Literature DB >> 21754875

A third monoclinic polymorph of 3,4,5-trihy-droxy-benzoic acid monohydrate.

Güneş Demirtaş1, Necmi Dege, Orhan Büyükgüngör.   

Abstract

The title compound, C(7)H(6)O(5)·H(2)O, is a new polymorph of the structures reported by Jiang et al. (2000 ▶) [Acta Cryst. C56, 594-595] and Okabe et al. (2001 ▶) [Acta Cryst. E57, o764-o766]. The gallic acid mol-ecule is essentially planar (r.m.s. deviation = 0.550 Å). An intra-molecular O-H⋯O hydrogen bond occurs in the gallic acid mol-ecule, which is linked to the water mol-ecule by a further O-H⋯O hydrogen bond. In the crystal, the components are linked by O-H⋯O hydrogen bonds. The hydrogen-bonding pattern differs from those reported for the previous polymorphs.

Entities:  

Year:  2011        PMID: 21754875      PMCID: PMC3120380          DOI: 10.1107/S1600536811018848

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of gallic acid, see: Lu et al. (2006 ▶); Madlener et al. (2007 ▶). For the previously reproted polymorphs, see: Jiang et al. (2000 ▶); Okabe et al. (2001 ▶). For a related structure, see: Genç et al. (2004 ▶).

Experimental

Crystal data

C7H6O5·H2O M = 188.13 Monoclinic, a = 9.7943 (7) Å b = 3.6122 (2) Å c = 21.5905 (15) Å β = 91.268 (6)° V = 763.66 (9) Å3 Z = 4 Mo Kα radiation μ = 0.15 mm−1 T = 296 K 0.61 × 0.28 × 0.09 mm

