| Literature DB >> 21754821 |
Oluseye K Onajole, Thavendran Govender, Hendrik G Kruger, Glenn E M Maguire.
Abstract
In the title compound, C(12)H(18)ClNO, which was synthesized as part of a study into potential anti-tuberculosis agents, the adamantine skeleton displays shorter than normal C-C bond lengths ranging between 1.5293 (18) and 1.5366 (15) Å. The structure also displays inter-molecular N-H⋯O hydrogen bonding, which forms an infinite chain in the a-axis direction.Entities:
Year: 2011 PMID: 21754821 PMCID: PMC3120360 DOI: 10.1107/S1600536811018046
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H18ClNO | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2ab | Cell parameters from 5629 reflections |
| θ = 3.0–28.3° | |
| µ = 0.29 mm−1 | |
| Block, colourless | |
| 0.26 × 0.16 × 0.15 mm |
| Nonius KappaCCD diffractometer | 3003 independent reflections |
| Radiation source: fine-focus sealed tube | 2568 reflections with |
| graphite | |
| 1.2° φ scans and ω scans | θmax = 28.3°, θmin = 3.0° |
| Absorption correction: multi-scan ( | |
| 5629 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 3003 reflections | Δρmax = 0.26 e Å−3 |
| 137 parameters | Δρmin = −0.33 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0078 (14) |
| Experimental. X-ray single-crystal intensity data were collected on a Nonius Kappa-CCD
diffractometer using graphite monochromated MoKa radiation (l = 0.71073?Å).
Temperature was controlled by an Oxford Cryostream cooling system (Oxford
Cryostat). The strategy for the data collections was evaluated using the
Bruker Nonius "Collect" program (Nonius, 2000). Data were scaled and reduced
using DENZO-SMN software (Otwinowski & Minor, 1997). Absorption corrections
were performed using SADABS (Sheldrick, 2008). The structure was solved by
direct methods and refined employing full-matrix least-squares with the
program SHELXL97 (Sheldrick, 2008) refining on F2. All non-hydrogen atoms were
refined anisotropically. Half sphere of data collected using |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.14558 (4) | 0.52848 (3) | 0.15642 (2) | 0.04867 (14) | |
| O1 | 0.10158 (8) | 0.66702 (7) | 0.27321 (5) | 0.0342 (2) | |
| N1 | 0.33518 (9) | 0.70366 (7) | 0.29263 (5) | 0.0280 (2) | |
| H1 | 0.4228 | 0.6889 | 0.2797 | 0.034* | |
| C1 | 0.31869 (11) | 0.77662 (8) | 0.34943 (6) | 0.0246 (2) | |
| C2 | 0.23383 (13) | 0.86513 (9) | 0.32293 (6) | 0.0316 (3) | |
| H2A | 0.2809 | 0.8930 | 0.2804 | 0.038* | |
| H2B | 0.1361 | 0.8448 | 0.3094 | 0.038* | |
| C3 | 0.46993 (11) | 0.80966 (9) | 0.36968 (6) | 0.0304 (3) | |
| H3A | 0.5262 | 0.7531 | 0.3863 | 0.037* | |
| H3B | 0.5182 | 0.8374 | 0.3274 | 0.037* | |
| C4 | 0.24600 (12) | 0.73351 (8) | 0.41519 (6) | 0.0278 (2) | |
| H4A | 0.3012 | 0.6769 | 0.4325 | 0.033* | |
| H4B | 0.1488 | 0.7110 | 0.4026 | 0.033* | |
| C5 | 0.22636 (14) | 0.94200 (9) | 0.38192 (7) | 0.0360 (3) | |
