Literature DB >> 21754904

N-Benzyl-6-de-oxy-3,6-imino-methyl-ene-1,2,3,5-O-tetra-acetyl-α-d-1(S)-epiallo-furan-ose.

Qiurong Zhang1, Chunli Wu, Pengyun Li, Weiyan Cheng, Hongmin Liu.   

Abstract

The mol-ecule of the title compound, C(22)H(27)NO(9), an azasugar derivative, consists of one benzene ring and two fused rings, which have the cis arrangement at the ring junctions, and gives a V-shaped geometry. The inter-planar angle between the five- and six-membered rings is 65.69 (11)°. The crystal structure is stablized by weak inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 21754904      PMCID: PMC3120565          DOI: 10.1107/S1600536811019702

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the one-pot reaction used to obtain the title compound, see: Saito et al. (2002 ▶); Deshpandea et al. (2004 ▶). For the activity of aza­sugars, see: Compain et al. (2001 ▶, 2003 ▶). For their powerful inhibitory aptitude towards carbohydrate-processing enzymes, see: Guaragna et al. (2009 ▶).

Experimental

Crystal data

C22H27NO9 M = 449.45 Monoclinic, a = 8.1768 (16) Å b = 9.0613 (18) Å c = 15.591 (3) Å β = 94.56 (3)° V = 1151.5 (4) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 291 K 0.20 × 0.18 × 0.16 mm