Data collection

Stoe IPDS 2 diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.948, T max = 0.986 4558 measured reflections 1502 independent reflections 1262 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.104 S = 1.04 1502 reflections 127 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.23 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: WinGX (Farrugia, 1997 ▶) and SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811018848/bx2352sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811018848/bx2352Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811018848/bx2352Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H6O5·H2OF(000) = 392
Mr = 188.13Dx = 1.636 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6472 reflections
a = 9.7943 (7) Åθ = 1.9–27.6°
b = 3.6122 (2) ŵ = 0.15 mm1
c = 21.5905 (15) ÅT = 296 K
β = 91.268 (6)°Needle, pale brown
V = 763.66 (9) Å30.61 × 0.28 × 0.09 mm
Z = 4
Stoe IPDS 2 diffractometer1502 independent reflections
Radiation source: fine-focus sealed tube1262 reflections with I > 2σ(I)
graphiteRint = 0.042
w–scan rotationθmax = 26.0°, θmin = 1.9°
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)h = −9→12
Tmin = 0.948, Tmax = 0.986k = −4→4
4558 measured reflectionsl = −26→26
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.104w = 1/[σ2(Fo2) + (0.0466P)2 + 0.2493P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
1502 reflectionsΔρmax = 0.15 e Å3
127 parametersΔρmin = −0.23 e Å3
3 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.023 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.67337 (16)0.6332 (5)0.58435 (8)0.0369 (4)
H10.63830.70580.54590.044*
C20.81149 (16)0.5670 (5)0.59282 (8)0.0349 (4)
C30.86369 (15)0.4587 (5)0.65029 (8)0.0356 (4)
C40.77763 (17)0.4238 (5)0.70009 (8)0.0395 (4)
C50.63957 (17)0.4863 (5)0.69214 (8)0.0414 (4)
H50.58140.45960.72530.050*
C60.58767 (16)0.5895 (5)0.63421 (8)0.0370 (4)
C70.43925 (16)0.6603 (5)0.62739 (8)0.0408 (4)
O10.90229 (12)0.5986 (4)0.54561 (6)0.0480 (4)
H20.86130.65990.51370.072*
O21.00108 (11)0.3881 (4)0.65588 (6)0.0469 (4)
H31.02000.32650.69160.070*
O30.83973 (12)0.3290 (5)0.75521 (6)0.0546 (4)
H40.78230.31690.78220.082*
O40.35878 (13)0.5981 (5)0.66792 (6)0.0583 (4)
O50.40210 (12)0.7959 (5)0.57298 (6)0.0567 (4)
H60.31930.82920.57190.085*
O60.14365 (13)1.0125 (5)0.56257 (7)0.0499 (4)
H6A0.120 (3)1.147 (8)0.5916 (12)0.102 (11)*
H6B0.077 (4)0.879 (14)0.555 (2)0.24 (3)*
U11U22U33U12U13U23
C10.0338 (8)0.0434 (9)0.0333 (9)0.0031 (7)−0.0022 (7)0.0016 (7)
C20.0310 (8)0.0418 (9)0.0321 (9)0.0009 (7)0.0036 (6)0.0008 (7)
C30.0264 (7)0.0457 (9)0.0346 (9)0.0013 (7)−0.0009 (6)−0.0010 (7)
C40.0337 (8)0.0530 (11)0.0316 (9)0.0013 (7)−0.0021 (6)0.0037 (8)
C50.0322 (8)0.0572 (11)0.0349 (9)0.0039 (7)0.0042 (7)0.0038 (8)
C60.0299 (8)0.0444 (9)0.0367 (9)0.0041 (7)0.0002 (7)−0.0001 (7)
C70.0319 (8)0.0525 (10)0.0381 (10)0.0049 (7)0.0003 (7)−0.0008 (8)
O10.0361 (6)0.0738 (10)0.0342 (7)0.0052 (6)0.0051 (5)0.0085 (6)
O20.0286 (6)0.0775 (10)0.0345 (7)0.0051 (6)−0.0026 (5)0.0035 (6)
O30.0334 (6)0.0984 (12)0.0321 (7)0.0070 (7)−0.0005 (5)0.0138 (7)
O40.0335 (6)0.0953 (12)0.0465 (8)0.0101 (7)0.0074 (6)0.0062 (8)
O50.0330 (6)0.0882 (11)0.0488 (8)0.0137 (7)−0.0020 (5)0.0158 (7)
O60.0358 (7)0.0697 (9)0.0440 (8)0.0126 (6)−0.0016 (5)0.0016 (7)
C1—C21.382 (2)C5—H50.9300
C1—C61.388 (2)C6—C71.480 (2)
C1—H10.9300C7—O41.212 (2)
C2—O11.372 (2)C7—O51.317 (2)
C2—C31.388 (2)O1—H20.8200
C3—O21.3723 (19)O2—H30.8200
C3—C41.387 (2)O3—H40.8200
C4—O31.368 (2)O5—H60.8200
C4—C51.378 (2)O6—H6A0.830 (18)
C5—C61.391 (2)O6—H6B0.824 (19)
C2—C1—C6118.99 (15)C4—C5—H5120.2
C2—C1—H1120.5C6—C5—H5120.2
C6—C1—H1120.5C1—C6—C5120.83 (15)
O1—C2—C1122.41 (14)C1—C6—C7120.83 (15)
O1—C2—C3117.10 (14)C5—C6—C7118.32 (15)
C1—C2—C3120.48 (15)O4—C7—O5122.82 (15)
O2—C3—C4121.78 (14)O4—C7—C6123.32 (16)
O2—C3—C2118.17 (14)O5—C7—C6113.86 (15)
C4—C3—C2120.05 (14)C2—O1—H2109.5
O3—C4—C5124.44 (16)C3—O2—H3109.5
O3—C4—C3115.54 (14)C4—O3—H4109.5
C5—C4—C3120.01 (15)C7—O5—H6109.5
C4—C5—C6119.61 (16)H6A—O6—H6B105 (3)
C6—C1—C2—O1178.97 (16)O3—C4—C5—C6178.56 (18)
C6—C1—C2—C30.0 (3)C3—C4—C5—C6−0.9 (3)
O1—C2—C3—O2−0.5 (2)C2—C1—C6—C51.0 (3)
C1—C2—C3—O2178.51 (16)C2—C1—C6—C7179.51 (16)
O1—C2—C3—C4179.56 (16)C4—C5—C6—C1−0.5 (3)
C1—C2—C3—C4−1.4 (3)C4—C5—C6—C7−179.08 (17)
O2—C3—C4—O32.4 (3)C1—C6—C7—O4173.92 (19)
C2—C3—C4—O3−177.66 (17)C5—C6—C7—O4−7.5 (3)
O2—C3—C4—C5−178.04 (17)C1—C6—C7—O5−5.8 (3)
C2—C3—C4—C51.9 (3)C5—C6—C7—O5172.79 (18)
D—H···AD—HH···AD···AD—H···A
O2—H3···O30.822.262.7006 (18)114
O5—H6···O60.821.852.6542 (17)167
O1—H2···O6i0.822.032.7539 (19)147
O2—H3···O3ii0.822.523.1721 (19)137
O3—H4···O4iii0.821.942.7154 (19)158
O6—H6A···O2iv0.83 (2)2.03 (2)2.8237 (19)161 (3)
O6—H6B···O1v0.82 (2)2.00 (2)2.814 (2)171 (5)
12
Unit-cell parametersa = 5.794 (4)a = 14.15 (1)
b = 4.719 (5)b = 3.622 (9)
c = 28.688 (5)c = 15.028 (10)
β = 95.08 (3)β = 97.52 (7)
V = 781.4 (3)V = 764 (1)
Space groupMonoclinic, P21/cMonoclinic, P2/n
ReferenceJiang et al. (2000)Okabe et al. (2001)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H3⋯O30.822.262.7006 (18)114
O5—H6⋯O60.821.852.6542 (17)167
O1—H2⋯O6i0.822.032.7539 (19)147
O2—H3⋯O3ii0.822.523.1721 (19)137
O3—H4⋯O4iii0.821.942.7154 (19)158
O6—H6A⋯O2iv0.83 (2)2.03 (2)2.8237 (19)161 (3)
O6—H6B⋯O1v0.82 (2)2.00 (2)2.814 (2)171 (5)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