| H5 | 0.1710 | 0.9995 | 0.3645 | 0.043* | |
| C6 | 0.37733 (15) | 0.97414 (9) | 0.40223 (8) | 0.0398 (3) | |
| H6A | 0.4255 | 1.0029 | 0.3603 | 0.048* | |
| H6B | 0.3726 | 1.0242 | 0.4400 | 0.048* | |
| C7 | 0.46230 (12) | 0.88638 (9) | 0.42878 (7) | 0.0333 (3) | |
| H7 | 0.5611 | 0.9074 | 0.4418 | 0.040* | |
| C8 | 0.38820 (13) | 0.84361 (10) | 0.49427 (6) | 0.0343 (3) | |
| H8A | 0.3833 | 0.8931 | 0.5324 | 0.041* | |
| H8B | 0.4434 | 0.7874 | 0.5123 | 0.041* | |
| C9 | 0.23705 (13) | 0.81098 (9) | 0.47388 (6) | 0.0316 (3) | |
| H9 | 0.1886 | 0.7827 | 0.5166 | 0.038* | |
| C10 | 0.15142 (13) | 0.89847 (10) | 0.44707 (7) | 0.0369 (3) | |
| H10A | 0.1442 | 0.9480 | 0.4851 | 0.044* | |
| H10B | 0.0536 | 0.8777 | 0.4341 | 0.044* | |
| C11 | 0.22906 (11) | 0.65799 (8) | 0.25909 (6) | 0.0275 (2) | |
| C12 | 0.28360 (14) | 0.59104 (11) | 0.20014 (7) | 0.0417 (3) | |
| H12A | 0.3506 | 0.5432 | 0.2210 | 0.050* | |
| H12B | 0.3370 | 0.6302 | 0.1649 | 0.050* |
| Cl1 | 0.0435 (2) | 0.0562 (2) | 0.0463 (2) | −0.00949 (15) | −0.01151 (14) | −0.01454 (15) |
| O1 | 0.0177 (4) | 0.0510 (5) | 0.0338 (4) | −0.0016 (3) | −0.0025 (3) | −0.0013 (4) |
| N1 | 0.0165 (4) | 0.0365 (5) | 0.0311 (5) | −0.0006 (3) | 0.0008 (3) | −0.0052 (4) |
| C1 | 0.0186 (4) | 0.0289 (5) | 0.0263 (5) | −0.0003 (4) | −0.0003 (4) | −0.0008 (4) |
| C2 | 0.0311 (6) | 0.0326 (6) | 0.0313 (6) | 0.0019 (5) | −0.0032 (5) | 0.0047 (5) |
| C3 | 0.0196 (5) | 0.0377 (6) | 0.0340 (6) | −0.0036 (4) | −0.0005 (4) | −0.0040 (5) |
| C4 | 0.0259 (5) | 0.0288 (5) | 0.0287 (5) | −0.0026 (4) | 0.0014 (4) | 0.0022 (4) |
| C5 | 0.0370 (6) | 0.0284 (5) | 0.0425 (7) | 0.0061 (5) | −0.0044 (5) | 0.0009 (5) |
| C6 | 0.0448 (7) | 0.0296 (6) | 0.0450 (8) | −0.0077 (5) | 0.0000 (6) | −0.0006 (5) |
| C7 | 0.0251 (5) | 0.0375 (6) | 0.0371 (6) | −0.0067 (5) | −0.0017 (4) | −0.0062 (5) |
| C8 | 0.0338 (6) | 0.0390 (6) | 0.0302 (6) | 0.0002 (5) | −0.0050 (5) | −0.0048 (5) |
| C9 | 0.0297 (5) | 0.0376 (6) | 0.0274 (5) | −0.0026 (5) | 0.0039 (4) | −0.0006 (5) |
| C10 | 0.0291 (6) | 0.0408 (7) | 0.0407 (7) | 0.0054 (5) | 0.0025 (5) | −0.0089 (5) |
| C11 | 0.0211 (5) | 0.0350 (5) | 0.0264 (5) | −0.0015 (4) | −0.0021 (4) | 0.0013 (4) |
| C12 | 0.0292 (6) | 0.0578 (8) | 0.0380 (6) | −0.0083 (6) | 0.0008 (5) | −0.0170 (6) |
| Cl1—C12 | 1.7567 (13) | C5—C10 | 1.5329 (19) |
| O1—C11 | 1.2293 (13) | C5—H5 | 1.0000 |
| N1—C11 | 1.3340 (14) | C6—C7 | 1.5293 (18) |
| N1—C1 | 1.4729 (14) | C6—H6A | 0.9900 |
| N1—H1 | 0.8800 | C6—H6B | 0.9900 |
| C1—C4 | 1.5304 (15) | C7—C8 | 1.5303 (17) |
| C1—C3 | 1.5354 (14) | C7—H7 | 1.0000 |
| C1—C2 | 1.5366 (15) | C8—C9 | 1.5336 (16) |
| C2—C5 | 1.5334 (17) | C8—H8A | 0.9900 |
| C2—H2A | 0.9900 | C8—H8B | 0.9900 |
| C2—H2B | 0.9900 | C9—C10 | 1.5312 (18) |
| C3—C7 | 1.5335 (16) | C9—H9 | 1.0000 |
| C3—H3A | 0.9900 | C10—H10A | 0.9900 |
| C3—H3B | 0.9900 | C10—H10B | 0.9900 |
| C4—C9 | 1.5357 (16) | C11—C12 | 1.5283 (17) |