Data collection

Rigaku R-AXIS-IV diffractometer Absorption correction: multi-scan (SADABS: Sheldrick, 1996 ▶) T min = 0.980, T max = 0.984 4341 measured reflections 2503 independent reflections 2173 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.107 S = 1.09 2503 reflections 290 parameters 1 restraint H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.13 e Å−3 Data collection: R-AXIS II Software (Rigaku, 1997 ▶); cell refinement: R-AXIS II Software; data reduction: R-AXIS II Software; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008) ▶; software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811019702/zk2010sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811019702/zk2010Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H27NO9F(000) = 476
Mr = 449.45Dx = 1.296 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 399 reflections
a = 8.1768 (16) Åθ = 2–25.1°
b = 9.0613 (18) ŵ = 0.10 mm1
c = 15.591 (3) ÅT = 291 K
β = 94.56 (3)°PRISMATIC, colorless
V = 1151.5 (4) Å30.20 × 0.18 × 0.16 mm
Z = 2
Rigaku R-AXIS-IV diffractometer2503 independent reflections
Radiation source: fine-focus sealed tube2173 reflections with I > 2σ(I)
graphiteRint = 0.033
Detector resolution: 0 pixels mm-1θmax = 26.5°, θmin = 1.3°
Oscillation frames scansh = 0→10
Absorption correction: multi-scan (SADABS: Sheldrick, 1996)k = −11→11
Tmin = 0.980, Tmax = 0.984l = −19→19
4341 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H-atom parameters constrained
wR(F2) = 0.107w = 1/[σ2(Fo2) + (0.0659P)2] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
2503 reflectionsΔρmax = 0.15 e Å3
290 parametersΔρmin = −0.13 e Å3
1 restraintExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.040 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.1159 (3)0.9181 (3)0.34251 (14)0.0450 (6)
O10.5766 (2)1.1411 (2)0.25616 (13)0.0515 (5)
O20.5092 (2)0.8192 (2)0.13055 (12)0.0471 (5)
O30.2300 (2)0.7356 (2)0.19908 (12)0.0439 (5)
O40.3209 (2)1.1154 (2)0.18522 (13)0.0461 (5)
O5−0.0199 (2)1.1524 (2)0.15811 (13)0.0489 (5)
O60.5922 (3)1.3316 (3)0.16484 (19)0.0771 (7)
O70.7528 (3)0.7358 (3)0.18663 (16)0.0700 (7)
O80.4156 (3)0.5948 (3)0.27378 (14)0.0589 (6)
O9−0.1360 (4)1.0104 (3)0.05304 (17)0.0886 (9)
C10.4843 (3)1.0630 (3)0.18939 (19)0.0438 (6)
H1A0.53111.08050.13430.053*
C20.4826 (3)0.8971 (3)0.20843 (16)0.0393 (6)
H2A0.56210.86960.25610.047*
C30.3042 (3)0.8717 (3)0.22978 (17)0.0376 (6)
C40.2149 (3)0.9901 (3)0.17496 (18)0.0391 (6)
H4A0.20620.95910.11460.047*
C50.0450 (3)1.0225 (3)0.20286 (18)0.0428 (6)
H5A−0.02680.93850.18720.051*
C60.0463 (3)1.0483 (4)0.29899 (19)0.0486 (7)
H6A0.11181.13450.31530.058*
H6B−0.06451.06470.31490.058*
C70.2889 (3)0.8982 (3)0.32508 (16)0.0429 (6)
H7A0.33460.81490.35790.052*
H7B0.35090.98550.34330.052*
