Literature DB >> 21754849

6-Chloro-3-nitro-N-(propan-2-yl)pyridin-2-amine.

Xiao-Yu Qing, Yun-Chuang Huang, Ling-Ling Yang, Yong-Mei Xie.   

Abstract

There are two mol-ecules in the asymmetric unit mol-ecule of the title compound, C(8)H(10)ClN(3)O(2). Intra-molecular N-H⋯O hydrogen bonds stabilize the mol-ecular structure. There are no classical inter-molecular hydrogen bonds in the crystal structure.

Entities:  

Year:  2011        PMID: 21754849      PMCID: PMC3120349          DOI: 10.1107/S1600536811018083

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of 6-chloro-N-isopropyl-3-nitro­pyridin-2-amine derivatives, see: Lan et al. (2010 ▶); Bavetsias et al. (2010 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C8H10ClN3O2 M = 215.64 Triclinic, a = 7.4283 (8) Å b = 8.9573 (10) Å c = 15.4301 (17) Å α = 89.672 (9)° β = 86.252 (9)° γ = 78.860 (9)° V = 1005.16 (19) Å3 Z = 4 Mo Kα radiation μ = 0.36 mm−1 T = 295 K 0.28 × 0.23 × 0.18 mm

Data collection

Oxford Diffraction Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2006 ▶) T min = 0.971, T max = 1.0 8239 measured reflections 4073 independent reflections 2773 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.149 S = 1.07 4073 reflections 257 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811018083/rk2268sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811018083/rk2268Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H10ClN3O2Z = 4
Mr = 215.64F(000) = 448
Triclinic, P1Dx = 1.425 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.7107 Å
a = 7.4283 (8) ÅCell parameters from 2782 reflections
b = 8.9573 (10) Åθ = 3.0–29.2°
c = 15.4301 (17) ŵ = 0.36 mm1
α = 89.672 (9)°T = 295 K
β = 86.252 (9)°Block, colourless
γ = 78.860 (9)°0.28 × 0.23 × 0.18 mm
V = 1005.16 (19) Å3
Oxford Diffraction Xcalibur Eos diffractometer4073 independent reflections
Radiation source: fine-focus sealed tube2773 reflections with I > 2σ(I)
graphiteRint = 0.022
Detector resolution: 16.0874 pixels mm-1θmax = 26.4°, θmin = 3.0°
ω scansh = −9→8
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2006)k = −11→11
Tmin = 0.971, Tmax = 1.0l = −19→19
8239 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.061Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.149H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0511P)2 + 0.4285P] where P = (Fo2 + 2Fc2)/3
4073 reflections(Δ/σ)max < 0.001
257 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.27337 (14)−0.24866 (9)0.55983 (6)0.0755 (3)
Cl20.22248 (13)0.27284 (9)0.95299 (6)0.0649 (3)
O10.2452 (5)0.3317 (3)0.30153 (16)0.1036 (10)
O20.2403 (4)0.4488 (3)0.42175 (16)0.0911 (9)
O30.3152 (4)0.9485 (3)1.08072 (16)0.0773 (7)
O40.3156 (4)0.8329 (3)1.20304 (15)0.0806 (8)
N10.2670 (3)0.0404 (3)0.55475 (14)0.0438 (6)
N20.2640 (4)0.2945 (3)0.56967 (15)0.0510 (6)
H20.26460.38180.54640.061*
N30.2445 (4)0.3306 (4)0.38070 (18)0.0692 (8)
N40.2595 (3)0.5533 (2)0.95342 (14)0.0420 (5)
N50.2928 (4)0.8005 (3)0.93459 (15)0.0504 (6)
H50.30870.88490.95620.060*
N60.3082 (4)0.8333 (3)1.12380 (17)0.0573 (7)
C10.2645 (4)−0.0767 (3)0.5049 (2)0.0476 (7)
C20.2568 (4)−0.0768 (4)0.4162 (2)0.0576 (8)
H2A0.2560−0.16520.38500.069*
