Literature DB >> 21768338

Processive phosphorylation of ERK MAP kinase in mammalian cells.

Kazuhiro Aoki1, Masashi Yamada, Katsuyuki Kunida, Shuhei Yasuda, Michiyuki Matsuda.   

Abstract

The mitogen-activated protein (MAP) kinase pathway is comprised of a three-tiered kinase cascade. The distributive kinetic mechanism of two-site MAP kinase phosphorylation inherently generates a nonlinear switch-like response. However, a linear graded response of MAP kinase has also been observed in mammalian cells, and its molecular mechanism remains unclear. To dissect these input-output behaviors, we quantitatively measured the kinetic parameters involved in the MEK (MAPK/ERK kinase)-ERK MAP kinase signaling module in HeLa cells. Using a numerical analysis based on experimentally determined parameters, we predicted in silico and validated in vivo that ERK is processively phosphorylated in HeLa cells. Finally, we identified molecular crowding as a critical factor that converts distributive phosphorylation into processive phosphorylation. We proposed the term quasi-processive phosphorylation to describe this mode of ERK phosphorylation that is operated under the physiological condition of molecular crowding. The generality of this phenomenon may provide a new paradigm for a diverse set of biochemical reactions including multiple posttranslational modifications.

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Year:  2011        PMID: 21768338      PMCID: PMC3150946          DOI: 10.1073/pnas.1104030108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

Review 1.  Mammalian MAP kinase signalling cascades.

Authors:  L Chang; M Karin
Journal:  Nature       Date:  2001-03-01       Impact factor: 49.962

2.  Graded mode of transcriptional induction in yeast pheromone signalling revealed by single-cell analysis.

Authors:  M A Poritz; S Malmstrom; M K Kim; P J Rossmeissl; A Kamb
Journal:  Yeast       Date:  2001-10       Impact factor: 3.239

3.  A positive-feedback-based bistable 'memory module' that governs a cell fate decision.

Authors:  Wen Xiong; James E Ferrell
Journal:  Nature       Date:  2003-11-27       Impact factor: 49.962

4.  A structural basis for substrate specificities of protein Ser/Thr kinases: primary sequence preference of casein kinases I and II, NIMA, phosphorylase kinase, calmodulin-dependent kinase II, CDK5, and Erk1.

Authors:  Z Songyang; K P Lu; Y T Kwon; L H Tsai; O Filhol; C Cochet; D A Brickey; T R Soderling; C Bartleson; D J Graves; A J DeMaggio; M F Hoekstra; J Blenis; T Hunter; L C Cantley
Journal:  Mol Cell Biol       Date:  1996-11       Impact factor: 4.272

5.  Molecular crowding accelerates fibrillization of alpha-synuclein: could an increase in the cytoplasmic protein concentration induce Parkinson's disease?

Authors:  Mark D Shtilerman; Tomas T Ding; Peter T Lansbury
Journal:  Biochemistry       Date:  2002-03-26       Impact factor: 3.162

Review 6.  The MAP kinase cascade is essential for diverse signal transduction pathways.

Authors:  E Nishida; Y Gotoh
Journal:  Trends Biochem Sci       Date:  1993-04       Impact factor: 13.807

7.  Ordered phosphorylation of p42mapk by MAP kinase kinase.

Authors:  T A Haystead; P Dent; J Wu; C M Haystead; T W Sturgill
Journal:  FEBS Lett       Date:  1992-07-13       Impact factor: 4.124

8.  EGFR activation coupled to inhibition of tyrosine phosphatases causes lateral signal propagation.

Authors:  Andrew R Reynolds; Christian Tischer; Peter J Verveer; Oliver Rocks; Philippe I H Bastiaens
Journal:  Nat Cell Biol       Date:  2003-05       Impact factor: 28.824

9.  Ultrasensitivity in the mitogen-activated protein kinase cascade.

Authors:  C Y Huang; J E Ferrell
Journal:  Proc Natl Acad Sci U S A       Date:  1996-09-17       Impact factor: 11.205

10.  Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades.

Authors:  Nick I Markevich; Jan B Hoek; Boris N Kholodenko
Journal:  J Cell Biol       Date:  2004-01-26       Impact factor: 10.539

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  68 in total

Review 1.  Software for systems biology: from tools to integrated platforms.

Authors:  Samik Ghosh; Yukiko Matsuoka; Yoshiyuki Asai; Kun-Yi Hsin; Hiroaki Kitano
Journal:  Nat Rev Genet       Date:  2011-11-03       Impact factor: 53.242

2.  Membrane clustering and the role of rebinding in biochemical signaling.

Authors:  Andrew Mugler; Aimee Gotway Bailey; Koichi Takahashi; Pieter Rein ten Wolde
Journal:  Biophys J       Date:  2012-03-06       Impact factor: 4.033

3.  Diffusion modifies the connectivity of kinetic schemes for multisite binding and catalysis.

Authors:  Irina V Gopich; Attila Szabo
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-18       Impact factor: 11.205

Review 4.  The coming of age of phosphoproteomics--from large data sets to inference of protein functions.

Authors:  Philippe P Roux; Pierre Thibault
Journal:  Mol Cell Proteomics       Date:  2013-09-13       Impact factor: 5.911

Review 5.  ERK as a model for systems biology of enzyme kinetics in cells.

Authors:  Alan S Futran; A James Link; Rony Seger; Stanislav Y Shvartsman
Journal:  Curr Biol       Date:  2013-11-04       Impact factor: 10.834

6.  Quantitative in vivo fluorescence cross-correlation analyses highlight the importance of competitive effects in the regulation of protein-protein interactions.

Authors:  Wakako Sadaie; Yoshie Harada; Michiyuki Matsuda; Kazuhiro Aoki
Journal:  Mol Cell Biol       Date:  2014-06-23       Impact factor: 4.272

7.  How MAP kinase modules function as robust, yet adaptable, circuits.

Authors:  Tianhai Tian; Angus Harding
Journal:  Cell Cycle       Date:  2014       Impact factor: 4.534

8.  Influence of diffusion on the kinetics of multisite phosphorylation.

Authors:  Irina V Gopich; Attila Szabo
Journal:  Protein Sci       Date:  2015-07-07       Impact factor: 6.725

9.  The robustness of proofreading to crowding-induced pseudo-processivity in the MAPK pathway.

Authors:  Thomas E Ouldridge; Pieter Rein ten Wolde
Journal:  Biophys J       Date:  2014-11-18       Impact factor: 4.033

10.  A two-hit mechanism for sepsis-induced impairment of renal tubule function.

Authors:  Bruns A Watts; Thampi George; Edward R Sherwood; David W Good
Journal:  Am J Physiol Renal Physiol       Date:  2013-01-16
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