C80.6243 (3)1.2802 (4)0.2351 (3)0.0569 (8)
C90.7193 (4)1.3524 (5)0.3088 (3)0.0813 (12)
H9A0.75121.44970.29230.122*
H9B0.81551.29510.32510.122*
H9C0.65251.35900.35660.122*
C100.6505 (3)0.7422 (3)0.1276 (2)0.0496 (7)
C110.6557 (5)0.6680 (5)0.0432 (2)0.0733 (10)
H11A0.75650.61390.04200.110*
H11B0.64940.7407−0.00180.110*
H11C0.56460.60130.03450.110*
C120.2937 (3)0.6055 (3)0.2257 (2)0.0473 (7)
C130.1927 (5)0.4817 (4)0.1878 (3)0.0770 (11)
H13A0.23990.38950.20750.115*
H13B0.18990.48620.12620.115*
H13C0.08310.48950.20540.115*
C14−0.1022 (4)1.1307 (4)0.08049 (19)0.0501 (7)
C15−0.1374 (4)1.2725 (4)0.0348 (2)0.0664 (10)
H15A−0.19581.2534−0.01990.100*
H15B−0.03611.32190.02620.100*
H15C−0.20311.33390.06870.100*
C160.0969 (4)0.9206 (5)0.43531 (19)0.0587 (8)
H16A0.12551.01800.45760.070*
H16B0.17270.85040.46370.070*
C17−0.0747 (3)0.8835 (4)0.45673 (18)0.0511 (8)
C18−0.1365 (5)0.9410 (6)0.5301 (2)0.0842 (14)
H18A−0.07481.00860.56390.101*
C19−0.2898 (5)0.8983 (8)0.5533 (3)0.107 (2)
H19A−0.33070.93810.60230.128*
C20−0.3806 (4)0.7987 (7)0.5048 (3)0.0886 (15)
H20A−0.48200.76840.52150.106*
C21−0.3232 (4)0.7438 (5)0.4322 (2)0.0690 (10)
H21A−0.38670.67780.39810.083*
C22−0.1714 (4)0.7852 (4)0.4087 (2)0.0551 (8)
H22A−0.13320.74560.35900.066*
U11U22U33U12U13U23
N10.0465 (12)0.0503 (14)0.0377 (12)0.0078 (11)0.0004 (9)0.0007 (11)
O10.0520 (11)0.0460 (12)0.0553 (12)−0.0058 (10)−0.0042 (8)−0.0094 (10)
O20.0529 (10)0.0469 (12)0.0407 (10)0.0098 (10)−0.0010 (8)−0.0082 (9)
O30.0525 (10)0.0281 (9)0.0493 (11)0.0011 (8)−0.0072 (8)−0.0006 (9)
O40.0463 (10)0.0301 (10)0.0609 (12)−0.0010 (8)−0.0033 (8)0.0031 (9)
O50.0541 (11)0.0351 (10)0.0551 (12)0.0073 (9)−0.0101 (9)0.0059 (9)
O60.0976 (18)0.0516 (15)0.0848 (19)−0.0140 (14)0.0235 (14)−0.0001 (15)
O70.0537 (11)0.0827 (18)0.0724 (15)0.0187 (13)−0.0030 (11)−0.0070 (14)
O80.0694 (13)0.0403 (12)0.0643 (14)0.0104 (10)−0.0114 (11)0.0051 (10)
O90.132 (2)0.0629 (19)0.0632 (16)−0.0026 (16)−0.0376 (15)0.0019 (14)
C10.0451 (14)0.0417 (16)0.0437 (15)−0.0028 (12)−0.0019 (11)−0.0016 (12)
C20.0458 (13)0.0380 (15)0.0333 (13)0.0064 (11)−0.0017 (10)−0.0032 (11)
C30.0440 (13)0.0284 (13)0.0389 (14)0.0011 (11)−0.0059 (10)−0.0008 (11)
C40.0478 (14)0.0299 (14)0.0382 (14)−0.0005 (11)−0.0048 (11)−0.0011 (11)
C50.0453 (14)0.0304 (14)0.0505 (16)0.0041 (12)−0.0097 (12)0.0031 (12)
C60.0478 (14)0.0480 (18)0.0493 (17)0.0100 (13)−0.0006 (12)−0.0023 (14)
C70.0462 (13)0.0450 (16)0.0362 (13)0.0053 (12)−0.0052 (10)0.0024 (13)
C80.0457 (15)0.0437 (18)0.082 (2)−0.0031 (13)0.0118 (15)−0.0152 (17)
C90.0606 (19)0.062 (2)0.119 (3)−0.0016 (18)−0.0048 (19)−0.040 (2)
C100.0489 (14)0.0401 (15)0.0604 (19)0.0019 (13)0.0086 (13)0.0001 (15)
C110.084 (2)0.070 (2)0.068 (2)0.012 (2)0.0200 (17)−0.020 (2)
C120.0549 (16)0.0341 (15)0.0523 (17)0.0037 (13)0.0014 (13)0.0062 (13)