Table 2

Other crystal structures of gallic acid monohydrate (Å, °)

 12
Unit-cell parametersa = 5.794 (4)a = 14.15 (1)
 b = 4.719 (5)b = 3.622 (9)
 c = 28.688 (5)c = 15.028 (10)
 β = 95.08 (3)β = 97.52 (7)
 V = 781.4 (3)V = 764 (1)
Space groupMonoclinic, P21/cMonoclinic, P2/n
ReferenceJiang et al. (2000)Okabe et al. (2001)
  5 in total

1.  Gallic acid monohydrate.

Authors:  R W Jiang; D S Ming; P P But; T C Mak
Journal:  Acta Crystallogr C       Date:  2000-05-15       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structure-activity relationship analysis of antioxidant ability and neuroprotective effect of gallic acid derivatives.

Authors:  Zhongbing Lu; Guangjun Nie; Peter S Belton; Huiru Tang; Baolu Zhao
Journal:  Neurochem Int       Date:  2005-12-15       Impact factor: 3.921

4.  Gallic acid inhibits ribonucleotide reductase and cyclooxygenases in human HL-60 promyelocytic leukemia cells.

Authors:  Sibylle Madlener; Christoph Illmer; Zsuzsanna Horvath; Philipp Saiko; Annemarie Losert; Irene Herbacek; Michael Grusch; Howard L Elford; Georg Krupitza; Astrid Bernhaus; Monika Fritzer-Szekeres; Thomas Szekeres
Journal:  Cancer Lett       Date:  2006-02-20       Impact factor: 8.679

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  4 in total

1.  Towards crystal structure prediction of complex organic compounds--a report on the fifth blind test.

Authors:  David A Bardwell; Claire S Adjiman; Yelena A Arnautova; Ekaterina Bartashevich; Stephan X M Boerrigter; Doris E Braun; Aurora J Cruz-Cabeza; Graeme M Day; Raffaele G Della Valle; Gautam R Desiraju; Bouke P van Eijck; Julio C Facelli; Marta B Ferraro; Damian Grillo; Matthew Habgood; Detlef W M Hofmann; Fridolin Hofmann; K V Jovan Jose; Panagiotis G Karamertzanis; Andrei V Kazantsev; John Kendrick; Liudmila N Kuleshova; Frank J J Leusen; Andrey V Maleev; Alston J Misquitta; Sharmarke Mohamed; Richard J Needs; Marcus A Neumann; Denis Nikylov; Anita M Orendt; Rumpa Pal; Constantinos C Pantelides; Chris J Pickard; Louise S Price; Sarah L Price; Harold A Scheraga; Jacco van de Streek; Tejender S Thakur; Siddharth Tiwari; Elisabetta Venuti; Ilia K Zhitkov
Journal:  Acta Crystallogr B       Date:  2011-11-17

2.  An ortho-rhom-bic polymorph of pyrazino-[2,3-f][1,10]phenanthroline-2,3-dicarbonitrile.

Authors:  Wei Yang; Qi-Ming Qiu; Li-Li Zhou; Qiong-Hua Jin; Cun-Lin Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-09

3.  π-Hole bonding in a new co-crystal hydrate of gallic acid and pyrazine: static and dynamic charge density analysis.

Authors:  Rumpa Pal; Christian Jelsch; Koichi Momma; Simon Grabowsky
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2022-03-23

4.  Complex Polymorphic System of Gallic Acid-Five Monohydrates, Three Anhydrates, and over 20 Solvates.

Authors:  Doris E Braun; Rajni M Bhardwaj; Alastair J Florence; Derek A Tocher; Sarah L Price
Journal:  Cryst Growth Des       Date:  2012-11-27       Impact factor: 4.076

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.