Literature DB >> 21767287

Replication of genome-wide association signals of type 2 diabetes in Han Chinese in a prospective cohort.

Yi-Cheng Chang1, Yen-Feng Chiu, Pi-Hua Liu, Kuang-Chung Shih, Ming-Wei Lin, Wayne H-H Sheu, Thomas Quertermous, Jess David Curb, Chano A Hsiung, Wei-Jei Lee, Po-Chu Lee, Yuan-Tsong Chen, Lee-Ming Chuang.   

Abstract

BACKGROUND: A recent genome-wide association study for type 2 diabetes in Han Chinese identified several novel genetic variants. We investigated their associations with quantitative measures to explore the mechanism by which these variants influence glucose homoeostasis. We also examined whether these variants predict progression to diabetes in a large prospective family based Chinese cohort.
METHODS: Five single nucleotide polymorphisms (SNPs) near the protein tyrosine phosphatase, receptor type, D (PTPRD), SRR, MAF/WWOX, and KCNQ1 genes were genotyped in 1138 subjects of Chinese origin from the Stanford Asia-Pacific Program for Hypertension and Insulin Resistance study.
RESULTS: At baseline, the risk-conferring rs7192960 C allele near the MAF/WWOX genes was associated with lower homoeostasis model assessment of β-cell (HOMA-β) (P = 0·01) and second-phase insulin response in oral glucose tolerance test (OGTT) (P = 0·04). The risk-conferring rs2237897 C alleles in the KCNQ1 gene were associated with higher fasting glucose (P = 0·009), lower HOMA-β (P = 0·03), and lower first-phase insulin response in OGTT (P = 0·03). Over an average follow-up period of 5·43 years, participants with the risk-conferring rs17584499 TT genotype in the PTPRD gene were more likely to progress from nondiabetes to diabetes than were noncarriers (hazard ratio: 8·82, P = 4 × 10(-5) ). The risk-conferring T allele in the PTPRD gene was associated with greater increase in homoeostasis model assessment of insulin resistance (HOMA-IR) (P = 0·04) over time. PTPRD gene expression in human adipose tissues was negatively associated with fasting insulin levels and HOMA-IR.
CONCLUSION: Genetic variants near the KCNQ1 and MAF/WWOX genes are associated with reduced insulin secretion. The PTPRD genetic variant appears to be associated with progression to diabetes in Han Chinese, most likely through increased insulin resistance.
© 2012 Blackwell Publishing Ltd.

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Year:  2012        PMID: 21767287     DOI: 10.1111/j.1365-2265.2011.04175.x

Source DB:  PubMed          Journal:  Clin Endocrinol (Oxf)        ISSN: 0300-0664            Impact factor:   3.478


  20 in total

Review 1.  WWOX at the crossroads of cancer, metabolic syndrome related traits and CNS pathologies.

Authors:  C Marcelo Aldaz; Brent W Ferguson; Martin C Abba
Journal:  Biochim Biophys Acta       Date:  2014-06-14

2.  Fine-mapping diabetes-related traits, including insulin resistance, in heterogeneous stock rats.

Authors:  Leah C Solberg Woods; Katie L Holl; Daniel Oreper; Yuying Xie; Shirng-Wern Tsaih; William Valdar
Journal:  Physiol Genomics       Date:  2012-09-04       Impact factor: 3.107

3.  Genetic validation study of protein tyrosine phosphatase receptor type D (PTPRD) gene variants and risk for antipsychotic-induced weight gain.

Authors:  Malgorzata Maciukiewicz; Ilona Gorbovskaya; Arun K Tiwari; Clement C Zai; Natalie Freeman; Herbert Y Meltzer; James L Kennedy; Daniel J Müller
Journal:  J Neural Transm (Vienna)       Date:  2018-09-18       Impact factor: 3.575

4.  Variants of insulin-signaling inhibitor genes in type 2 diabetes and related metabolic abnormalities.

Authors:  Carlo de Lorenzo; Annalisa Greco; Teresa Vanessa Fiorentino; Gaia Chiara Mannino; Marta Letizia Hribal
Journal:  Int J Genomics       Date:  2013-05-23       Impact factor: 2.326

5.  PTPRD silencing by DNA hypermethylation decreases insulin receptor signaling and leads to type 2 diabetes.

Authors:  Yng-Tay Chen; Wei-D Lin; Wen-Lin Liao; Ying-Ju Lin; Jan-Gowth Chang; Fuu-Jen Tsai
Journal:  Oncotarget       Date:  2015-05-30

6.  Association between Gene Polymorphisms of Seven Newly Identified Loci and Type 2 Diabetes and the Correlate Quantitative Traits in Chinese Dong Populations.

Authors:  Liya Liu; Lizhang Chen; Zhanzhan Li; Liang Li; Jian Qu; Jing Xue
Journal:  Iran J Public Health       Date:  2014-10       Impact factor: 1.429

7.  Cross-sectional and longitudinal replication analyses of genome-wide association loci of type 2 diabetes in Han Chinese.

Authors:  Qi Zhao; Jianzhong Xiao; Jiang He; Xuelian Zhang; Jing Hong; Xiaomu Kong; Katherine T Mills; Jianping Weng; Weiping Jia; Wenying Yang
Journal:  PLoS One       Date:  2014-03-17       Impact factor: 3.240

Review 8.  Ant colony optimisation of decision tree and contingency table models for the discovery of gene-gene interactions.

Authors:  Emmanuel Sapin; Ed Keedwell; Tim Frayling
Journal:  IET Syst Biol       Date:  2015-12       Impact factor: 1.615

9.  Strong parent-of-origin effects in the association of KCNQ1 variants with type 2 diabetes in American Indians.

Authors:  Robert L Hanson; Tingwei Guo; Yunhua L Muller; Jamie Fleming; William C Knowler; Sayuko Kobes; Clifton Bogardus; Leslie J Baier
Journal:  Diabetes       Date:  2013-04-29       Impact factor: 9.461

10.  Combining genetic association study designs: a GWAS case study.

Authors:  Janice L Estus; David W Fardo
Journal:  Front Genet       Date:  2013-09-27       Impact factor: 4.772

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