C130.086 (2)0.042 (2)0.099 (3)−0.0069 (18)−0.015 (2)0.003 (2)
C140.0511 (15)0.054 (2)0.0439 (16)0.0042 (14)−0.0049 (12)0.0069 (15)
C150.0665 (18)0.068 (2)0.064 (2)0.0137 (17)−0.0023 (15)0.0268 (18)
C160.0624 (18)0.074 (2)0.0394 (16)0.0000 (17)0.0001 (13)−0.0014 (16)
C170.0490 (15)0.064 (2)0.0404 (15)0.0121 (15)0.0019 (12)0.0024 (15)
C180.074 (2)0.117 (4)0.061 (2)0.002 (2)0.0043 (18)−0.034 (2)
C190.072 (2)0.188 (6)0.064 (2)0.006 (3)0.0209 (19)−0.044 (3)
C200.0533 (17)0.147 (5)0.066 (2)0.004 (3)0.0058 (16)−0.003 (3)
C210.0557 (17)0.090 (3)0.060 (2)0.0025 (19)−0.0044 (14)0.001 (2)
C220.0602 (16)0.060 (2)0.0438 (16)0.0102 (16)−0.0012 (13)−0.0006 (14)
N1—C61.454 (4)C8—C91.487 (5)
N1—C161.468 (4)C9—H9A0.9600
N1—C71.472 (3)C9—H9B0.9600
O1—C81.368 (4)C9—H9C0.9600
O1—C11.424 (3)C10—C111.483 (5)
O2—C101.353 (3)C11—H11A0.9600
O2—C21.436 (3)C11—H11B0.9600
O3—C121.341 (3)C11—H11C0.9600
O3—C31.440 (3)C12—C131.487 (5)
O4—C11.415 (3)C13—H13A0.9600
O4—C41.429 (3)C13—H13B0.9600
O5—C141.352 (4)C13—H13C0.9600
O5—C51.447 (3)C14—C151.486 (5)
O6—C81.200 (4)C15—H15A0.9600
O7—C101.194 (4)C15—H15B0.9600
O8—C121.203 (3)C15—H15C0.9600
O9—C141.195 (4)C16—C171.506 (4)
C1—C21.532 (4)C16—H16A0.9700
C1—H1A0.9800C16—H16B0.9700
C2—C31.539 (4)C17—C221.374 (4)
C2—H2A0.9800C17—C181.389 (5)
C3—C71.520 (4)C18—C191.387 (6)
C3—C41.522 (4)C18—H18A0.9300
C4—C51.517 (4)C19—C201.360 (7)
C4—H4A0.9800C19—H19A0.9300
C5—C61.516 (4)C20—C211.355 (6)
C5—H5A0.9800C20—H20A0.9300
C6—H6A0.9700C21—C221.374 (5)
C6—H6B0.9700C21—H21A0.9300
C7—H7A0.9700C22—H22A0.9300
C7—H7B0.9700
C6—N1—C16112.3 (2)H9A—C9—H9B109.5
C6—N1—C7111.0 (2)C8—C9—H9C109.5
C16—N1—C7111.2 (2)H9A—C9—H9C109.5
C8—O1—C1115.3 (3)H9B—C9—H9C109.5
C10—O2—C2118.0 (2)O7—C10—O2123.1 (3)
C12—O3—C3120.49 (18)O7—C10—C11126.4 (3)
C1—O4—C4107.5 (2)O2—C10—C11110.4 (3)
C14—O5—C5116.8 (2)C10—C11—H11A109.5
O4—C1—O1108.1 (2)C10—C11—H11B109.5
O4—C1—C2108.4 (2)H11A—C11—H11B109.5
O1—C1—C2111.0 (2)C10—C11—H11C109.5
O4—C1—H1A109.8H11A—C11—H11C109.5
O1—C1—H1A109.8H11B—C11—H11C109.5
C2—C1—H1A109.8O8—C12—O3123.1 (3)
O2—C2—C1108.3 (2)O8—C12—C13126.4 (3)
O2—C2—C3108.6 (2)O3—C12—C13110.5 (3)
C1—C2—C3102.2 (2)C12—C13—H13A109.5
O2—C2—H2A112.4C12—C13—H13B109.5
C1—C2—H2A112.4H13A—C13—H13B109.5
C3—C2—H2A112.4C12—C13—H13C109.5
O3—C3—C7113.3 (2)H13A—C13—H13C109.5
O3—C3—C4104.26 (19)H13B—C13—H13C109.5
C7—C3—C4111.4 (2)O9—C14—O5122.5 (3)
O3—C3—C2116.0 (2)O9—C14—C15125.9 (3)
C7—C3—C2110.0 (2)O5—C14—C15111.5 (3)
C4—C3—C2101.2 (2)C14—C15—H15A109.5
O4—C4—C5112.0 (2)C14—C15—H15B109.5
O4—C4—C3103.7 (2)H15A—C15—H15B109.5
C5—C4—C3112.6 (2)C14—C15—H15C109.5
O4—C4—H4A109.4H15A—C15—H15C109.5
C5—C4—H4A109.4H15B—C15—H15C109.5
C3—C4—H4A109.4N1—C16—C17112.9 (2)
O5—C5—C6108.9 (2)N1—C16—H16A109.0
O5—C5—C4109.2 (2)C17—C16—H16A109.0
C6—C5—C4112.3 (2)N1—C16—H16B109.0
O5—C5—H5A108.8C17—C16—H16B109.0
