Literature DB >> 21754842

Fraxinellone.

Hong-Mei Gu1, Hao Xu, Zhao-Zhao Zhong, Hai-Liang Zhu, Qing-Shan Li.   

Abstract

In the title compound, C(14)H(16)O(3) [systematic name: (3R*,3aR*)-3-(3-furan-yl)-3a,7-dimethyl-3a,4,5,6-tetra-hydro-2-benzofuran-1(3H)-one], the pendant methyl and furan groups attached to the stereogenic centres lie to the same side of the fused ring system. The dihedral angle between the five-membered rings is 74.8 (2)°; the fused five-membered ring adopts a twisted conformation. In the crystal, mol-ecules are linked by weak C-H⋯O inter-actions, which generate [100] chains.

Entities:  

Year:  2011        PMID: 21754842      PMCID: PMC3120588          DOI: 10.1107/S1600536811018393

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to fraxinellone and its biological activity, see: Kim et al. (2009 ▶); Sun et al. (2009 ▶); Liu et al. (2009 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C14H16O3 M = 232.27 Orthorhombic, a = 5.940 (3) Å b = 12.661 (6) Å c = 15.921 (7) Å V = 1197.3 (9) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 298 K 0.20 × 0.20 × 0.18 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.982, T max = 0.984 10397 measured reflections 1733 independent reflections 1331 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.113 S = 1.07 1733 reflections 156 parameters H-atom parameters constrained Δρmax = 0.12 e Å−3 Δρmin = −0.17 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXL97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL (Sheldrick, 2008 ▶); molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811018393/hb5863sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811018393/hb5863Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811018393/hb5863Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H16O3F(000) = 496
Mr = 232.27Dx = 1.288 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 25 reflections
a = 5.940 (3) Åθ = 9–12°
b = 12.661 (6) ŵ = 0.09 mm1
c = 15.921 (7) ÅT = 298 K
V = 1197.3 (9) Å3Block, colorless
Z = 40.20 × 0.20 × 0.18 mm
Bruker SMART CCD diffractometer1733 independent reflections
Radiation source: fine-focus sealed tube1331 reflections with I > 2σ(I)
graphiteRint = 0.049
φ and ω scansθmax = 28.5°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −7→7
Tmin = 0.982, Tmax = 0.984k = −17→16
10397 measured reflectionsl = −19→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0425P)2 + 0.1558P] where P = (Fo2 + 2Fc2)/3
1733 reflections(Δ/σ)max < 0.001
156 parametersΔρmax = 0.12 e Å3
0 restraintsΔρmin = −0.17 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.5425 (3)−0.10394 (15)0.61505 (12)0.0558 (5)
O20.2594 (3)0.00000 (13)0.65310 (9)0.0423 (4)
O3−0.2584 (5)0.24662 (18)0.72681 (14)0.0806 (8)
C10.3749 (4)−0.05682 (18)0.59460 (15)0.0391 (5)
C20.2628 (4)−0.04409 (17)0.51292 (14)0.0377 (5)
C30.2806 (5)−0.10573 (18)0.44505 (15)0.0428 (6)
C40.1270 (5)−0.0894 (2)0.37091 (17)0.0571 (7)
H4A0.0334−0.15170.36490.069*
H4B0.2190−0.08400.32080.069*
C5−0.0254 (5)0.0067 (2)0.37495 (17)0.0583 (7)
H5A−0.1572−0.00580.34040.070*
H5B0.05390.06710.35200.070*
C6−0.1009 (4)0.0323 (2)0.46465 (16)0.0488 (6)
H6A−0.19160.09600.46450.059*
H6B−0.1925−0.02510.48620.059*
C70.1041 (4)0.04793 (17)0.52105 (13)0.0355 (5)
C80.0486 (4)0.03908 (17)0.61578 (14)0.0364 (5)
H8−0.0667−0.01560.62280.044*
C90.4404 (5)−0.1978 (2)0.4381 (2)0.0599 (8)
H9A0.5589−0.18060.39950.090*
