Literature DB >> 21754813

Neoline from Aconitum flavum Hand.

Wei Liu1, Xiong-Jun Gou, Qin Song, Feng-Zheng Chen.   

Abstract

The title compound, C(24)H(39)NO(6) [systematic name: (1α,6α,14α,16β)-N-ethyl-6,16-dimeth-oxy-4-meth-oxy-methylaconitane-1,8,14-triol], is a C(19)-diterpenoid alkaloid from the roots of Aconitum flavum Hand. The mol-ecule has an aconitane carbon skeleton with four six-membered rings and two five-membered rings. Both five-membered rings adopt envelope conformations. Two six-membered rings adopt chair conformations, whereas the other two adopt boat conformations. Intra-molecular O-H⋯O and O-H⋯N and inter-molecular O-H⋯O hydrogen bonds are present in the structure. In the crystal, one methyl group is disordered over two sites with an occupancy ratio of 0.70 (3):0.30 (3).

Entities:  

Year:  2011        PMID: 21754813      PMCID: PMC3120301          DOI: 10.1107/S1600536811015170

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound is a diterpenoid alkaloid; for the structures of related diterpenoid alkaloids, see: Wang et al. (2009 ▶). The title compound had been previously isolated from the roots of Aconitum carmichaeli Debx, and the chemical structure was established from NMR and MS data, see: Pelletier & Dailey (1976 ▶).

Experimental

Crystal data

C24H39NO6 M = 437.56 Orthorhombic, a = 9.5423 (6) Å b = 13.4727 (9) Å c = 18.4251 (13) Å V = 2368.7 (3) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.42 × 0.33 × 0.30 mm

