Literature DB >> 21754815

(2R,6S)-tert-Butyl 2-(benzhydryl-carbamo-yl)-6-methyl-morpholine-4-carboxyl-ate.

Haiyang Wang, Guangxin Xia, Xuejun Liu, Jingkang Shen.   

Abstract

The title compound, C(24)H(30)N(2)O(4), was obtained by the reaction of (2R,6S)-4-(tert-but-oxy-carbon-yl)-6-methyl-morpho-line-2-carb-oxy-lic acid with diphenyl-methanamine in dimethyl-formamide solution. The morpholine ring is in a chair conformation. In the crystal, weak inter-molecular C-H⋯O hydrogen bonds link mol-ecules into chains along the b axis.

Entities:  

Year:  2011        PMID: 21754815      PMCID: PMC3120296          DOI: 10.1107/S1600536811017764

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a review of the biological relevance and synthesis of C-substituted morpholine derivatives, see: Wijtmans et al. (2004 ▶). For applications of morpholine derivatives as drugs, see: Dando & Perry (2004 ▶); Hajos et al. (2004 ▶); Hale et al. (1998 ▶); Versiani et al. (2002 ▶). For agrochemical fungicides and bactericides containing a morpholine skeleton, see: Dieckmann et al. (1993 ▶). For applications of morpholines as chiral auxiliaries in asymmetric synthesis, see: Dave & Sasaki (2004 ▶); Enders et al. (1994 ▶).

Experimental

Crystal data

C24H30N2O4 M = 410.50 Monoclinic, a = 27.248 (4) Å b = 5.8241 (8) Å c = 14.275 (2) Å β = 94.192 (3)° V = 2259.3 (5) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.37 × 0.24 × 0.16 mm

Data collection

Bruker SMART APEX CCD diffractometer 5956 measured reflections 2310 independent reflections 1934 reflections with I > 2σ(I) R int = 0.110