C30.2504 (4)0.0606 (4)0.3764 (2)0.0563 (8)
H30.24560.06760.31640.068*
C40.2512 (4)0.1893 (3)0.42550 (18)0.0487 (7)
C50.2595 (4)0.1783 (3)0.51714 (17)0.0421 (6)
C60.2678 (4)0.2846 (3)0.66435 (17)0.0452 (7)
H60.35560.19260.67830.054*
C70.0831 (4)0.2722 (4)0.7059 (2)0.0684 (9)
H7B−0.00620.35970.69120.103*
H7C0.08940.26730.76790.103*
H7A0.04790.18180.68530.103*
C80.3374 (6)0.4205 (4)0.6968 (2)0.0769 (11)
H8A0.45510.42370.66800.115*
H8C0.34930.41210.75830.115*
H8B0.25200.51200.68470.115*
C90.2499 (4)0.4388 (3)1.00420 (19)0.0439 (7)
C100.2613 (4)0.4363 (3)1.0939 (2)0.0503 (7)
H100.25560.34941.12640.060*
C110.2814 (4)0.5690 (4)1.13095 (19)0.0493 (7)
H110.28920.57461.19070.059*
C120.2901 (4)0.6956 (3)1.08053 (18)0.0428 (6)
C130.2804 (4)0.6865 (3)0.98920 (18)0.0405 (6)
C140.2811 (4)0.7920 (3)0.84014 (18)0.0481 (7)
H140.35040.69250.82010.058*
C150.0870 (5)0.8048 (6)0.8159 (2)0.0928 (14)
H15C0.01660.90220.83410.139*
H15B0.03440.72580.84390.139*
H15A0.08540.79460.75400.139*
C160.3737 (5)0.9121 (4)0.7985 (2)0.0737 (10)
H16A0.37450.90370.73650.111*
H16B0.49780.89820.81560.111*
H16C0.30781.01100.81690.111*
U11U22U33U12U13U23
Cl10.1077 (7)0.0471 (5)0.0766 (7)−0.0291 (5)0.0014 (5)−0.0021 (4)
Cl20.0873 (6)0.0453 (5)0.0662 (6)−0.0228 (4)−0.0058 (4)0.0016 (4)
O10.177 (3)0.092 (2)0.0360 (15)−0.0075 (19)−0.0197 (17)0.0146 (14)
O20.164 (3)0.0536 (15)0.0507 (16)−0.0076 (16)−0.0119 (16)0.0113 (13)
O30.128 (2)0.0505 (14)0.0553 (15)−0.0203 (14)−0.0114 (14)−0.0059 (12)
O40.118 (2)0.0906 (19)0.0381 (14)−0.0327 (15)−0.0006 (13)−0.0173 (13)
N10.0527 (14)0.0420 (13)0.0369 (13)−0.0108 (10)−0.0001 (11)−0.0027 (11)
N20.0850 (18)0.0355 (12)0.0317 (13)−0.0100 (12)−0.0043 (12)0.0031 (10)
N30.096 (2)0.0656 (19)0.0395 (17)0.0025 (16)−0.0126 (15)0.0071 (15)
N40.0463 (13)0.0424 (13)0.0370 (13)−0.0089 (10)−0.0009 (10)0.0026 (11)
N50.0793 (18)0.0376 (13)0.0359 (13)−0.0146 (12)−0.0054 (12)−0.0011 (11)
N60.0691 (18)0.0601 (17)0.0418 (16)−0.0106 (13)−0.0013 (13)−0.0112 (14)
C10.0488 (17)0.0441 (16)0.0514 (19)−0.0130 (13)−0.0023 (13)−0.0034 (14)
C20.061 (2)0.061 (2)0.051 (2)−0.0123 (15)−0.0064 (15)−0.0181 (17)
C30.059 (2)0.071 (2)0.0363 (17)−0.0060 (16)−0.0079 (14)−0.0083 (16)
C40.0536 (18)0.0546 (18)0.0356 (16)−0.0038 (14)−0.0066 (13)0.0015 (14)
C50.0476 (16)0.0429 (16)0.0344 (15)−0.0051 (12)−0.0022 (12)−0.0028 (12)
C60.0665 (19)0.0372 (15)0.0311 (15)−0.0067 (13)−0.0063 (13)−0.0017 (12)
C70.069 (2)0.083 (2)0.049 (2)−0.0039 (18)0.0027 (17)0.0019 (18)
C80.129 (3)0.054 (2)0.053 (2)−0.028 (2)−0.016 (2)−0.0034 (17)
C90.0434 (16)0.0430 (16)0.0451 (17)−0.0083 (12)−0.0017 (13)0.0028 (13)
C100.0507 (18)0.0546 (18)0.0471 (18)−0.0143 (14)−0.0029 (14)0.0154 (15)
C110.0485 (17)0.067 (2)0.0323 (16)−0.0125 (14)0.0005 (12)0.0043 (14)
C120.0435 (16)0.0474 (16)0.0367 (16)−0.0073 (12)−0.0008 (12)−0.0055 (13)
C130.0426 (15)0.0404 (15)0.0367 (15)−0.0037 (11)−0.0007 (12)0.0014 (12)
C140.0665 (19)0.0433 (16)0.0363 (16)−0.0139 (14)−0.0075 (14)0.0038 (13)
C150.072 (3)0.149 (4)0.059 (2)−0.024 (3)−0.011 (2)0.024 (3)
C160.110 (3)0.068 (2)0.051 (2)−0.036 (2)−0.005 (2)0.0099 (18)
Cl1—C11.746 (3)C6—H60.9800
Cl2—C91.740 (3)C6—C71.500 (4)
O1—N31.221 (3)C6—C81.511 (4)
O2—N31.231 (3)C7—H7B0.9600
