Literature DB >> 21769246

An EM Algorithm for Fitting a 4-Parameter Logistic Model to Binary Dose-Response Data.

Gregg E Dinse1.   

Abstract

This article is motivated by the need of biological and environmental scientists to fit a popular nonlinear model to binary dose-response data. The 4-parameter logistic model, also known as the Hill model, generalizes the usual logistic regression model to allow the lower and upper response asymptotes to be greater than zero and less than one, respectively. This article develops an EM algorithm, which is naturally suited for maximum likelihood estimation under the Hill model after conceptualizing the problem as a mixture of subpopulations in which some subjects respond regardless of dose, some fail to respond regardless of dose, and some respond with a probability that depends on dose. The EM algorithm leads to a pair of functionally independent 2-parameter optimizations and is easy to program. Not only can this approach be computationally appealing compared to simultaneous optimization with respect to all four parameters, but it also facilitates estimating covariances, incorporating predictors, and imposing constraints. This article is motivated by, and the EM algorithm is illustrated with, data from a toxicology study of the dose effects of selenium on the death rates of flies. Other biological and environmental applications, as well as medical and agricultural applications, are also described briefly. Computer code for implementing the EM algorithm is available as supplemental material online.

Entities:  

Year:  2011        PMID: 21769246      PMCID: PMC3137126          DOI: 10.1007/s13253-010-0045-3

Source DB:  PubMed          Journal:  J Agric Biol Environ Stat        ISSN: 1085-7117            Impact factor:   1.524


  3 in total

1.  Application of the four-parameter logistic model to bioassay: comparison with slope ratio and parallel line models.

Authors:  A Vølund
Journal:  Biometrics       Date:  1978-09       Impact factor: 2.571

2.  Effects of treatment-induced mortality and tumor-induced mortality on tests for carcinogenicity in small samples.

Authors:  A J Bailer; C J Portier
Journal:  Biometrics       Date:  1988-06       Impact factor: 2.571

3.  Dose-additive carcinogenicity of a defined mixture of "dioxin-like compounds".

Authors:  Nigel J Walker; Patrick W Crockett; Abraham Nyska; Amy E Brix; Michael P Jokinen; Donald M Sells; James R Hailey; Micheal Easterling; Joseph K Haseman; Ming Yin; Michael E Wyde; John R Bucher; Christopher J Portier
Journal:  Environ Health Perspect       Date:  2005-01       Impact factor: 9.031

  3 in total
  3 in total

1.  Optimal designs based on the maximum quasi-likelihood estimator.

Authors:  Gang Shen; Seung Won Hyun; Weng Kee Wong
Journal:  J Stat Plan Inference       Date:  2016-07-15       Impact factor: 1.111

2.  TiO2 Nanomaterials Non-Controlled Contamination Could Be Hazardous for Normal Cells Located in the Field of Radiotherapy.

Authors:  Yidan Wang; Allan Sauvat; Celine Lacrouts; Jérôme Lebeau; Romain Grall; Marie Hullo; Fabrice Nesslany; Sylvie Chevillard
Journal:  Int J Mol Sci       Date:  2020-01-31       Impact factor: 5.923

3.  An algorithm for computing profile likelihood based pointwise confidence intervals for nonlinear dose-response models.

Authors:  Xiaowei Ren; Jielai Xia
Journal:  PLoS One       Date:  2019-01-25       Impact factor: 3.240

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.