Literature DB >> 21768340

Discrete fracture patterns of virus shells reveal mechanical building blocks.

Irena L Ivanovska1, Roberto Miranda, Jose L Carrascosa, Gijs J L Wuite, Christoph F Schmidt.   

Abstract

Viral shells are self-assembled protein nanocontainers with remarkable material properties. They combine simplicity of construction with toughness and complex functionality. These properties make them interesting for bionanotechnology. To date we know little about how virus structure determines assembly pathways and shell mechanics. We have here used atomic force microscopy to study structural failure of the shells of the bacteriophage Φ29. We observed rigidity patterns following the symmetry of the capsid proteins. Under prolonged force exertion, we observed fracture along well-defined lines of the 2D crystal lattice. The mechanically most stable building block of the shells was a trimer. Our approach of "reverse engineering" the virus shells thus made it possible to identify stable structural intermediates. Such stable intermediates point to a hierarchy of interactions among equal building blocks correlated with distinct next-neighbor interactions. The results also demonstrate that concepts from macroscopic materials science, such as fracture, can be usefully employed in molecular engineering.

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Year:  2011        PMID: 21768340      PMCID: PMC3150942          DOI: 10.1073/pnas.1105586108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

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Authors:  W R Wikoff; J E Johnson
Journal:  Curr Biol       Date:  1999-04-22       Impact factor: 10.834

2.  Physical principles in the construction of regular viruses.

Authors:  D L CASPAR; A KLUG
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1962

3.  Conservation of the capsid structure in tailed dsDNA bacteriophages: the pseudoatomic structure of phi29.

Authors:  Marc C Morais; Kyung H Choi; Jaya S Koti; Paul R Chipman; Dwight L Anderson; Michael G Rossmann
Journal:  Mol Cell       Date:  2005-04-15       Impact factor: 17.970

4.  Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry.

Authors:  Andrei Fokine; Petr G Leiman; Mikhail M Shneider; Bijan Ahvazi; Karen M Boeshans; Alasdair C Steven; Lindsay W Black; Vadim V Mesyanzhinov; Michael G Rossmann
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-06       Impact factor: 11.205

5.  Structural and mechanical study of a self-assembling protein nanotube.

Authors:  J F Graveland-Bikker; I A T Schaap; C F Schmidt; C G de Kruif
Journal:  Nano Lett       Date:  2006-04       Impact factor: 11.189

6.  Nanoindentation studies of full and empty viral capsids and the effects of capsid protein mutations on elasticity and strength.

Authors:  J P Michel; I L Ivanovska; M M Gibbons; W S Klug; C M Knobler; G J L Wuite; C F Schmidt
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-10       Impact factor: 11.205

7.  Viruses: making friends with old foes.

Authors:  Trevor Douglas; Mark Young
Journal:  Science       Date:  2006-05-12       Impact factor: 47.728

8.  Energetics of quasiequivalence: computational analysis of protein-protein interactions in icosahedral viruses.

Authors:  V S Reddy; H A Giesing; R T Morton; A Kumar; C B Post; C L Brooks; J E Johnson
Journal:  Biophys J       Date:  1998-01       Impact factor: 4.033

9.  A quasi-atomic model of human adenovirus type 5 capsid.

Authors:  Céline M S Fabry; Manuel Rosa-Calatrava; James F Conway; Chloé Zubieta; Stephen Cusack; Rob W H Ruigrok; Guy Schoehn
Journal:  EMBO J       Date:  2005-04-21       Impact factor: 11.598

10.  Structural transitions during bacteriophage HK97 head assembly.

Authors:  R L Duda; J Hempel; H Michel; J Shabanowitz; D Hunt; R W Hendrix
Journal:  J Mol Biol       Date:  1995-04-07       Impact factor: 5.469

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  18 in total

1.  On the morphology of viral capsids: elastic properties and buckling transitions.

Authors:  Eric R May; Charles L Brooks
Journal:  J Phys Chem B       Date:  2012-03-27       Impact factor: 2.991

2.  Mechanics of Virus-like Particles Labeled with Green Fluorescent Protein.

Authors:  Johann Mertens; Patricia Bondia; Carolina Allende-Ballestero; José L Carrascosa; Cristina Flors; José R Castón
Journal:  Biophys J       Date:  2018-09-01       Impact factor: 4.033

3.  Integrin and defensin modulate the mechanical properties of adenovirus.

Authors:  Joost Snijder; Vijay S Reddy; Eric R May; Wouter H Roos; Glen R Nemerow; Gijs J L Wuite
Journal:  J Virol       Date:  2012-12-26       Impact factor: 5.103

4.  Mechanical elasticity as a physical signature of conformational dynamics in a virus particle.

Authors:  Milagros Castellanos; Rebeca Pérez; Carolina Carrasco; Mercedes Hernando-Pérez; Julio Gómez-Herrero; Pedro J de Pablo; Mauricio G Mateu
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-12       Impact factor: 11.205

5.  Mechanical stability and reversible fracture of vault particles.

Authors:  Aida Llauró; Pablo Guerra; Nerea Irigoyen; José F Rodríguez; Núria Verdaguer; Pedro J de Pablo
Journal:  Biophys J       Date:  2014-02-04       Impact factor: 4.033

6.  Direct visualization of single virus restoration after damage in real time.

Authors:  Pedro J de Pablo; Mercedes Hernando-Pérez; Carolina Carrasco; José L Carrascosa
Journal:  J Biol Phys       Date:  2018-04-13       Impact factor: 1.365

7.  Cross-linking measurements of the Potato leafroll virus reveal protein interaction topologies required for virion stability, aphid transmission, and virus-plant interactions.

Authors:  Juan D Chavez; Michelle Cilia; Chad R Weisbrod; Ho-Jong Ju; Jimmy K Eng; Stewart M Gray; James E Bruce
Journal:  J Proteome Res       Date:  2012-03-30       Impact factor: 4.466

8.  DNA nanoparticles with core-shell morphology.

Authors:  Preethi L Chandran; Emilios K Dimitriadis; Julianna Lisziewicz; Vlad Speransky; Ferenc Horkay
Journal:  Soft Matter       Date:  2014-08-19       Impact factor: 3.679

9.  Mechanical disassembly of single virus particles reveals kinetic intermediates predicted by theory.

Authors:  Milagros Castellanos; Rebeca Pérez; Pablo J P Carrillo; Pedro J de Pablo; Mauricio G Mateu
Journal:  Biophys J       Date:  2012-06-05       Impact factor: 4.033

Review 10.  Learning from nature - novel synthetic biology approaches for biomaterial design.

Authors:  Anton V Bryksin; Ashley C Brown; Michael M Baksh; M G Finn; Thomas H Barker
Journal:  Acta Biomater       Date:  2014-01-24       Impact factor: 8.947

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