Literature DB >> 21754876

Methyl 2-amino-3,4,5,6-tetra-fluoro-benzoate.

Wei Guo1, Xiao-Jian Liao, Guo-Qiang Li, Shi-Hai Xu.   

Abstract

In the title compound, C(8)H(5)F(4)NO(2), synthesized by esterification of 2,3,4,5-tetra-fluoro-anthranilic acid with methanol, an intra-molecular amine N-H⋯O(carbon-yl) hydrogen bond is present, while inter-molecular N-H⋯O hydrogen bonds produce chains in the crystal, which extend along the b-axis direction.

Entities:  

Year:  2011        PMID: 21754876      PMCID: PMC3120311          DOI: 10.1107/S1600536811015182

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to this compound and its synthesis, see: Cai et al. (1992 ▶); Liao et al. (2007 ▶); Xu et al. (2008 ▶); Li et al. (1999 ▶).

Experimental

Crystal data

C8H5F4NO2 M = 223.0 Monoclinic, a = 4.5246 (2) Å b = 9.6484 (4) Å c = 19.3133 (9) Å β = 91.324 (4)° V = 842.90 (6) Å3 Z = 4 Cu Kα radiation μ = 1.66 mm−1 T = 295 K 0.62 × 0.22 × 0.17 mm

Data collection

Oxford Diffraction Xcalibur Sapphire3 Gemini Ultra CCD diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.622, T max = 1.000 2513 measured reflections 1332 independent reflections 1185 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.140 S = 1.03 1332 reflections 145 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811015182/zs2108sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015182/zs2108Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811015182/zs2108Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H5F4NO2F(000) = 448
Mr = 223.0Dx = 1.758 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.5418 Å
a = 4.5246 (2) ÅCell parameters from 1857 reflections
b = 9.6484 (4) Åθ = 4.6–63.3°
c = 19.3133 (9) ŵ = 1.66 mm1
β = 91.324 (4)°T = 295 K
V = 842.90 (6) Å3Prism, colourless
Z = 40.62 × 0.22 × 0.17 mm
Oxford Diffraction Xcalibur Sapphire3 Gemini Ultra CCD diffractometer1332 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source1185 reflections with I > 2σ(I)
mirrorRint = 0.018
Detector resolution: 16.0288 pixels mm-1θmax = 63.4°, θmin = 4.6°
ω scansh = −5→4
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −10→10
Tmin = 0.622, Tmax = 1.000l = −22→21
2513 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.140H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0959P)2 + 0.1931P] where P = (Fo2 + 2Fc2)/3
1332 reflections(Δ/σ)max = 0.001
145 parametersΔρmax = 0.17 e Å3
4 restraintsΔρmin = −0.20 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F1−0.0308 (3)0.34475 (14)0.54384 (7)0.0577 (5)
F20.3821 (3)−0.06985 (13)0.70892 (7)0.0608 (5)
F4−0.2509 (3)0.09206 (15)0.52989 (7)0.0614 (5)
F7−0.0460 (3)−0.11671 (14)0.61192 (8)0.0691 (6)
O30.6161 (4)0.44489 (16)0.68851 (8)0.0594 (6)
O50.3628 (4)0.50208 (16)0.59299 (9)0.0614 (6)
N120.6013 (4)0.1837 (2)0.73274 (10)0.0507 (7)
C60.3985 (4)0.1679 (2)0.68073 (10)0.0394 (6)
C80.3010 (4)0.2775 (2)0.63623 (9)0.0380 (6)
C90.0669 (5)0.0104 (2)0.61966 (11)0.0474 (7)
C100.4398 (4)0.4146 (2)0.64304 (10)0.0408 (6)
C110.0806 (4)0.2464 (2)0.58597 (9)0.0404 (6)
C130.2801 (5)0.0359 (2)0.66907 (10)0.0434 (6)
C14−0.0354 (5)0.1169 (2)0.57774 (11)0.0458 (6)
C150.5115 (7)0.6350 (3)0.59424 (16)0.0759 (10)
H12A0.661 (7)0.115 (3)0.7566 (16)0.075 (9)*