Data collection

Oxford Diffraction Xcalibur Eos diffractometer 18153 measured reflections 2422 independent reflections 2130 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.177 S = 1.09 2422 reflections 295 parameters H-atom parameters constrained Δρmax = 1.02 e Å−3 Δρmin = −0.18 e Å−3 Data collection: CrysAlis PRO CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO CCD; data reduction: CrysAlis PRO RED (Oxford Diffraction, 2009 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811015170/xu5165sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015170/xu5165Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H39NO6F(000) = 952
Mr = 437.56Dx = 1.227 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 7450 reflections
a = 9.5423 (6) Åθ = 3.0–29.1°
b = 13.4727 (9) ŵ = 0.09 mm1
c = 18.4251 (13) ÅT = 293 K
V = 2368.7 (3) Å3Block, colorless
Z = 40.42 × 0.33 × 0.30 mm
Oxford Diffraction Xcalibur Eos diffractometer2130 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.027
graphiteθmax = 25.2°, θmin = 3.0°
Detector resolution: 10.0 pixels mm-1h = −11→11
ω scansk = −15→16
18153 measured reflectionsl = −17→22
2422 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.177H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.1203P)2 + 0.5493P] where P = (Fo2 + 2Fc2)/3
2422 reflections(Δ/σ)max = 0.001
295 parametersΔρmax = 1.02 e Å3
0 restraintsΔρmin = −0.18 e Å3
Experimental. Because C19-deterpenoid alkaloids from nature have same absolute configurations, although the configuration can?t be determined by present X-ray analysis, it could be confirmed throng comparison with the analogues of the title compound.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.7798 (3)0.62800 (19)0.74631 (16)0.0520 (7)
H1A0.86420.59710.75830.078*
O21.0936 (4)0.5268 (3)0.50259 (19)0.0754 (10)
O31.0460 (3)0.3044 (2)0.6038 (2)0.0673 (9)
O40.7543 (3)0.16599 (19)0.67409 (18)0.0569 (8)
H4A0.67660.13940.65620.085*
O50.4505 (3)0.1912 (2)0.68421 (17)0.0569 (8)
H5A0.36180.18500.70460.085*
O60.4605 (3)0.2734 (2)0.85463 (15)0.0546 (8)
N0.9676 (3)0.4789 (2)0.75691 (18)0.0444 (8)
C10.7509 (4)0.5921 (3)0.6746 (2)0.0438 (9)
H10.65160.60450.66470.053*
C20.8354 (5)0.6511 (3)0.6195 (3)0.0511 (10)
H2A0.80520.63400.57080.061*
H2B0.81940.72150.62670.061*
C30.9901 (4)0.6284 (3)0.6280 (3)0.0513 (10)
H3A1.02280.65640.67340.062*
H3B1.04120.66040.58900.062*
C41.0239 (4)0.5152 (3)0.6270 (2)0.0468 (9)
C50.8907 (4)0.4534 (3)0.6083 (2)0.0401 (8)
H50.85760.46820.55910.048*
C60.9098 (4)0.3402 (3)0.6191 (2)0.0446 (9)
H60.84350.30580.58730.053*
C70.8646 (4)0.3216 (3)0.6992 (2)0.0397 (8)
H70.93770.28570.72580.048*
C80.7251 (4)0.2647 (3)0.7017 (2)0.0411 (8)
C90.6198 (4)0.3157 (3)0.6503 (2)0.0400 (8)
H90.63320.29180.60050.048*
C100.6288 (4)0.4310 (3)0.6524 (2)0.0374 (8)
H100.59430.45590.60570.045*
C110.7761 (4)0.4789 (3)0.66603 (19)0.0353 (8)
C120.5185 (4)0.4590 (3)0.7114 (2)0.0431 (9)
H12A0.56190.49800.74950.052*
H12B0.44320.49760.69010.052*
C130.4617 (4)0.3614 (3)0.7422 (2)0.0437 (9)
H130.36420.36940.75780.052*
C140.4700 (4)0.2950 (3)0.6752 (2)0.0454 (9)
H140.40440.31950.63840.054*
C150.6700 (4)0.2528 (3)0.7800 (2)0.0460 (9)
H15A0.63700.18510.78560.055*
H15B0.74830.26150.81290.055*
C160.5518 (4)0.3230 (3)0.8043 (2)0.0409 (8)
H160.59410.38000.82900.049*
C170.8417 (4)0.4253 (3)0.7316 (2)0.0378 (8)
H170.77310.42140.77110.045*
C181.1442 (5)0.5029 (4)0.5726 (3)0.0576 (11)
H18A1.22120.54660.58540.069*
