Literature DB >> 21760621

Temporal and spatial oscillations in bacteria.

Peter Lenz1, Lotte Søgaard-Andersen.   

Abstract

Oscillations pervade biological systems at all scales. In bacteria, oscillations control fundamental processes, including gene expression, cell cycle progression, cell division, DNA segregation and cell polarity. Oscillations are generated by biochemical oscillators that incorporate the periodic variation in a parameter over time to generate an oscillatory output. Temporal oscillators incorporate the periodic accumulation or activity of a protein to drive temporal cycles such as the cell and circadian cycles. Spatial oscillators incorporate the periodic variation in the localization of a protein to define subcellular positions such as the site of cell division and the localization of DNA. In this Review, we focus on the mechanisms of oscillators and discuss the design principles of temporal and spatial oscillatory systems.

Mesh:

Year:  2011        PMID: 21760621     DOI: 10.1038/nrmicro2612

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  125 in total

1.  MinDE-dependent pole-to-pole oscillation of division inhibitor MinC in Escherichia coli.

Authors:  D M Raskin; P A de Boer
Journal:  J Bacteriol       Date:  1999-10       Impact factor: 3.490

2.  Dynamic compartmentalization of bacteria: accurate division in E. coli.

Authors:  M Howard; A D Rutenberg; S de Vet
Journal:  Phys Rev Lett       Date:  2001-12-10       Impact factor: 9.161

3.  Rapid and sequential movement of individual chromosomal loci to specific subcellular locations during bacterial DNA replication.

Authors:  Patrick H Viollier; Martin Thanbichler; Patrick T McGrath; Lisandra West; Maliwan Meewan; Harley H McAdams; Lucy Shapiro
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-03       Impact factor: 11.205

4.  LdpA: a component of the circadian clock senses redox state of the cell.

Authors:  Natalia B Ivleva; Matthew R Bramlett; Paul A Lindahl; Susan S Golden
Journal:  EMBO J       Date:  2005-03-10       Impact factor: 11.598

5.  A DNA methylation ratchet governs progression through a bacterial cell cycle.

Authors:  Justine Collier; Harley H McAdams; Lucy Shapiro
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-17       Impact factor: 11.205

6.  A sequential program of dual phosphorylation of KaiC as a basis for circadian rhythm in cyanobacteria.

Authors:  Taeko Nishiwaki; Yoshinori Satomi; Yohko Kitayama; Kazuki Terauchi; Reiko Kiyohara; Toshifumi Takao; Takao Kondo
Journal:  EMBO J       Date:  2007-08-23       Impact factor: 11.598

7.  Cell cycle control by an essential bacterial two-component signal transduction protein.

Authors:  K C Quon; G T Marczynski; L Shapiro
Journal:  Cell       Date:  1996-01-12       Impact factor: 41.582

8.  SlmA, a nucleoid-associated, FtsZ binding protein required for blocking septal ring assembly over Chromosomes in E. coli.

Authors:  Thomas G Bernhardt; Piet A J de Boer
Journal:  Mol Cell       Date:  2005-05-27       Impact factor: 17.970

9.  Reversing cells and oscillating motility proteins.

Authors:  Simone Leonardy; Iryna Bulyha; Lotte Søgaard-Andersen
Journal:  Mol Biosyst       Date:  2008-07-25

10.  A fast, robust and tunable synthetic gene oscillator.

Authors:  Jesse Stricker; Scott Cookson; Matthew R Bennett; William H Mather; Lev S Tsimring; Jeff Hasty
Journal:  Nature       Date:  2008-10-29       Impact factor: 49.962

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  27 in total

Review 1.  Structural and dynamic aspects of protein clocks: how can they be so slow and stable?

Authors:  Shuji Akiyama
Journal:  Cell Mol Life Sci       Date:  2012-01-25       Impact factor: 9.261

2.  Critical waves and the length problem of biology.

Authors:  Robert B Laughlin
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-03       Impact factor: 11.205

Review 3.  How do bacteria localize proteins to the cell pole?

Authors:  Géraldine Laloux; Christine Jacobs-Wagner
Journal:  J Cell Sci       Date:  2013-12-17       Impact factor: 5.285

4.  Tuning active emulsion dynamics via surfactants and topology.

Authors:  Shashi Thutupalli; Stephan Herminghaus
Journal:  Eur Phys J E Soft Matter       Date:  2013-08-29       Impact factor: 1.890

5.  Blue light-mediated transcriptional activation and repression of gene expression in bacteria.

Authors:  Premkumar Jayaraman; Kavya Devarajan; Tze Kwang Chua; Hanzhong Zhang; Erry Gunawan; Chueh Loo Poh
Journal:  Nucleic Acids Res       Date:  2016-06-28       Impact factor: 16.971

Review 6.  A functional perspective on phenotypic heterogeneity in microorganisms.

Authors:  Martin Ackermann
Journal:  Nat Rev Microbiol       Date:  2015-07-06       Impact factor: 60.633

7.  Elements of biological oscillations in time and space.

Authors:  Yangxiaolu Cao; Allison Lopatkin; Lingchong You
Journal:  Nat Struct Mol Biol       Date:  2016-12-06       Impact factor: 15.369

8.  Bacterial physiology: uncovering the circadian clockwork.

Authors:  Andrew Jermy
Journal:  Nat Rev Microbiol       Date:  2012-10-08       Impact factor: 60.633

Review 9.  Animal-microbial symbioses in changing environments.

Authors:  Hannah V Carey; Khrystyne N Duddleston
Journal:  J Therm Biol       Date:  2014-02-28       Impact factor: 2.902

10.  A Markovian Approach towards Bacterial Size Control and Homeostasis in Anomalous Growth Processes.

Authors:  Yanyan Chen; Rosa Baños; Javier Buceta
Journal:  Sci Rep       Date:  2018-06-25       Impact factor: 4.379

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