Literature DB >> 21761179

Signals of LOV1: a computer simulation study on the wildtype LOV1-domain of Chlamydomonas reinhardtii and its mutants.

Emanuel Peter1, Bernhard Dick, Stephan A Baeurle.   

Abstract

Phototropins are photoreceptors regulating the blue-light response in plants and bacteria. They consist of two LOV (light oxygen voltage sensitive) domains each containing a non-covalently bound flavin-mononucleotide (FMN) chromophore, which are connected to a serine/threonine-kinase. Upon illumination, the LOV-domains undergo conformational changes, triggering a signal cascade in the organism through kinase activation. Here, we present results from molecular dynamics simulations in which we investigate the signal transduction pathway of the wildtype LOV1-domain of Chlamydomonas reinhardtii and a methyl-mercaptan (MM) adduct of its Cys57Gly-mutant at the molecular level. In particular, we analyzed the effect of covalent-bond formation between the reactive cysteine Cys57 and the FMN-reaction center, as well as the subsequent charge redistribution, on the spatio-dynamical behavior of the LOV1-domain. We compare the calculation results with experimental data and demonstrate that these adduct state characteristics have an important influence on the response of this photosensor. The light-induced changes implicate primarily an alteration of the surface charge distribution through rearrangement of the highly flexible Cα-, Dα- and Eα-helices including the Glu51-Lys91-salt bridge on the hydrophilic side of the protein domain and a β-sheet tightening process via coupling of the Aβ- and Bβ-strands. Our findings confirm the aptitude of the LOV1-domain to function as a dimerization partner, allowing the green alga to adapt its reproduction and growth speed to the environmental conditions.

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Year:  2011        PMID: 21761179     DOI: 10.1007/s00894-011-1165-6

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  48 in total

1.  The LOV domain family: photoresponsive signaling modules coupled to diverse output domains.

Authors:  Sean Crosson; Sudarshan Rajagopal; Keith Moffat
Journal:  Biochemistry       Date:  2003-01-14       Impact factor: 3.162

2.  Blue light-regulated molecular switch of Ser/Thr kinase in phototropin.

Authors:  Daisuke Matsuoka; Satoru Tokutomi
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-06       Impact factor: 11.205

Review 3.  The LOV domain: a chromophore module servicing multiple photoreceptors.

Authors:  Winslow R Briggs
Journal:  J Biomed Sci       Date:  2007-03-23       Impact factor: 8.410

4.  Disruption of the LOV-Jalpha helix interaction activates phototropin kinase activity.

Authors:  Shannon M Harper; John M Christie; Kevin H Gardner
Journal:  Biochemistry       Date:  2004-12-28       Impact factor: 3.162

5.  Protein dynamics under light control.

Authors:  Michele Vendruscolo
Journal:  Nat Chem Biol       Date:  2008-08       Impact factor: 15.040

6.  Systematic comparison of empirical forcefields for molecular dynamic simulation of insulin.

Authors:  Nevena Todorova; F Sue Legge; Herbert Treutlein; Irene Yarovsky
Journal:  J Phys Chem B       Date:  2008-08-12       Impact factor: 2.991

7.  Domain swapping to assess the mechanistic basis of Arabidopsis phototropin 1 receptor kinase activation and endocytosis by blue light.

Authors:  Eirini Kaiserli; Stuart Sullivan; Matthew A Jones; Kevin A Feeney; John M Christie
Journal:  Plant Cell       Date:  2009-10-30       Impact factor: 11.277

8.  Comparative investigation of the LOV1 and LOV2 domains in Adiantum phytochrome3.

Authors:  Tatsuya Iwata; Dai Nozaki; Satoru Tokutomi; Hideki Kandori
Journal:  Biochemistry       Date:  2005-05-24       Impact factor: 3.162

9.  Structural basis of a phototropin light switch.

Authors:  Shannon M Harper; Lori C Neil; Kevin H Gardner
Journal:  Science       Date:  2003-09-12       Impact factor: 47.728

10.  A genetically encoded photoactivatable Rac controls the motility of living cells.

Authors:  Yi I Wu; Daniel Frey; Oana I Lungu; Angelika Jaehrig; Ilme Schlichting; Brian Kuhlman; Klaus M Hahn
Journal:  Nature       Date:  2009-08-19       Impact factor: 49.962

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  7 in total

1.  Transient conformational fluctuation of TePixD during a reaction.

Authors:  Kunisato Kuroi; Koji Okajima; Masahiko Ikeuchi; Satoru Tokutomi; Masahide Terazima
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-29       Impact factor: 11.205

2.  Signaling mechanisms of LOV domains: new insights from molecular dynamics studies.

Authors:  Peter L Freddolino; Kevin H Gardner; Klaus Schulten
Journal:  Photochem Photobiol Sci       Date:  2013-07       Impact factor: 3.982

3.  New Light on the Mechanism of Phototransduction in Phototropin.

Authors:  L Henry; O Berntsson; M R Panman; A Cellini; A J Hughes; I Kosheleva; R Henning; S Westenhoff
Journal:  Biochemistry       Date:  2020-08-25       Impact factor: 3.162

4.  Light-induced structural changes in a short light, oxygen, voltage (LOV) protein revealed by molecular dynamics simulations-implications for the understanding of LOV photoactivation.

Authors:  Marco Bocola; Ulrich Schwaneberg; Karl-Erich Jaeger; Ulrich Krauss
Journal:  Front Mol Biosci       Date:  2015-10-01

5.  Revealing Hidden Conformational Space of LOV Protein VIVID Through Rigid Residue Scan Simulations.

Authors:  Hongyu Zhou; Brian D Zoltowski; Peng Tao
Journal:  Sci Rep       Date:  2017-04-20       Impact factor: 4.379

6.  QM calculations predict the energetics and infrared spectra of transient glutamine isomers in LOV photoreceptors.

Authors:  Prokopis C Andrikopoulos; Aditya S Chaudhari; Yingliang Liu; Patrick E Konold; John T M Kennis; Bohdan Schneider; Gustavo Fuertes
Journal:  Phys Chem Chem Phys       Date:  2021-06-30       Impact factor: 3.676

7.  A proposal for a dipole-generated BLUF domain mechanism.

Authors:  Tilo Mathes; Jan P Götze
Journal:  Front Mol Biosci       Date:  2015-11-03
  7 in total

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