H9B0.3603−0.25870.41810.090*
H9C0.5037−0.21270.49230.090*
C100.2300 (5)0.15067 (19)0.50129 (15)0.0466 (6)
H10A0.35770.15720.53790.070*
H10B0.13110.20970.50960.070*
H10C0.28020.14950.44400.070*
C11−0.0265 (4)0.13529 (19)0.66193 (14)0.0416 (6)
C12−0.2403 (6)0.1508 (2)0.68932 (16)0.0563 (7)
H12−0.35740.10260.68330.068*
C13−0.0487 (6)0.2921 (2)0.72441 (18)0.0579 (8)
H13−0.01160.35770.74670.069*
C140.0930 (6)0.2275 (2)0.68509 (17)0.0542 (7)
H140.24450.24060.67460.065*
U11U22U33U12U13U23
O10.0482 (11)0.0579 (10)0.0612 (11)0.0135 (10)−0.0039 (10)0.0022 (9)
O20.0457 (9)0.0438 (8)0.0372 (8)0.0068 (8)0.0002 (8)0.0015 (7)
O30.101 (2)0.0835 (16)0.0576 (12)0.0376 (17)0.0124 (14)−0.0099 (11)
C10.0405 (13)0.0328 (11)0.0441 (13)−0.0013 (11)0.0046 (11)0.0044 (10)
C20.0383 (13)0.0356 (11)0.0391 (12)−0.0052 (11)0.0047 (11)0.0025 (9)
C30.0415 (14)0.0389 (12)0.0480 (14)−0.0062 (11)0.0090 (12)−0.0047 (10)
C40.0623 (18)0.0652 (16)0.0438 (15)−0.0026 (16)0.0025 (14)−0.0105 (13)
C50.0666 (19)0.0645 (16)0.0438 (14)0.0014 (16)−0.0078 (14)−0.0009 (13)
C60.0476 (15)0.0539 (15)0.0449 (14)0.0050 (13)−0.0071 (12)−0.0008 (12)
C70.0375 (12)0.0348 (11)0.0342 (11)0.0006 (10)0.0034 (10)0.0013 (9)
C80.0351 (12)0.0373 (11)0.0369 (11)0.0000 (10)0.0024 (10)0.0023 (9)
C90.0583 (19)0.0508 (15)0.0708 (19)0.0022 (15)0.0055 (16)−0.0183 (14)
C100.0561 (16)0.0385 (11)0.0451 (13)−0.0066 (13)0.0066 (14)0.0048 (10)
C110.0467 (15)0.0454 (13)0.0326 (11)0.0058 (12)0.0009 (11)0.0024 (10)
C120.0607 (18)0.0642 (16)0.0439 (14)0.0099 (16)0.0075 (16)−0.0036 (13)
C130.082 (2)0.0455 (14)0.0465 (15)0.0112 (16)−0.0031 (16)−0.0107 (12)
C140.0634 (19)0.0508 (14)0.0485 (15)−0.0008 (15)−0.0041 (15)−0.0052 (12)
O1—C11.205 (3)C6—H6B0.9700
O2—C11.362 (3)C7—C101.533 (3)
O2—C81.471 (3)C7—C81.548 (3)
O3—C121.357 (3)C8—C111.491 (3)
O3—C131.373 (4)C8—H80.9800
C1—C21.470 (3)C9—H9A0.9600
C2—C31.337 (3)C9—H9B0.9600
C2—C71.504 (3)C9—H9C0.9600
C3—C41.506 (4)C10—H10A0.9600
C3—C91.507 (4)C10—H10B0.9600
C4—C51.518 (4)C10—H10C0.9600
C4—H4A0.9700C11—C121.357 (4)
C4—H4B0.9700C11—C141.415 (4)
C5—C61.531 (4)C12—H120.9300
C5—H5A0.9700C13—C141.331 (4)
C5—H5B0.9700C13—H130.9300
C6—C71.526 (3)C14—H140.9300
C6—H6A0.9700
C1—O2—C8109.29 (17)C6—C7—C8113.2 (2)
C12—O3—C13106.9 (3)C10—C7—C8111.41 (18)
O1—C1—O2119.5 (2)O2—C8—C11109.30 (19)
O1—C1—C2131.9 (2)O2—C8—C7103.70 (17)
O2—C1—C2108.6 (2)C11—C8—C7119.00 (18)
C3—C2—C1128.0 (2)O2—C8—H8108.1
C3—C2—C7124.8 (2)C11—C8—H8108.1
C1—C2—C7107.02 (18)C7—C8—H8108.1
C2—C3—C4120.4 (2)C3—C9—H9A109.5
C2—C3—C9124.1 (3)C3—C9—H9B109.5
C4—C3—C9115.5 (2)H9A—C9—H9B109.5
C3—C4—C5116.0 (2)C3—C9—H9C109.5
C3—C4—H4A108.3H9A—C9—H9C109.5
C5—C4—H4A108.3H9B—C9—H9C109.5
C3—C4—H4B108.3C7—C10—H10A109.5
C5—C4—H4B108.3C7—C10—H10B109.5
H4A—C4—H4B107.4H10A—C10—H10B109.5
C4—C5—C6112.6 (2)C7—C10—H10C109.5
C4—C5—H5A109.1H10A—C10—H10C109.5
C6—C5—H5A109.1H10B—C10—H10C109.5
C4—C5—H5B109.1C12—C11—C14105.5 (2)
C6—C5—H5B109.1C12—C11—C8123.8 (3)
H5A—C5—H5B107.8C14—C11—C8130.7 (2)
C7—C6—C5110.0 (2)C11—C12—O3110.2 (3)
C7—C6—H6A109.7C11—C12—H12124.9
C5—C6—H6A109.7O3—C12—H12124.9
C7—C6—H6B109.7C14—C13—O3109.2 (2)
C5—C6—H6B109.7C14—C13—H13125.4
H6A—C6—H6B108.2O3—C13—H13125.4
C2—C7—C6110.41 (19)C13—C14—C11108.2 (3)
C2—C7—C10109.49 (19)C13—C14—H14125.9
C6—C7—C10112.3 (2)C11—C14—H14125.9
C2—C7—C899.28 (17)
D—H···AD—HH···AD···AD—H···A
C8—H8···O1i0.982.583.510 (3)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8⋯O1i0.982.583.510 (3)158