H18B1.17810.43510.57330.069*
C191.0790 (4)0.4814 (3)0.7014 (2)0.0504 (10)
H19A1.11960.41570.69680.060*
H19B1.15250.52620.71710.060*
C201.0242 (5)0.4409 (4)0.8249 (2)0.0631 (12)
H20A1.10760.47850.83700.076*
H20B1.05230.37240.81770.076*
C210.9240 (7)0.4454 (6)0.8884 (3)0.095 (2)
H21A0.88930.51190.89360.143*
H21B0.97200.42610.93190.143*
H21C0.84690.40110.87990.143*
C221.2024 (8)0.5246 (7)0.4501 (4)0.124 (3)
H22A1.27680.56810.46490.185*
H22B1.16630.54620.40410.185*
H22C1.23770.45820.44570.185*
C23A1.0543 (11)0.2077 (7)0.5829 (9)0.089 (5)0.70 (3)
H23A0.99770.19760.54050.133*0.70 (3)
H23B1.02110.16580.62140.133*0.70 (3)
H23C1.15000.19130.57210.133*0.70 (3)
C23B1.052 (2)0.254 (2)0.5398 (13)0.075 (8)0.30 (3)
H23D1.14330.22540.53420.112*0.30 (3)
H23E1.03460.29950.50050.112*0.30 (3)
H23F0.98240.20290.53960.112*0.30 (3)
C240.5239 (7)0.2531 (4)0.9228 (2)0.0751 (15)
H24A0.59580.20390.91660.113*
H24B0.45430.22870.95590.113*
H24C0.56450.31280.94180.113*
U11U22U33U12U13U23
O10.0503 (15)0.0427 (14)0.0629 (17)0.0046 (13)0.0031 (15)−0.0123 (13)
O20.068 (2)0.094 (3)0.064 (2)0.006 (2)0.0269 (18)0.0062 (18)
O30.0496 (18)0.0652 (19)0.087 (2)0.0161 (16)0.0240 (17)−0.0100 (17)
O40.0625 (19)0.0354 (14)0.0727 (19)0.0028 (14)0.0122 (16)−0.0096 (13)
O50.0566 (18)0.0467 (15)0.0675 (19)−0.0189 (14)0.0077 (15)−0.0066 (13)
O60.0521 (17)0.0628 (17)0.0488 (15)−0.0125 (15)0.0090 (13)−0.0020 (13)
N0.0336 (16)0.0517 (17)0.0479 (17)−0.0041 (15)−0.0059 (14)−0.0014 (15)
C10.038 (2)0.0348 (17)0.058 (2)0.0039 (16)0.0029 (18)−0.0010 (16)
C20.048 (2)0.0353 (19)0.070 (3)−0.0028 (18)0.004 (2)0.0041 (19)
C30.045 (2)0.045 (2)0.064 (3)−0.0098 (18)0.010 (2)−0.0011 (19)
C40.0333 (18)0.050 (2)0.057 (2)−0.0019 (18)0.0062 (18)0.0031 (18)
C50.0345 (18)0.0416 (19)0.0441 (19)0.0010 (16)0.0041 (15)0.0004 (16)
C60.0383 (19)0.0405 (19)0.055 (2)0.0029 (17)0.0067 (18)−0.0040 (18)
C70.0313 (17)0.0379 (18)0.050 (2)0.0079 (15)0.0014 (15)0.0056 (16)
C80.0393 (19)0.0315 (17)0.052 (2)0.0017 (16)0.0057 (17)−0.0005 (16)
C90.0395 (19)0.0395 (19)0.0410 (19)−0.0066 (16)0.0023 (15)−0.0056 (16)
C100.0327 (18)0.0351 (17)0.0443 (19)0.0006 (15)−0.0019 (15)0.0054 (15)
C110.0303 (17)0.0340 (17)0.0417 (18)0.0005 (15)0.0017 (15)0.0005 (14)
C120.0298 (17)0.0411 (19)0.059 (2)0.0032 (16)0.0020 (17)0.0038 (17)
C130.0317 (17)0.046 (2)0.053 (2)−0.0043 (17)0.0048 (17)−0.0044 (17)
C140.039 (2)0.047 (2)0.050 (2)−0.0105 (18)−0.0013 (17)0.0013 (17)
C150.046 (2)0.0397 (18)0.052 (2)0.0004 (18)−0.0017 (18)0.0067 (16)
C160.0405 (19)0.0381 (18)0.044 (2)−0.0064 (16)0.0051 (16)−0.0028 (15)
C170.0273 (16)0.0372 (17)0.049 (2)0.0011 (15)−0.0001 (15)0.0019 (16)
C180.045 (2)0.060 (3)0.067 (3)0.000 (2)0.017 (2)0.004 (2)
C190.0309 (18)0.059 (2)0.062 (2)−0.0050 (18)−0.0025 (17)0.001 (2)
C200.052 (2)0.080 (3)0.057 (3)−0.009 (2)−0.016 (2)0.008 (2)
C210.081 (4)0.150 (6)0.056 (3)−0.024 (4)−0.017 (3)0.007 (3)
C220.122 (6)0.154 (7)0.095 (5)0.040 (5)0.066 (5)0.037 (5)
C23A0.089 (6)0.062 (5)0.115 (11)0.026 (5)0.034 (6)−0.007 (6)
C23B0.075 (12)0.088 (17)0.061 (12)0.025 (11)0.027 (9)−0.008 (11)
C240.090 (4)0.091 (4)0.044 (2)−0.003 (4)0.008 (3)0.008 (2)
O1—C11.434 (5)C9—H90.9800
O1—H1A0.9332C10—C121.559 (5)
O2—C181.414 (6)C10—C111.566 (5)
O2—C221.419 (6)C10—H100.9800
O3—C23B1.359 (17)C11—C171.540 (5)
O3—C23A1.361 (9)C12—C131.531 (5)
O3—C61.415 (5)C12—H12A0.9700
O4—C81.451 (4)C12—H12B0.9700
O4—H4A0.8861C13—C161.523 (5)
O5—C141.421 (5)C13—C141.526 (6)