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.109 S = 0.96 2310 reflections 279 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.23 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811017764/cv5082sup1.cif Supplementary material file. DOI: 10.1107/S1600536811017764/cv5082Isup2.cdx Structure factors: contains datablocks I. DOI: 10.1107/S1600536811017764/cv5082Isup3.hkl Supplementary material file. DOI: 10.1107/S1600536811017764/cv5082Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report Enhanced figure: interactive version of Fig. 1
C24H30N2O4F(000) = 880
Mr = 410.50Dx = 1.207 Mg m3
Monoclinic, C2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: C 2yCell parameters from 2344 reflections
a = 27.248 (4) Åθ = 5.7–47.9°
b = 5.8241 (8) ŵ = 0.08 mm1
c = 14.275 (2) ÅT = 293 K
β = 94.192 (3)°Prismatic, white
V = 2259.3 (5) Å30.37 × 0.24 × 0.16 mm
Z = 4
Bruker SMART APEX CCD diffractometer1934 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.110
graphiteθmax = 25.5°, θmin = 2.0°
φ and ω scansh = −32→27
5956 measured reflectionsk = −6→7
2310 independent reflectionsl = −17→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H atoms treated by a mixture of independent and constrained refinement
S = 0.96w = 1/[σ2(Fo2) + (0.0542P)2] where P = (Fo2 + 2Fc2)/3
2310 reflections(Δ/σ)max = 0.018
279 parametersΔρmax = 0.15 e Å3
1 restraintΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.38365 (9)0.0550 (5)−0.09403 (17)0.0726 (8)
N20.32924 (10)0.1668 (4)0.19729 (14)0.0582 (7)
O10.36972 (10)0.4751 (5)0.15139 (14)0.0892 (8)
O20.30774 (6)0.0299 (3)0.02574 (11)0.0516 (5)
O30.39908 (8)0.0609 (4)−0.24661 (13)0.0740 (6)
O40.43729 (7)0.3050 (4)−0.14171 (13)0.0649 (6)
C10.34746 (10)0.2991 (5)0.13400 (17)0.0504 (6)
C20.34143 (9)0.2148 (5)0.03370 (16)0.0484 (6)
H20.32840.3407−0.00630.058*
C30.39051 (10)0.1440 (7)0.00143 (19)0.0702 (9)
H3A0.41250.27500.00310.084*
H3B0.40510.02680.04290.084*
C40.34907 (11)−0.1318 (6)−0.1033 (2)0.0677 (8)
H4A0.3621−0.2628−0.06770.081*
H4B0.3443−0.1769−0.16870.081*
C50.30039 (10)−0.0621 (5)−0.06807 (17)0.0529 (7)
H50.2804−0.2014−0.06450.064*
C60.27212 (12)0.1025 (7)−0.13283 (19)0.0747 (9)
H6A0.24290.1509−0.10470.112*
H6B0.26320.0278−0.19160.112*
H6C0.29220.2339−0.14350.112*
C70.33164 (10)0.2209 (5)0.29757 (15)0.0528 (7)
H70.34320.37970.30480.063*
C80.28101 (10)0.2103 (5)0.33392 (16)0.0512 (6)
C90.25146 (10)0.0219 (6)0.31751 (19)0.0610 (7)
H90.2632−0.10260.28500.073*
C100.20460 (11)0.0133 (7)0.3483 (2)0.0739 (9)
H100.1847−0.11430.33530.089*
C110.18741 (13)0.1950 (8)0.3985 (2)0.0795 (10)
H110.15580.19150.41920.095*
C120.21685 (14)0.3780 (8)0.4174 (2)0.0825 (11)
H120.20560.49850.45290.099*
C130.26342 (13)0.3900 (6)0.38514 (18)0.0684 (8)
H130.28290.51890.39790.082*
C140.36812 (9)0.0700 (5)0.35412 (16)0.0486 (6)
C150.38313 (10)0.1338 (6)0.44504 (18)0.0625 (8)
H150.37160.27020.46920.075*
C160.41486 (12)−0.0017 (8)0.5002 (2)0.0775 (10)
H160.42450.04400.56120.093*
C170.43244 (11)−0.2042 (8)0.4660 (3)0.0787 (10)
H170.4539−0.29580.50330.094*
C180.41775 (11)−0.2685 (7)0.3760 (2)0.0744 (9)
H180.4293−0.40510.35210.089*
C190.38604 (11)−0.1329 (6)0.32084 (19)0.0606 (7)
H190.3765−0.17920.25990.073*
C200.40627 (10)0.1365 (5)−0.16836 (19)0.0562 (7)
C210.47203 (10)0.3996 (5)−0.20592 (19)0.0570 (7)
