Literature DB >> 21758019

Transcriptomic, proteomic and metabolomic analysis of maize responses to UV-B: comparison of greenhouse and field growth conditions.

Paula Casati1, Mabel Campi, Darren J Morrow, John Fernandes, Virginia Walbot.   

Abstract

UV-B radiation from normal solar fluence elicits physiological and developmental changes in plants under fluctuating environmental conditions. Most UV photobiology studies in plants utilize controlled greenhouse and growth chamber environments in which few conditions vary except the brief presence of UV-B radiation. Our purpose was to compare responses to UV-B in irradiated and shielded maize organs in field (natural solar plus 2x solar supplementation for defined periods) and greenhouse (2x solar supplementation only) conditions during a 4 hour exposure. Three parameters were assessed--transcripts, proteins, and metabolites--to determine the degree of overlap in maize responses in field and greenhouse conditions. We assessed irradiated leaves, and both shielded leaves and immature ears. After comparing transcriptome, proteome and metabolome profiles, we find there are more differences than similarities between field and greenhouse responses.

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Year:  2011        PMID: 21758019      PMCID: PMC3260712          DOI: 10.4161/psb.6.8.15751

Source DB:  PubMed          Journal:  Plant Signal Behav        ISSN: 1559-2316


  19 in total

Review 1.  Statistical design and the analysis of gene expression microarray data.

Authors:  M K Kerr; G A Churchill
Journal:  Genet Res       Date:  2001-04       Impact factor: 1.588

2.  Functional significance and induction by solar radiation of ultraviolet-absorbing sunscreens in field-grown soybean crops.

Authors:  C A Mazza; H E Boccalandro; C V Giordano; D Battista; A L Scopel; C L Ballaré
Journal:  Plant Physiol       Date:  2000-01       Impact factor: 8.340

Review 3.  DNA repair mechanisms in plants: crucial sensors and effectors for the maintenance of genome integrity.

Authors:  Clifford M Bray; Christopher E West
Journal:  New Phytol       Date:  2005-12       Impact factor: 10.151

4.  Genome-wide analysis of high-altitude maize and gene knockdown stocks implicates chromatin remodeling proteins in response to UV-B.

Authors:  Paula Casati; Ann E Stapleton; James E Blum; Virginia Walbot
Journal:  Plant J       Date:  2006-05       Impact factor: 6.417

Review 5.  DNA repair in plants.

Authors:  Seisuke Kimura; Kengo Sakaguchi
Journal:  Chem Rev       Date:  2006-02       Impact factor: 60.622

6.  Plant L10 ribosomal proteins have different roles during development and translation under ultraviolet-B stress.

Authors:  María Lorena Falcone Ferreyra; Alejandro Pezza; Jordane Biarc; Alma L Burlingame; Paula Casati
Journal:  Plant Physiol       Date:  2010-06-01       Impact factor: 8.340

7.  Gene expression profiling in response to ultraviolet radiation in maize genotypes with varying flavonoid content.

Authors:  Paula Casati; Virginia Walbot
Journal:  Plant Physiol       Date:  2003-08       Impact factor: 8.340

8.  Flavonoids can protect maize DNA from the induction of ultraviolet radiation damage.

Authors:  A E Stapleton; V Walbot
Journal:  Plant Physiol       Date:  1994-07       Impact factor: 8.340

9.  Maize lines expressing RNAi to chromatin remodeling factors are similarly hypersensitive to UV-B radiation but exhibit distinct transcriptome responses.

Authors:  Paula Casati; Virginia Walbot
Journal:  Epigenetics       Date:  2008-07-16       Impact factor: 4.528

10.  Rapid transcriptome responses of maize (Zea mays) to UV-B in irradiated and shielded tissues.

Authors:  Paula Casati; Virginia Walbot
Journal:  Genome Biol       Date:  2004-03-01       Impact factor: 13.583

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  6 in total

Review 1.  "Omics" of maize stress response for sustainable food production: opportunities and challenges.

Authors:  Fangping Gong; Le Yang; Fuju Tai; Xiuli Hu; Wei Wang
Journal:  OMICS       Date:  2014-12

2.  Multiple roles for UV RESISTANCE LOCUS8 in regulating gene expression and metabolite accumulation in Arabidopsis under solar ultraviolet radiation.

Authors:  Luis O Morales; Mikael Brosché; Julia Vainonen; Gareth I Jenkins; Jason J Wargent; Nina Sipari; Åke Strid; Anders V Lindfors; Riitta Tegelberg; Pedro J Aphalo
Journal:  Plant Physiol       Date:  2012-12-18       Impact factor: 8.340

3.  Rapid Maize Leaf and Immature Ear Responses to UV-B Radiation.

Authors:  Paula Casati; Darren J Morrow; John F Fernandes; Virginia Walbot
Journal:  Front Plant Sci       Date:  2011-07-25       Impact factor: 5.753

4.  Integrated analysis of transcriptome and metabolome of Arabidopsis albino or pale green mutants with disrupted nuclear-encoded chloroplast proteins.

Authors:  Masakazu Satou; Harumi Enoki; Akira Oikawa; Daisaku Ohta; Kazunori Saito; Takushi Hachiya; Hitoshi Sakakibara; Miyako Kusano; Atsushi Fukushima; Kazuki Saito; Masatomo Kobayashi; Noriko Nagata; Fumiyoshi Myouga; Kazuo Shinozaki; Reiko Motohashi
Journal:  Plant Mol Biol       Date:  2014-05-03       Impact factor: 4.076

5.  Overexpression of GA20-OXIDASE1 impacts plant height, biomass allocation and saccharification efficiency in maize.

Authors:  Wannes Voorend; Hilde Nelissen; Ruben Vanholme; Alex De Vliegher; Frank Van Breusegem; Wout Boerjan; Isabel Roldán-Ruiz; Hilde Muylle; Dirk Inzé
Journal:  Plant Biotechnol J       Date:  2015-09-07       Impact factor: 9.803

6.  Transcriptomic Profiling of Soybean in Response to High-Intensity UV-B Irradiation Reveals Stress Defense Signaling.

Authors:  Min Young Yoon; Moon Young Kim; Sangrae Shim; Kyung Do Kim; Jungmin Ha; Jin Hee Shin; Sungtaeg Kang; Suk-Ha Lee
Journal:  Front Plant Sci       Date:  2016-12-19       Impact factor: 5.753

  6 in total

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