Literature DB >> 21754830

2-Amino-pyrimidin-1-ium 4-methyl-benzene-sulfonate.

Masoumeh Tabatabaee1, Najmeh Noozari.   

Abstract

In the crystal structure of the title compound, C(4)H(6)N(3) (+)·C(7)H(7)O(3)S(-), inter-molecular N-H⋯O hydrogen bonds link the cations and anions into chains along [100]. Additional stabilization is provided by weak C-H⋯O hydrogen bonds. An inter-molecular π-π stacking inter-action with a centroid-centroid distance of 3.6957 (7) Å is also observed. The H atoms of the methyl group were refined as disordered over two sets of sites with equal occupancies.

Entities:  

Year:  2011        PMID: 21754830      PMCID: PMC3120468          DOI: 10.1107/S1600536811018198

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Tabatabaee et al. (2010 ▶, 2011 ▶).

Experimental

Crystal data

C4H6N3 +·C7H7O3S M = 267.30 Monoclinic, a = 6.2567 (3) Å b = 13.3756 (6) Å c = 15.2512 (7) Å β = 101.335 (1)° V = 1251.43 (10) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 100 K 0.50 × 0.36 × 0.32 mm

Data collection

Bruker SMART APEXII diffractometer 12275 measured reflections 3617 independent reflections 3160 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.088 S = 1.04 3617 reflections 163 parameters H-atom parameters constrained Δρmax = 0.45 e Å−3 Δρmin = −0.38 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811018198/lh5246sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811018198/lh5246Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811018198/lh5246Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H6N3+·C7H7O3SF(000) = 560
Mr = 267.30Dx = 1.419 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5926 reflections
a = 6.2567 (3) Åθ = 2.7–34.6°
b = 13.3756 (6) ŵ = 0.26 mm1
c = 15.2512 (7) ÅT = 100 K
β = 101.335 (1)°Prism, colourless
V = 1251.43 (10) Å30.50 × 0.36 × 0.32 mm
Z = 4
Bruker SMART APEXII diffractometer3160 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.021
graphiteθmax = 30.0°, θmin = 2.0°
ω scansh = −8→8
12275 measured reflectionsk = −18→18
3617 independent reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: difference Fourier map
wR(F2) = 0.088H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0496P)2 + 0.3689P] where P = (Fo2 + 2Fc2)/3
3617 reflections(Δ/σ)max = 0.001
163 parametersΔρmax = 0.45 e Å3
0 restraintsΔρmin = −0.38 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.28924 (4)0.172328 (19)0.105904 (16)0.01392 (8)
O10.28421 (13)0.21695 (6)0.19437 (5)0.01877 (17)