C220.49962 (12)0.5747 (6)−0.1450 (2)0.0765 (9)
H22A0.47690.6863−0.12390.115*
H22B0.52350.6500−0.18050.115*
H22C0.51600.4996−0.09160.115*
C230.50568 (12)0.2101 (6)−0.2339 (3)0.0787 (10)
H23A0.51940.1329−0.17860.118*
H23B0.53170.2743−0.26740.118*
H23C0.48730.1025−0.27350.118*
C240.44503 (13)0.5127 (7)−0.2886 (2)0.0795 (9)
H24A0.42740.3987−0.32620.119*
H24B0.46810.5892−0.32560.119*
H24C0.42220.6228−0.26700.119*
H2A0.3113 (11)0.060 (6)0.181 (2)0.058 (9)*
U11U22U33U12U13U23
N10.0724 (14)0.096 (2)0.0528 (13)−0.0328 (16)0.0287 (11)−0.0251 (14)
N20.0865 (17)0.0596 (16)0.0294 (10)−0.0232 (15)0.0104 (10)−0.0025 (11)
O10.1344 (19)0.0868 (17)0.0501 (11)−0.0546 (17)0.0324 (12)−0.0172 (11)
O20.0594 (10)0.0633 (12)0.0333 (8)−0.0150 (10)0.0120 (7)0.0012 (8)
O30.0932 (14)0.0820 (16)0.0498 (11)−0.0177 (13)0.0264 (10)−0.0213 (11)
O40.0692 (11)0.0794 (14)0.0489 (10)−0.0184 (12)0.0226 (9)−0.0078 (10)
C10.0606 (15)0.0540 (16)0.0374 (13)−0.0084 (14)0.0102 (11)0.0000 (12)
C20.0617 (14)0.0529 (15)0.0318 (12)−0.0124 (13)0.0101 (10)0.0041 (12)
C30.0651 (16)0.104 (3)0.0432 (14)−0.0235 (18)0.0182 (12)−0.0143 (16)
C40.0791 (19)0.066 (2)0.0606 (17)−0.0091 (17)0.0238 (14)−0.0143 (16)
C50.0658 (15)0.0556 (17)0.0388 (13)−0.0199 (14)0.0129 (11)−0.0045 (12)
C60.086 (2)0.091 (2)0.0453 (15)−0.010 (2)−0.0075 (14)−0.0075 (17)
C70.0807 (17)0.0498 (15)0.0284 (11)−0.0124 (14)0.0080 (11)−0.0035 (12)
C80.0711 (16)0.0536 (16)0.0291 (11)0.0047 (14)0.0055 (11)0.0035 (12)
C90.0695 (17)0.0628 (19)0.0515 (15)0.0025 (17)0.0093 (13)−0.0056 (14)
C100.0677 (18)0.091 (2)0.0636 (18)0.000 (2)0.0090 (15)0.0064 (19)
C110.073 (2)0.104 (3)0.0630 (19)0.024 (2)0.0158 (16)0.008 (2)
C120.104 (3)0.088 (3)0.0577 (18)0.035 (2)0.0246 (17)−0.002 (2)
C130.102 (2)0.0628 (19)0.0417 (14)0.0082 (19)0.0094 (15)−0.0034 (15)
C140.0553 (13)0.0569 (17)0.0355 (12)−0.0131 (13)0.0173 (10)−0.0044 (12)
C150.0768 (18)0.072 (2)0.0391 (13)−0.0027 (17)0.0048 (13)−0.0101 (14)
C160.079 (2)0.101 (3)0.0518 (17)−0.007 (2)−0.0050 (15)−0.0046 (19)
C170.0581 (17)0.105 (3)0.074 (2)0.007 (2)0.0088 (15)0.018 (2)
C180.0694 (18)0.078 (2)0.079 (2)0.0090 (18)0.0257 (16)0.0008 (19)
C190.0711 (17)0.0677 (19)0.0446 (14)−0.0044 (16)0.0152 (12)−0.0072 (15)
C200.0553 (14)0.0636 (17)0.0517 (16)−0.0059 (14)0.0183 (12)−0.0122 (14)
C210.0616 (16)0.0558 (16)0.0564 (15)0.0001 (14)0.0221 (12)0.0089 (14)
C220.0780 (19)0.074 (2)0.079 (2)−0.0112 (19)0.0170 (16)0.0076 (19)
C230.0762 (19)0.067 (2)0.097 (3)0.0062 (19)0.0353 (17)0.007 (2)
C240.102 (2)0.071 (2)0.0663 (19)0.007 (2)0.0086 (17)0.0084 (17)
N1—C201.352 (4)C9—H90.9300
N1—C41.439 (4)C10—C111.379 (5)
N1—C31.457 (3)C10—H100.9300
N2—C11.312 (3)C11—C121.349 (6)
N2—C71.463 (3)C11—H110.9300
N2—H2A0.81 (3)C12—C131.383 (5)
O1—C11.207 (4)C12—H120.9300
O2—C21.414 (3)C13—H130.9300
O2—C51.443 (3)C14—C191.376 (4)
O3—C201.203 (3)C14—C151.383 (3)
O4—C201.332 (3)C15—C161.375 (5)
O4—C211.472 (3)C15—H150.9300
C1—C21.511 (3)C16—C171.376 (6)
C2—C31.503 (4)C16—H160.9300
C2—H20.9800C17—C181.369 (5)
C3—H3A0.9700C17—H170.9300
C3—H3B0.9700C18—C191.376 (4)
C4—C51.508 (4)C18—H180.9300
C4—H4A0.9700C19—H190.9300
C4—H4B0.9700C21—C241.497 (4)
C5—C61.504 (4)C21—C221.505 (5)
C5—H50.9800C21—C231.507 (4)
C6—H6A0.9600C22—H22A0.9600
C6—H6B0.9600C22—H22B0.9600
C6—H6C0.9600C22—H22C0.9600
C7—C81.510 (4)C23—H23A0.9600
C7—C141.515 (4)C23—H23B0.9600