| C4—H4A | 0.9900 | C12—H12A | 0.9900 |
| C4—H4B | 0.9900 | C12—H12B | 0.9900 |
| C5—C6 | 1.5298 (18) | ||
| C11—N1—C1 | 125.80 (9) | C7—C6—H6B | 109.8 |
| C11—N1—H1 | 117.1 | C5—C6—H6B | 109.8 |
| C1—N1—H1 | 117.1 | H6A—C6—H6B | 108.2 |
| N1—C1—C4 | 111.59 (9) | C6—C7—C8 | 109.25 (10) |
| N1—C1—C3 | 106.53 (9) | C6—C7—C3 | 109.32 (10) |
| C4—C1—C3 | 108.95 (9) | C8—C7—C3 | 109.82 (10) |
| N1—C1—C2 | 111.04 (9) | C6—C7—H7 | 109.5 |
| C4—C1—C2 | 109.78 (9) | C8—C7—H7 | 109.5 |
| C3—C1—C2 | 108.85 (9) | C3—C7—H7 | 109.5 |
| C5—C2—C1 | 109.59 (9) | C7—C8—C9 | 109.28 (10) |
| C5—C2—H2A | 109.8 | C7—C8—H8A | 109.8 |
| C1—C2—H2A | 109.8 | C9—C8—H8A | 109.8 |
| C5—C2—H2B | 109.8 | C7—C8—H8B | 109.8 |
| C1—C2—H2B | 109.8 | C9—C8—H8B | 109.8 |
| H2A—C2—H2B | 108.2 | H8A—C8—H8B | 108.3 |
| C7—C3—C1 | 109.89 (9) | C10—C9—C8 | 109.62 (10) |
| C7—C3—H3A | 109.7 | C10—C9—C4 | 109.71 (10) |
| C1—C3—H3A | 109.7 | C8—C9—C4 | 109.39 (9) |
| C7—C3—H3B | 109.7 | C10—C9—H9 | 109.4 |
| C1—C3—H3B | 109.7 | C8—C9—H9 | 109.4 |
| H3A—C3—H3B | 108.2 | C4—C9—H9 | 109.4 |
| C1—C4—C9 | 109.61 (9) | C9—C10—C5 | 109.26 (10) |
| C1—C4—H4A | 109.7 | C9—C10—H10A | 109.8 |
| C9—C4—H4A | 109.7 | C5—C10—H10A | 109.8 |
| C1—C4—H4B | 109.7 | C9—C10—H10B | 109.8 |
| C9—C4—H4B | 109.7 | C5—C10—H10B | 109.8 |
| H4A—C4—H4B | 108.2 | H10A—C10—H10B | 108.3 |
| C6—C5—C10 | 109.68 (11) | O1—C11—N1 | 125.04 (11) |
| C6—C5—C2 | 109.72 (10) | O1—C11—C12 | 122.81 (10) |
| C10—C5—C2 | 109.21 (10) | N1—C11—C12 | 112.15 (9) |
| C6—C5—H5 | 109.4 | C11—C12—Cl1 | 112.84 (9) |
| C10—C5—H5 | 109.4 | C11—C12—H12A | 109.0 |
| C2—C5—H5 | 109.4 | Cl1—C12—H12A | 109.0 |
| C7—C6—C5 | 109.53 (10) | C11—C12—H12B | 109.0 |
| C7—C6—H6A | 109.8 | Cl1—C12—H12B | 109.0 |
| C5—C6—H6A | 109.8 | H12A—C12—H12B | 107.8 |
| C11—N1—C1—C4 | 62.57 (14) | C5—C6—C7—C3 | 59.83 (13) |
| C11—N1—C1—C3 | −178.63 (11) | C1—C3—C7—C6 | −60.28 (13) |
| C11—N1—C1—C2 | −60.26 (14) | C1—C3—C7—C8 | 59.57 (13) |
| N1—C1—C2—C5 | −176.69 (9) | C6—C7—C8—C9 | 60.43 (13) |
| C4—C1—C2—C5 | 59.45 (12) | C3—C7—C8—C9 | −59.46 (13) |
| C3—C1—C2—C5 | −59.73 (12) | C7—C8—C9—C10 | −60.35 (13) |
| N1—C1—C3—C7 | 179.85 (9) | C7—C8—C9—C4 | 59.99 (13) |
| C4—C1—C3—C7 | −59.64 (12) | C1—C4—C9—C10 | 59.49 (12) |
| C2—C1—C3—C7 | 60.05 (12) | C1—C4—C9—C8 | −60.79 (12) |
| N1—C1—C4—C9 | 177.60 (9) | C8—C9—C10—C5 | 59.74 (13) |
| C3—C1—C4—C9 | 60.26 (11) | C4—C9—C10—C5 | −60.40 (13) |
| C2—C1—C4—C9 | −58.85 (12) | C6—C5—C10—C9 | −59.57 (13) |
| C1—C2—C5—C6 | 60.02 (13) | C2—C5—C10—C9 | 60.70 (13) |
| C1—C2—C5—C10 | −60.23 (13) | C1—N1—C11—O1 | −3.61 (19) |
| C10—C5—C6—C7 | 60.04 (14) | C1—N1—C11—C12 | 176.78 (10) |
| C2—C5—C6—C7 | −59.92 (14) | O1—C11—C12—Cl1 | −0.73 (17) |
| C5—C6—C7—C8 | −60.38 (13) | N1—C11—C12—Cl1 | 178.88 (9) |
| H··· | ||||
| N1—H1···O1i | 0.88 | 1.97 | 2.8301 (12) | 165 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O1i | 0.88 | 1.97 | 2.8301 (12) | 165 |
Symmetry code: (i) .