C6—C5—H5A108.8H16A—C16—H16B107.8
C4—C5—H5A108.8C22—C17—C18117.5 (3)
N1—C6—C5107.9 (2)C22—C17—C16122.0 (3)
N1—C6—H6A110.1C18—C17—C16120.4 (3)
C5—C6—H6A110.1C19—C18—C17120.4 (4)
N1—C6—H6B110.1C19—C18—H18A119.8
C5—C6—H6B110.1C17—C18—H18A119.8
H6A—C6—H6B108.4C20—C19—C18120.3 (3)
N1—C7—C3110.8 (2)C20—C19—H19A119.8
N1—C7—H7A109.5C18—C19—H19A119.8
C3—C7—H7A109.5C21—C20—C19119.9 (4)
N1—C7—H7B109.5C21—C20—H20A120.0
C3—C7—H7B109.5C19—C20—H20A120.0
H7A—C7—H7B108.1C20—C21—C22120.2 (4)
O6—C8—O1122.1 (3)C20—C21—H21A119.9
O6—C8—C9126.7 (4)C22—C21—H21A119.9
O1—C8—C9111.2 (4)C17—C22—C21121.7 (3)
C8—C9—H9A109.5C17—C22—H22A119.2
C8—C9—H9B109.5C21—C22—H22A119.2
C4—O4—C1—O1−137.1 (2)O4—C4—C5—C6−67.2 (3)
C4—O4—C1—C2−16.8 (3)C3—C4—C5—C649.2 (3)
C8—O1—C1—O4−78.8 (3)C16—N1—C6—C5−170.1 (2)
C8—O1—C1—C2162.5 (2)C7—N1—C6—C564.6 (3)
C10—O2—C2—C1113.2 (3)O5—C5—C6—N1−178.5 (2)
C10—O2—C2—C3−136.5 (2)C4—C5—C6—N1−57.5 (3)
O4—C1—C2—O2105.0 (2)C6—N1—C7—C3−63.0 (3)
O1—C1—C2—O2−136.5 (2)C16—N1—C7—C3171.1 (3)
O4—C1—C2—C3−9.6 (3)O3—C3—C7—N1−65.2 (3)
O1—C1—C2—C3109.0 (2)C4—C3—C7—N151.9 (3)
C12—O3—C3—C7−67.5 (3)C2—C3—C7—N1163.2 (2)
C12—O3—C3—C4171.3 (2)C1—O1—C8—O6−1.0 (4)
C12—O3—C3—C261.0 (3)C1—O1—C8—C9179.9 (2)
O2—C2—C3—O327.8 (3)C2—O2—C10—O70.3 (4)
C1—C2—C3—O3142.1 (2)C2—O2—C10—C11179.3 (3)
O2—C2—C3—C7157.9 (2)C3—O3—C12—O8−1.8 (4)
C1—C2—C3—C7−87.8 (3)C3—O3—C12—C13177.9 (3)
O2—C2—C3—C4−84.3 (2)C5—O5—C14—O97.6 (5)
C1—C2—C3—C430.0 (2)C5—O5—C14—C15−170.2 (2)
C1—O4—C4—C5158.4 (2)C6—N1—C16—C1776.4 (4)
C1—O4—C4—C336.7 (3)C7—N1—C16—C17−158.4 (3)
O3—C3—C4—O4−161.9 (2)N1—C16—C17—C2233.4 (5)
C7—C3—C4—O475.6 (3)N1—C16—C17—C18−151.1 (4)
C2—C3—C4—O4−41.2 (2)C22—C17—C18—C190.5 (6)
O3—C3—C4—C576.7 (3)C16—C17—C18—C19−175.2 (4)
C7—C3—C4—C5−45.7 (3)C17—C18—C19—C200.6 (8)
C2—C3—C4—C5−162.5 (2)C18—C19—C20—C21−1.8 (8)
C14—O5—C5—C6−149.2 (2)C19—C20—C21—C221.9 (7)
C14—O5—C5—C487.9 (3)C18—C17—C22—C21−0.5 (5)
O4—C4—C5—O553.6 (3)C16—C17—C22—C21175.2 (3)
C3—C4—C5—O5170.1 (2)C20—C21—C22—C17−0.7 (6)
D—H···AD—HH···AD···AD—H···A
C2—H2A···O70.982.312.693 (3)102
C5—H5A···O90.982.302.666 (4)101
C7—H7A···O80.972.503.067 (4)117
C15—H15C···O6i0.962.333.161 (5)144
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C15—H15C⋯O6i0.962.333.161 (5)144

Symmetry code: (i) .

  3 in total

Review 1.  Carbohydrate mimetics-based glycosyltransferase inhibitors.

Authors:  P Compain; O R Martin
Journal:  Bioorg Med Chem       Date:  2001-12       Impact factor: 3.641

Review 2.  Design, synthesis and biological evaluation of iminosugar-based glycosyltransferase inhibitors.

Authors:  Philippe Compain; Olivier R Martin
Journal:  Curr Top Med Chem       Date:  2003       Impact factor: 3.295

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  3 in total

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