C7—H70.9800C23—H23C0.9600
C8—C91.371 (4)C24—H24A0.9600
C8—C131.382 (4)C24—H24B0.9600
C9—C101.382 (4)C24—H24C0.9600
C20—N1—C4121.8 (2)C9—C10—H10120.2
C20—N1—C3125.1 (3)C12—C11—C10119.4 (3)
C4—N1—C3113.2 (2)C12—C11—H11120.3
C1—N2—C7123.7 (2)C10—C11—H11120.3
C1—N2—H2A120 (2)C11—C12—C13121.3 (3)
C7—N2—H2A115 (2)C11—C12—H12119.4
C2—O2—C5113.74 (17)C13—C12—H12119.4
C20—O4—C21121.4 (2)C8—C13—C12120.0 (4)
O1—C1—N2124.5 (2)C8—C13—H13120.0
O1—C1—C2119.3 (2)C12—C13—H13120.0
N2—C1—C2116.1 (2)C19—C14—C15117.8 (3)
O2—C2—C3110.7 (2)C19—C14—C7123.3 (2)
O2—C2—C1110.40 (19)C15—C14—C7118.8 (2)
C3—C2—C1110.0 (2)C16—C15—C14120.9 (3)
O2—C2—H2108.6C16—C15—H15119.6
C3—C2—H2108.6C14—C15—H15119.6
C1—C2—H2108.6C15—C16—C17120.6 (3)
N1—C3—C2109.1 (2)C15—C16—H16119.7
N1—C3—H3A109.9C17—C16—H16119.7
C2—C3—H3A109.9C18—C17—C16118.8 (3)
N1—C3—H3B109.9C18—C17—H17120.6
C2—C3—H3B109.9C16—C17—H17120.6
H3A—C3—H3B108.3C17—C18—C19120.6 (3)
N1—C4—C5110.6 (3)C17—C18—H18119.7
N1—C4—H4A109.5C19—C18—H18119.7
C5—C4—H4A109.5C18—C19—C14121.3 (3)
N1—C4—H4B109.5C18—C19—H19119.4
C5—C4—H4B109.5C14—C19—H19119.4
H4A—C4—H4B108.1O3—C20—O4126.3 (3)
O2—C5—C6111.3 (2)O3—C20—N1123.2 (3)
O2—C5—C4110.1 (2)O4—C20—N1110.5 (2)
C6—C5—C4112.9 (2)O4—C21—C24110.7 (2)
O2—C5—H5107.4O4—C21—C22102.1 (2)
C6—C5—H5107.4C24—C21—C22110.7 (3)
C4—C5—H5107.4O4—C21—C23108.8 (2)
C5—C6—H6A109.5C24—C21—C23112.8 (3)
C5—C6—H6B109.5C22—C21—C23111.2 (3)
H6A—C6—H6B109.5C21—C22—H22A109.5
C5—C6—H6C109.5C21—C22—H22B109.5
H6A—C6—H6C109.5H22A—C22—H22B109.5
H6B—C6—H6C109.5C21—C22—H22C109.5
N2—C7—C8110.5 (2)H22A—C22—H22C109.5
N2—C7—C14112.2 (2)H22B—C22—H22C109.5
C8—C7—C14111.9 (2)C21—C23—H23A109.5
N2—C7—H7107.3C21—C23—H23B109.5
C8—C7—H7107.3H23A—C23—H23B109.5
C14—C7—H7107.3C21—C23—H23C109.5
C9—C8—C13118.3 (3)H23A—C23—H23C109.5
C9—C8—C7120.9 (2)H23B—C23—H23C109.5
C13—C8—C7120.8 (3)C21—C24—H24A109.5
C8—C9—C10121.3 (3)C21—C24—H24B109.5
C8—C9—H9119.4H24A—C24—H24B109.5
C10—C9—H9119.4C21—C24—H24C109.5
C11—C10—C9119.6 (4)H24A—C24—H24C109.5
C11—C10—H10120.2H24B—C24—H24C109.5
C7—N2—C1—O12.9 (5)C9—C10—C11—C12−0.5 (5)
C7—N2—C1—C2−180.0 (2)C10—C11—C12—C131.9 (5)
C5—O2—C2—C3−57.3 (3)C9—C8—C13—C12−0.8 (4)
C5—O2—C2—C1−179.4 (2)C7—C8—C13—C12179.6 (2)
O1—C1—C2—O2−170.2 (3)C11—C12—C13—C8−1.3 (5)
N2—C1—C2—O212.4 (3)N2—C7—C14—C19−17.3 (3)
O1—C1—C2—C367.3 (4)C8—C7—C14—C19107.6 (3)
N2—C1—C2—C3−110.0 (3)N2—C7—C14—C15165.0 (2)
C20—N1—C3—C2123.2 (3)C8—C7—C14—C15−70.1 (3)
C4—N1—C3—C2−56.1 (4)C19—C14—C15—C16−0.1 (4)
O2—C2—C3—N155.5 (3)C7—C14—C15—C16177.8 (3)
C1—C2—C3—N1177.8 (3)C14—C15—C16—C170.0 (5)
C20—N1—C4—C5−124.0 (3)C15—C16—C17—C180.0 (5)
C3—N1—C4—C555.3 (4)C16—C17—C18—C190.1 (5)
C2—O2—C5—C6−70.7 (3)C17—C18—C19—C14−0.2 (4)
C2—O2—C5—C455.4 (3)C15—C14—C19—C180.1 (4)
N1—C4—C5—O2−52.7 (3)C7—C14—C19—C18−177.6 (3)
N1—C4—C5—C672.4 (3)C21—O4—C20—O3−8.3 (4)
C1—N2—C7—C8126.8 (3)C21—O4—C20—N1170.6 (3)
C1—N2—C7—C14−107.5 (3)C4—N1—C20—O30.4 (5)
N2—C7—C8—C951.2 (3)C3—N1—C20—O3−178.8 (3)
C14—C7—C8—C9−74.6 (3)C4—N1—C20—O4−178.5 (3)
N2—C7—C8—C13−129.2 (3)C3—N1—C20—O42.3 (4)
C14—C7—C8—C13105.0 (3)C20—O4—C21—C2463.9 (4)
C13—C8—C9—C102.1 (4)C20—O4—C21—C22−178.2 (2)
C7—C8—C9—C10−178.2 (2)C20—O4—C21—C23−60.5 (3)
C8—C9—C10—C11−1.5 (4)
D—H···AD—HH···AD···AD—H···A
C19—H19···O1i0.932.543.332 (4)144
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C19—H19⋯O1i0.932.543.332 (4)144

