Literature DB >> 21762022

Modular random Boolean networks.

Rodrigo Poblanno-Balp1, Carlos Gershenson.   

Abstract

Random Boolean networks (RBNs) have been a popular model of genetic regulatory networks for more than four decades. However, most RBN studies have been made with random topologies, while real regulatory networks have been found to be modular. In this work, we extend classical RBNs to define modular RBNs. Statistical experiments and analytical results show that modularity has a strong effect on the properties of RBNs. In particular, modular RBNs have more attractors, and are closer to criticality when chaotic dynamics would be expected, than classical RBNs.

Mesh:

Year:  2011        PMID: 21762022     DOI: 10.1162/artl_a_00042

Source DB:  PubMed          Journal:  Artif Life        ISSN: 1064-5462            Impact factor:   0.667


  8 in total

1.  The influence of assortativity on the robustness and evolvability of gene regulatory networks upon gene birth.

Authors:  Dov A Pechenick; Jason H Moore; Joshua L Payne
Journal:  J Theor Biol       Date:  2013-03-28       Impact factor: 2.691

2.  The influence of assortativity on the robustness of signal-integration logic in gene regulatory networks.

Authors:  Dov A Pechenick; Joshua L Payne; Jason H Moore
Journal:  J Theor Biol       Date:  2011-12-08       Impact factor: 2.691

Review 3.  Structural determinants of criticality in biological networks.

Authors:  Sergi Valverde; Sebastian Ohse; Malgorzata Turalska; Bruce J West; Jordi Garcia-Ojalvo
Journal:  Front Physiol       Date:  2015-05-08       Impact factor: 4.566

4.  Phenotypic robustness and the assortativity signature of human transcription factor networks.

Authors:  Dov A Pechenick; Joshua L Payne; Jason H Moore
Journal:  PLoS Comput Biol       Date:  2014-08-14       Impact factor: 4.475

5.  Self-organization of self-clearing beating patterns in an array of locally interacting ciliated cells formulated as an adaptive Boolean network.

Authors:  Martin Schneiter; Jaroslav Rička; Martin Frenz
Journal:  Theory Biosci       Date:  2019-07-26       Impact factor: 1.919

6.  Antifragility Predicts the Robustness and Evolvability of Biological Networks through Multi-Class Classification with a Convolutional Neural Network.

Authors:  Hyobin Kim; Stalin Muñoz; Pamela Osuna; Carlos Gershenson
Journal:  Entropy (Basel)       Date:  2020-09-04       Impact factor: 2.524

Review 7.  Mechanisms of mutational robustness in transcriptional regulation.

Authors:  Joshua L Payne; Andreas Wagner
Journal:  Front Genet       Date:  2015-10-27       Impact factor: 4.599

8.  Latent phenotypes pervade gene regulatory circuits.

Authors:  Joshua L Payne; Andreas Wagner
Journal:  BMC Syst Biol       Date:  2014-05-30
  8 in total

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