36 |
Data are given in percentage or mean ± SE.
†A t or χ2 test was used to make comparisons between the first- and second-stage samples in the GWAS with a significance level set at P = 0.05.
FIG. 1.Illumina HumanHap550 SNPs associated with adiponectin levels in the GWAS. The GLM was used to examine associations between SNPs and adiponectin levels after adjusting for age, sex, BMI, and smoking status with the significance level set at –log P = 7 (gray dashed horizontal line).
Association between adiponectin levels and SNPs identified at the initial stage, confirmed at the second stage, and some common SNPs of candidate genes
| SNP | Gene | Position | Allele | MAF | β (SE) | Initial stage ( | Second stage ( | Two stages combined ( |
|---|---|---|---|---|---|---|---|---|
| rs7193788 | Promoter | A/G | 0.398 | 0.254 (0.056) | 4.88 × 10−5 | 1.36 × 10−9 | 0.03 | |
| rs4783244 | Intron 1 | G | 0.298 | 0.346 (0.057) | 7.57 × 10−9 | 5.70 × 10−17 | 9.28 | |
| rs8047711 | Intron 1 | G | 0.204 | 0.323 (0.064) | 4.10 × 10−6 | 6.32 × 10−8 | 0.41 | |
| rs4311394 | Intron 4 | A/G | 0.442 | 0.034 (0.056) | 0.027 | — | — | |
| rs16861194 | Promoter | A/G | 0.139 | −0.03 (0.08) | 0.648 | — | — | |
| rs3774262 | Intron 2 | A/G | 0.279 | −0.07 (0.06) | 0.529 | — | — | |
| rs10753929 | Intron 2 | C/T | 0.096 | 0.118 (0.099) | 0.03 | — | — | |
| rs4766413 | Intron 1 | A/G | 0.298 | −0.067 (0.063) | 0.128 | — | — |
Major allele/minor allele. MAF, minor allele frequency; β, estimated effect size.
*Allele with higher adiponectin value.
†SNPs reported in previous studies.
‡The most significant SNPs in adiponectin receptor found by the authors.
§Statistics corresponding to GLM testing association between genotypes and adiponectin levels after adjustments for age, sex, BMI, and smoking in the first-stage study comprising 382 subjects.
||Statistics corresponding to GLM testing association between genotypes and adiponectin levels after adjustment for age, sex, BMI, and smoking in the second-stage confirmatory study comprising 559 subjects.
¶R2 was obtained by conducting multiple regression analysis for the samples obtained from both the first and second stages.
#SNP was not replicated in the second stage.
Associations between genotypes of rs4783244 on CDH13 and metabolic parameters
| Trait | rs4783244 | |||
|---|---|---|---|---|
| G/G ( | G/T ( | T/T ( | ||
| Mean ± SD | ||||
| TG (mg/dL) | 110.72 ± 2.3 | 111.90 ± 2.8 | 98.3 ± 3.8 | 0.010 |
| WC (cm) | 81.50 ± 9.6 | 80.59 ± 9.1 | 80.29 ± 9.4 | 0.014 |
| Glucose (mg/dL) | 100.48 ± 22.5 | 99.50 ± 20.6 | 97.78 ± 17.1 | 0.024 |
| HDL-cholesterol (mg/dL) | 42.65 ± 11.8 | 42.60 ± 12.2 | 43.48 ± 11.9 | 0.554 |
| OR (95% CI) | ||||
| Hypertension | 1.28 (0.97–1.69) | 1.18 (0.90–1.55) | 1 | |
| MS | 1.42 (1.04–1.95) | 1.30 (0.95–1.79) | 1 | |
TG, glucose, and HDL-cholesterol levels and WC were averaged by genotypes of rs4783244.
†P values were obtained from logistic regression analysis with adjustments for age, sex, and smoking.
Associations between genotypes of rs4783244 on CDH13 and HOMA-IR and the risk of diabetes
| Trait | Sex | rs4783244 | |||
|---|---|---|---|---|---|
| G/G | G/T | T/T | |||
| Mean ± SD ( | |||||
| HOMA-IR | Male | 1.67 ± 0.53 (494) | 1.65 ± 0.52 (468) | 1.54 ± 0.39 (175) | 0.033 |
| HOMA-IR | Female | 1.69 ± 0.52 (793) | 1.69 ± 0.52 (803) | 1.70 ± 0.53 (175) | 0.700 |
| OR (95% CI) | |||||
| DM | Male | 3.25 (1.15–9.19) | 3.50 (1.24–9.8) | 1 | |
| DM | Female | 1.51 (0.6–2.22) | 0.98 (0.5–1.91) | 1 | |
HOMA-IR stratified by sex was averaged by genotypes of rs4783244. DM, diabetes mellitus.
†P values were obtained from GLM with adjustments for age and smoking.
‡P values were obtained from logistic regression analysis with adjustments for age and smoking.
Associations between rs4783244 on CDH13 and IMT and the risk of ischemic stroke
| Genotype | No. of subjects | IMT (mm) | Stroke risk | |||
|---|---|---|---|---|---|---|
| Mean (SD) | No. of events | OR (95% CI) | ||||
| rs4783244 | ||||||
| TT | 338 | 0.515 (0.153) | 5 | 1 | ||
| GT | 1,444 | 0.508 (0.159) | 24 | 1.182 (0.445–3.139) | 0.737 | |
| GG | 1,469 | 0.524 (0.211) | 0.048 | 50 | 2.436 (0.958–6.192) | 0.061 |
| G/T + TT | 1,782 | 0.510 (0.158) | 29 | 1 | ||
| GG | 1,469 | 0.524 (0.211) | 0.026 | 50 | 2.125 (1.332–3.390) | 0.002 |
†P values were obtained from the GLM procedure with adjustments for age, sex, and smoking.
‡P values were obtained from logistic regression analysis with adjustments for age, sex, and smoking.