Symmetry code: (i) .

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Journal:  CNS Drug Rev       Date:  2004

4.  Structural optimization affording 2-(R)-(1-(R)-3, 5-bis(trifluoromethyl)phenylethoxy)-3-(S)-(4-fluoro)phenyl-4- (3-oxo-1,2,4-triazol-5-yl)methylmorpholine, a potent, orally active, long-acting morpholine acetal human NK-1 receptor antagonist.

Authors:  J J Hale; S G Mills; M MacCoss; P E Finke; M A Cascieri; S Sadowski; E Ber; G G Chicchi; M Kurtz; J Metzger; G Eiermann; N N Tsou; F D Tattersall; N M Rupniak; A R Williams; W Rycroft; R Hargreaves; D E MacIntyre
Journal:  J Med Chem       Date:  1998-11-05       Impact factor: 7.446

5.  Facile route to 3,5-disubstituted morpholines: enantioselective synthesis of O-protected trans-3,5-bis(hydroxymethyl)morpholines.

Authors:  Rajesh Dave; N André Sasaki
Journal:  Org Lett       Date:  2004-01-08       Impact factor: 6.005

Review 6.  Aprepitant: a review of its use in the prevention of chemotherapy-induced nausea and vomiting.

Authors:  Toni M Dando; Caroline M Perry
Journal:  Drugs       Date:  2004       Impact factor: 9.546

  6 in total

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