O3—N61.232 (3)C7—H7C0.9600
O4—N61.228 (3)C7—H7A0.9600
N1—C11.308 (3)C8—H8A0.9600
N1—C51.355 (3)C8—H8C0.9600
N2—H20.8600C8—H8B0.9600
N2—C51.329 (3)C9—C101.392 (4)
N2—C61.465 (3)C10—H100.9300
N3—C41.432 (4)C10—C111.360 (4)
N4—C91.297 (3)C11—H110.9300
N4—C131.357 (3)C11—C121.381 (4)
N5—H50.8600C12—C131.420 (4)
N5—C131.333 (3)C14—H140.9800
N5—C141.469 (3)C14—C151.496 (4)
N6—C121.438 (4)C14—C161.504 (4)
C1—C21.374 (4)C15—H15C0.9600
C2—H2A0.9300C15—H15B0.9600
C2—C31.365 (4)C15—H15A0.9600
C3—H30.9300C16—H16A0.9600
C3—C41.384 (4)C16—H16B0.9600
C4—C51.421 (4)C16—H16C0.9600
O1—N3—O2120.7 (3)C6—C8—H8C109.5
O1—N3—C4119.2 (3)C6—C8—H8B109.5
O2—N3—C4120.1 (3)C7—C6—H6108.1
O3—N6—C12119.4 (2)C7—C6—C8112.7 (3)
O4—N6—O3121.6 (3)H7B—C7—H7C109.5
O4—N6—C12118.9 (3)H7B—C7—H7A109.5
N1—C1—Cl1114.6 (2)H7C—C7—H7A109.5
N1—C1—C2126.9 (3)C8—C6—H6108.1
N1—C5—C4118.8 (2)H8A—C8—H8C109.5
N2—C5—N1116.6 (2)H8A—C8—H8B109.5
N2—C5—C4124.6 (3)H8C—C8—H8B109.5
N2—C6—H6108.1C9—N4—C13118.6 (2)
N2—C6—C7111.4 (2)C9—C10—H10122.1
N2—C6—C8108.3 (2)C10—C9—Cl2118.0 (2)
N4—C9—Cl2115.5 (2)C10—C11—H11119.7
N4—C9—C10126.5 (3)C10—C11—C12120.5 (3)
N4—C13—C12118.9 (2)C11—C10—C9115.7 (3)
N5—C13—N4116.6 (2)C11—C10—H10122.1
N5—C13—C12124.4 (2)C11—C12—N6117.8 (3)
N5—C14—H14107.9C11—C12—C13119.7 (3)
N5—C14—C15111.9 (3)C12—C11—H11119.7
N5—C14—C16108.4 (2)C13—N5—H5117.7
C1—N1—C5118.3 (2)C13—N5—C14124.6 (2)
C1—C2—H2A122.0C13—C12—N6122.5 (3)
C2—C1—Cl1118.4 (2)C14—N5—H5117.7
C2—C3—H3120.0C14—C15—H15C109.5
C2—C3—C4120.0 (3)C14—C15—H15B109.5
C3—C2—C1116.0 (3)C14—C15—H15A109.5
C3—C2—H2A122.0C14—C16—H16A109.5
C3—C4—N3117.8 (3)C14—C16—H16B109.5
C3—C4—C5120.0 (3)C14—C16—H16C109.5
C4—C3—H3120.0C15—C14—H14107.9
C5—N2—H2117.6C15—C14—C16112.8 (3)
C5—N2—C6124.8 (2)H15C—C15—H15B109.5
C5—C4—N3122.2 (3)H15C—C15—H15A109.5
C6—N2—H2117.6H15B—C15—H15A109.5
C6—C7—H7B109.5C16—C14—H14107.9
C6—C7—H7C109.5H16A—C16—H16B109.5
C6—C7—H7A109.5H16A—C16—H16C109.5
C6—C8—H8A109.5H16B—C16—H16C109.5
D—H···AD—HH···AD···AD—H···A
N2—H2···O20.862.022.660 (3)130
N5—H5···O30.862.012.653 (3)130
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O20.862.022.660 (3)130
N5—H5⋯O30.862.012.653 (3)130
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  3D-QSAR and docking studies on pyrazolo[4,3-h]qinazoline-3-carboxamides as cyclin-dependent kinase 2 (CDK2) inhibitors.

Authors:  Ping Lan; Wan-Na Chen; Gao-Keng Xiao; Ping-Hua Sun; Wei-Min Chen
Journal:  Bioorg Med Chem Lett       Date:  2010-09-24       Impact factor: 2.823

3.  Imidazo[4,5-b]pyridine derivatives as inhibitors of Aurora kinases: lead optimization studies toward the identification of an orally bioavailable preclinical development candidate.

Authors:  Vassilios Bavetsias; Jonathan M Large; Chongbo Sun; Nathalie Bouloc; Magda Kosmopoulou; Mizio Matteucci; Nicola E Wilsher; Vanessa Martins; Jóhannes Reynisson; Butrus Atrash; Amir Faisal; Frederique Urban; Melanie Valenti; Alexis de Haven Brandon; Gary Box; Florence I Raynaud; Paul Workman; Suzanne A Eccles; Richard Bayliss; Julian Blagg; Spiros Linardopoulos; Edward McDonald
Journal:  J Med Chem       Date:  2010-07-22       Impact factor: 7.446

  3 in total

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