O20.51293 (13)0.15402 (6)0.09590 (5)0.01855 (16)
O30.14528 (13)0.08711 (6)0.08830 (5)0.01966 (17)
C10.18525 (17)0.26582 (8)0.02687 (7)0.01501 (19)
C2−0.03778 (18)0.27159 (8)−0.00789 (7)0.0183 (2)
H2A−0.13490.22440.00960.022*
C3−0.1167 (2)0.34700 (9)−0.06827 (8)0.0220 (2)
H3A−0.26870.3509−0.09190.026*
C40.0232 (2)0.41735 (9)−0.09488 (8)0.0236 (2)
C50.2456 (2)0.41027 (9)−0.05918 (8)0.0254 (2)
H5A0.34290.4576−0.07640.031*
C60.3277 (2)0.33500 (9)0.00123 (8)0.0213 (2)
H6A0.47970.33090.02480.026*
C7−0.0643 (3)0.49831 (10)−0.16093 (9)0.0348 (3)
H7A−0.19920.4752−0.19970.052*0.50
H7B0.04380.5140−0.19750.052*0.50
H7C−0.09440.5584−0.12860.052*0.50
H7D0.03260.5565−0.15080.052*0.50
H7E−0.21030.5178−0.15300.052*0.50
H7F−0.07210.4734−0.22190.052*0.50
N10.61962 (15)0.31572 (7)0.29233 (6)0.01640 (18)
H1A0.51210.28040.26120.020*
N20.99877 (15)0.33985 (7)0.33945 (6)0.01665 (18)
N30.86604 (16)0.21369 (8)0.23970 (7)0.0210 (2)
H3B1.00080.19610.23820.025*
H3C0.75600.18080.20760.025*
C80.82865 (17)0.29000 (8)0.29050 (7)0.0154 (2)
C90.57354 (18)0.39454 (8)0.34102 (7)0.0177 (2)
H9A0.42640.41160.34150.021*
C100.73953 (18)0.44934 (8)0.38933 (7)0.0179 (2)
H10A0.71320.50640.42280.022*
C110.95194 (17)0.41679 (8)0.38686 (7)0.0170 (2)
H11A1.07010.45250.42170.020*
U11U22U33U12U13U23
S10.01196 (12)0.01471 (13)0.01493 (13)−0.00058 (8)0.00229 (9)−0.00101 (8)
O10.0151 (4)0.0257 (4)0.0156 (3)−0.0016 (3)0.0034 (3)−0.0040 (3)
O20.0135 (4)0.0209 (4)0.0214 (4)0.0022 (3)0.0038 (3)−0.0016 (3)
O30.0186 (4)0.0161 (4)0.0234 (4)−0.0036 (3)0.0017 (3)0.0011 (3)
C10.0159 (5)0.0137 (4)0.0158 (4)0.0009 (4)0.0039 (4)−0.0015 (4)
C20.0171 (5)0.0189 (5)0.0186 (5)0.0003 (4)0.0028 (4)−0.0008 (4)
C30.0225 (5)0.0222 (5)0.0200 (5)0.0044 (4)0.0006 (4)−0.0002 (4)
C40.0361 (7)0.0172 (5)0.0175 (5)0.0044 (5)0.0056 (4)0.0002 (4)
C50.0324 (6)0.0185 (5)0.0274 (6)−0.0025 (5)0.0107 (5)0.0029 (4)
C60.0191 (5)0.0203 (5)0.0252 (5)−0.0023 (4)0.0063 (4)0.0008 (4)
C70.0563 (9)0.0225 (6)0.0245 (6)0.0088 (6)0.0054 (6)0.0064 (5)
N10.0124 (4)0.0201 (4)0.0166 (4)−0.0024 (3)0.0026 (3)−0.0015 (3)
N20.0138 (4)0.0189 (4)0.0169 (4)−0.0014 (3)0.0021 (3)−0.0005 (3)
N30.0145 (4)0.0258 (5)0.0231 (5)−0.0018 (4)0.0043 (3)−0.0087 (4)
C80.0138 (5)0.0182 (5)0.0145 (4)−0.0008 (4)0.0035 (3)0.0012 (4)
C90.0163 (5)0.0193 (5)0.0180 (5)0.0028 (4)0.0048 (4)0.0016 (4)
C100.0191 (5)0.0164 (5)0.0186 (5)0.0010 (4)0.0044 (4)0.0000 (4)
C110.0165 (5)0.0169 (5)0.0168 (5)−0.0029 (4)0.0013 (4)0.0003 (4)
S1—O31.4449 (8)C7—H7C0.9800
S1—O21.4580 (8)C7—H7D0.9800
S1—O11.4814 (8)C7—H7E0.9800
S1—C11.7697 (11)C7—H7F0.9800