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Selective triggering of apoptosis of concanavalin A-activated T cells by fraxinellone for the treatment of T-cell-dependent hepatitis in mice.

Authors:  Yang Sun; Yu Qin; Fang-Yuan Gong; Xue-Feng Wu; Zi-Chun Hua; Ting Chen; Qiang Xu
Journal:  Biochem Pharmacol       Date:  2009-03-14       Impact factor: 5.858

3.  Fraxinellone inhibits lipopolysaccharide-induced inducible nitric oxide synthase and cyclooxygenase-2 expression by negatively regulating nuclear factor-kappa B in RAW 264.7 macrophages cells.

Authors:  Jong-Hwan Kim; Young-Mi Park; Ji-Sun Shin; Seung Jae Park; Jung-Hye Choi; Hyun-Ju Jung; Hee-Juhn Park; Kyung-Tae Lee
Journal:  Biol Pharm Bull       Date:  2009-06       Impact factor: 2.233

  3 in total
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1.  Fraxinellone Has Anticancer Activity by Inducing Osteosarcoma Cell Apoptosis via Promoting Excessive Autophagy Flux.

Authors:  Bin He; Wenkan Zhang; Jiaming He
Journal:  Front Pharmacol       Date:  2021-04-19       Impact factor: 5.810

  1 in total

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