H12B0.678 (6)0.267 (3)0.7397 (14)0.070 (8)*
H15A0.447000.688800.554900.1140*
H15B0.721200.620900.592600.1140*
H15C0.464700.683400.636000.1140*
U11U22U33U12U13U23
F10.0617 (8)0.0530 (8)0.0572 (8)−0.0006 (6)−0.0233 (6)0.0059 (6)
F20.0727 (9)0.0404 (7)0.0690 (9)0.0027 (6)−0.0032 (7)0.0116 (6)
F40.0540 (8)0.0700 (9)0.0594 (8)−0.0116 (6)−0.0146 (6)−0.0162 (6)
F70.0748 (10)0.0441 (8)0.0882 (11)−0.0209 (6)−0.0010 (8)−0.0080 (7)
O30.0744 (11)0.0454 (9)0.0571 (10)−0.0116 (7)−0.0273 (8)0.0005 (7)
O50.0716 (11)0.0408 (9)0.0704 (10)−0.0096 (7)−0.0279 (8)0.0127 (7)
N120.0606 (12)0.0402 (11)0.0505 (11)0.0041 (9)−0.0178 (9)0.0033 (8)
C60.0413 (10)0.0378 (10)0.0392 (10)0.0040 (8)0.0008 (8)−0.0016 (8)
C80.0397 (10)0.0356 (10)0.0385 (10)0.0021 (8)−0.0039 (8)−0.0026 (8)
C90.0493 (12)0.0379 (11)0.0553 (12)−0.0065 (9)0.0079 (10)−0.0071 (9)
C100.0433 (11)0.0354 (10)0.0433 (11)0.0041 (8)−0.0049 (8)−0.0013 (8)
C110.0414 (10)0.0402 (11)0.0395 (10)0.0040 (8)−0.0039 (8)−0.0015 (8)
C130.0487 (11)0.0341 (10)0.0476 (11)0.0025 (8)0.0036 (9)0.0022 (8)
C140.0409 (10)0.0520 (12)0.0442 (11)−0.0050 (9)−0.0038 (8)−0.0104 (9)
C150.095 (2)0.0390 (13)0.092 (2)−0.0168 (13)−0.0328 (16)0.0158 (12)
F1—C111.341 (2)C6—C131.398 (3)
F2—C131.353 (2)C6—C81.426 (3)
F4—C141.349 (3)C8—C111.408 (3)
F7—C91.336 (2)C8—C101.469 (3)
O3—C101.209 (3)C9—C131.364 (3)
O5—C101.324 (3)C9—C141.381 (3)
O5—C151.448 (3)C11—C141.363 (3)
N12—C61.353 (3)C15—H15A0.9600
N12—H12A0.85 (3)C15—H15B0.9600
N12—H12B0.88 (3)C15—H15C0.9600
C10—O5—C15115.98 (19)F1—C11—C8121.20 (17)
C6—N12—H12B118.2 (18)F1—C11—C14116.08 (17)
H12A—N12—H12B121 (3)C8—C11—C14122.72 (18)
C6—N12—H12A121 (2)C6—C13—C9122.65 (18)
C8—C6—C13117.80 (17)F2—C13—C6118.11 (18)
N12—C6—C8123.97 (18)F2—C13—C9119.25 (17)
N12—C6—C13118.22 (18)F4—C14—C9119.76 (18)
C6—C8—C10119.22 (16)F4—C14—C11120.86 (18)
C6—C8—C11117.50 (17)C9—C14—C11119.4 (2)
C10—C8—C11123.25 (17)O5—C15—H15A109.00
C13—C9—C14119.87 (19)O5—C15—H15B109.00
F7—C9—C13120.44 (18)O5—C15—H15C109.00
F7—C9—C14119.69 (19)H15A—C15—H15B109.00
O3—C10—C8123.81 (18)H15A—C15—H15C109.00
O3—C10—O5122.31 (18)H15B—C15—H15C110.00
O5—C10—C8113.83 (16)
C15—O5—C10—O32.4 (3)C6—C8—C11—C14−1.4 (3)
C15—O5—C10—C8−175.26 (19)C10—C8—C11—F1−4.7 (3)
N12—C6—C8—C104.4 (3)C10—C8—C11—C14176.41 (19)
N12—C6—C8—C11−177.73 (18)F7—C9—C13—F21.8 (3)
C13—C6—C8—C10−174.65 (17)F7—C9—C13—C6−177.89 (19)
C13—C6—C8—C113.3 (3)C14—C9—C13—F2−178.81 (19)
N12—C6—C13—F2−2.2 (3)C14—C9—C13—C61.5 (3)
N12—C6—C13—C9177.5 (2)F7—C9—C14—F40.8 (3)
C8—C6—C13—F2176.87 (17)F7—C9—C14—C11179.94 (19)
C8—C6—C13—C9−3.4 (3)C13—C9—C14—F4−178.57 (19)
C6—C8—C10—O3−6.8 (3)C13—C9—C14—C110.6 (3)
C6—C8—C10—O5170.78 (17)F1—C11—C14—F4−0.4 (3)
C11—C8—C10—O3175.38 (19)F1—C11—C14—C9−179.53 (18)
C11—C8—C10—O5−7.0 (3)C8—C11—C14—F4178.59 (18)
C6—C8—C11—F1177.52 (16)C8—C11—C14—C9−0.6 (3)
D—H···AD—HH···AD···AD—H···A
N12—H12A···O3i0.85 (3)2.19 (3)3.028 (2)171 (3)
N12—H12B···O30.88 (3)2.00 (3)2.662 (2)131 (2)
N12—H12A···F20.85 (3)2.36 (3)2.676 (2)103 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N12—H12A⋯O3i0.85 (3)2.19 (3)3.028 (2)171 (3)
N12—H12B⋯O30.88 (3)2.00 (3)2.662 (2)131 (2)

Symmetry code: (i) .

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