C1—C61.3930 (15)N1—C91.3529 (14)
C1—C21.3941 (15)N1—C81.3579 (14)
C2—C31.3895 (16)N1—H1A0.8800
C2—H2A0.9500N2—C111.3233 (14)
C3—C41.3985 (18)N2—C81.3500 (14)
C3—H3A0.9500N3—C81.3296 (14)
C4—C51.3946 (19)N3—H3B0.8800
C4—C71.5067 (17)N3—H3C0.8800
C5—C61.3929 (17)C9—C101.3631 (15)
C5—H5A0.9500C9—H9A0.9500
C6—H6A0.9500C10—C111.4060 (15)
C7—H7A0.9800C10—H10A0.9500
C7—H7B0.9800C11—H11A0.9500
O3—S1—O2115.10 (5)H7B—C7—H7D56.3
O3—S1—O1111.29 (5)H7C—C7—H7D56.3
O2—S1—O1110.83 (5)C4—C7—H7E109.5
O3—S1—C1107.38 (5)H7A—C7—H7E56.3
O2—S1—C1106.22 (5)H7B—C7—H7E141.1
O1—S1—C1105.36 (5)H7C—C7—H7E56.3
C6—C1—C2120.29 (10)H7D—C7—H7E109.5
C6—C1—S1119.39 (8)C4—C7—H7F109.5
C2—C1—S1120.31 (8)H7A—C7—H7F56.3
C3—C2—C1119.41 (11)H7B—C7—H7F56.3
C3—C2—H2A120.3H7C—C7—H7F141.1
C1—C2—H2A120.3H7D—C7—H7F109.5
C2—C3—C4121.30 (11)H7E—C7—H7F109.5
C2—C3—H3A119.4C9—N1—C8121.24 (9)
C4—C3—H3A119.4C9—N1—H1A119.4
C5—C4—C3118.33 (11)C8—N1—H1A119.4
C5—C4—C7120.89 (12)C11—N2—C8116.81 (10)
C3—C4—C7120.78 (12)C8—N3—H3B120.0
C6—C5—C4121.14 (11)C8—N3—H3C120.0
C6—C5—H5A119.4H3B—N3—H3C120.0
C4—C5—H5A119.4N3—C8—N2119.44 (10)
C5—C6—C1119.52 (11)N3—C8—N1119.13 (10)
C5—C6—H6A120.2N2—C8—N1121.43 (10)
C1—C6—H6A120.2N1—C9—C10119.59 (10)
C4—C7—H7A109.5N1—C9—H9A120.2
C4—C7—H7B109.5C10—C9—H9A120.2
H7A—C7—H7B109.5C9—C10—C11116.28 (10)
C4—C7—H7C109.5C9—C10—H10A121.9
H7A—C7—H7C109.5C11—C10—H10A121.9
H7B—C7—H7C109.5N2—C11—C10124.57 (10)
C4—C7—H7D109.5N2—C11—H11A117.7
H7A—C7—H7D141.1C10—C11—H11A117.7
O3—S1—C1—C6−152.15 (9)C7—C4—C5—C6−179.36 (12)
O2—S1—C1—C6−28.51 (10)C4—C5—C6—C1−0.34 (18)
O1—S1—C1—C689.14 (9)C2—C1—C6—C50.24 (17)
O3—S1—C1—C229.29 (10)S1—C1—C6—C5−178.32 (9)
O2—S1—C1—C2152.94 (9)C11—N2—C8—N3178.22 (10)
O1—S1—C1—C2−89.42 (9)C11—N2—C8—N1−2.14 (15)
C6—C1—C2—C3−0.06 (16)C9—N1—C8—N3−178.11 (10)
S1—C1—C2—C3178.49 (9)C9—N1—C8—N22.25 (16)
C1—C2—C3—C4−0.03 (17)C8—N1—C9—C10−0.06 (16)
C2—C3—C4—C5−0.07 (18)N1—C9—C10—C11−1.95 (15)
C2—C3—C4—C7179.54 (11)C8—N2—C11—C10−0.04 (16)
C3—C4—C5—C60.25 (18)C9—C10—C11—N22.07 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O10.881.792.674 (1)176
N3—H3B···O1i0.882.032.835 (1)151
N3—H3C···O20.882.082.902 (1)155
C10—H10A···O3ii0.952.463.1035 (14)124
C11—H11A···O3iii0.952.563.3629 (14)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O10.881.792.674 (1)176
N3—H3B⋯O1i0.882.032.835 (1)151
N3—H3C⋯O20.882.082.902 (1)155
C10—H10A⋯O3ii0.952.463.1035 (14)124
C11—H11A⋯O3iii0.952.563.3629 (14)143

Symmetry codes: (i) ; (ii) ; (iii) .

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