O5—H5A0.9305C13—H130.9800
O6—C241.421 (6)C14—H140.9800
O6—C161.437 (4)C15—C161.539 (5)
N—C201.456 (5)C15—H15A0.9700
N—C191.475 (5)C15—H15B0.9700
N—C171.478 (4)C16—H160.9800
C1—C21.521 (6)C17—H170.9800
C1—C111.552 (5)C18—H18A0.9700
C1—H10.9800C18—H18B0.9700
C2—C31.516 (6)C19—H19A0.9700
C2—H2A0.9700C19—H19B0.9700
C2—H2B0.9700C20—C211.512 (8)
C3—C41.558 (6)C20—H20A0.9700
C3—H3A0.9700C20—H20B0.9700
C3—H3B0.9700C21—H21A0.9600
C4—C181.534 (5)C21—H21B0.9600
C4—C191.537 (6)C21—H21C0.9600
C4—C51.559 (5)C22—H22A0.9600
C5—C61.549 (5)C22—H22B0.9600
C5—C111.565 (5)C22—H22C0.9600
C5—H50.9800C23A—H23A0.9600
C6—C71.558 (5)C23A—H23B0.9600
C6—H60.9800C23A—H23C0.9600
C7—C171.535 (5)C23B—H23D0.9600
C7—C81.537 (5)C23B—H23E0.9600
C7—H70.9800C23B—H23F0.9600
C8—C91.543 (5)C24—H24A0.9600
C8—C151.543 (5)C24—H24B0.9600
C9—C141.527 (6)C24—H24C0.9600
C9—C101.556 (5)
C1—O1—H1A103.5C10—C12—H12A110.3
C18—O2—C22111.6 (4)C13—C12—H12B110.3
C23B—O3—C23A43.7 (10)C10—C12—H12B110.3
C23B—O3—C6112.4 (9)H12A—C12—H12B108.6
C23A—O3—C6115.9 (5)C16—C13—C14112.3 (3)
C8—O4—H4A109.9C16—C13—C12111.8 (3)
C14—O5—H5A104.7C14—C13—C12100.7 (3)
C24—O6—C16113.7 (4)C16—C13—H13110.6
C20—N—C19109.7 (3)C14—C13—H13110.6
C20—N—C17113.7 (3)C12—C13—H13110.6
C19—N—C17112.2 (3)O5—C14—C13118.4 (3)
O1—C1—C2109.7 (3)O5—C14—C9109.7 (3)
O1—C1—C11113.3 (3)C13—C14—C9100.7 (3)
C2—C1—C11111.4 (3)O5—C14—H14109.2
O1—C1—H1107.4C13—C14—H14109.2
C2—C1—H1107.4C9—C14—H14109.2
C11—C1—H1107.4C16—C15—C8117.2 (3)
C3—C2—C1110.0 (4)C16—C15—H15A108.0
C3—C2—H2A109.7C8—C15—H15A108.0
C1—C2—H2A109.7C16—C15—H15B108.0
C3—C2—H2B109.7C8—C15—H15B108.0
C1—C2—H2B109.7H15A—C15—H15B107.2
H2A—C2—H2B108.2O6—C16—C13107.5 (3)
C2—C3—C4113.5 (3)O6—C16—C15110.3 (3)
C2—C3—H3A108.9C13—C16—C15113.8 (3)
C4—C3—H3A108.9O6—C16—H16108.3
C2—C3—H3B108.9C13—C16—H16108.3
C4—C3—H3B108.9C15—C16—H16108.3
H3A—C3—H3B107.7N—C17—C7116.9 (3)
C18—C4—C19107.2 (3)N—C17—C11110.4 (3)
C18—C4—C3105.5 (3)C7—C17—C11100.4 (3)
C19—C4—C3110.6 (4)N—C17—H17109.6
C18—C4—C5114.0 (3)C7—C17—H17109.6
C19—C4—C5108.5 (3)C11—C17—H17109.6
C3—C4—C5110.9 (3)O2—C18—C4108.5 (4)
C6—C5—C4113.7 (3)O2—C18—H18A110.0
C6—C5—C11102.2 (3)C4—C18—H18A110.0
C4—C5—C11107.6 (3)O2—C18—H18B110.0
C6—C5—H5111.0C4—C18—H18B110.0
C4—C5—H5111.0H18A—C18—H18B108.4
C11—C5—H5111.0N—C19—C4112.2 (3)
O3—C6—C5114.7 (3)N—C19—H19A109.2
O3—C6—C7112.8 (3)C4—C19—H19A109.2
C5—C6—C7104.4 (3)N—C19—H19B109.2
O3—C6—H6108.2C4—C19—H19B109.2
C5—C6—H6108.2H19A—C19—H19B107.9
C7—C6—H6108.2N—C20—C21114.6 (4)
C17—C7—C8108.6 (3)N—C20—H20A108.6
C17—C7—C6105.1 (3)C21—C20—H20A108.6
C8—C7—C6110.4 (3)N—C20—H20B108.6
C17—C7—H7110.9C21—C20—H20B108.6
C8—C7—H7110.9H20A—C20—H20B107.6
C6—C7—H7110.9C20—C21—H21A109.5
O4—C8—C7106.3 (3)C20—C21—H21B109.5
O4—C8—C9108.5 (3)H21A—C21—H21B109.5
C7—C8—C9108.9 (3)C20—C21—H21C109.5
O4—C8—C15107.3 (3)H21A—C21—H21C109.5
C7—C8—C15112.1 (3)H21B—C21—H21C109.5
C9—C8—C15113.5 (3)O2—C22—H22A109.5
C14—C9—C8110.1 (3)O2—C22—H22B109.5
C14—C9—C10103.1 (3)H22A—C22—H22B109.5
C8—C9—C10113.2 (3)O2—C22—H22C109.5
C14—C9—H9110.1H22A—C22—H22C109.5
C8—C9—H9110.1H22B—C22—H22C109.5
C10—C9—H9110.1O3—C23A—H23A109.5
C9—C10—C12102.8 (3)O3—C23A—H23B109.5
C9—C10—C11117.7 (3)O3—C23A—H23C109.5
C12—C10—C11113.2 (3)O3—C23B—H23D109.5
C9—C10—H10107.6O3—C23B—H23E109.5
C12—C10—H10107.6H23D—C23B—H23E109.5
C11—C10—H10107.6O3—C23B—H23F109.5
C17—C11—C1116.4 (3)H23D—C23B—H23F109.5
C17—C11—C598.4 (3)H23E—C23B—H23F109.5
C1—C11—C5113.1 (3)O6—C24—H24A109.5
C17—C11—C10107.3 (3)O6—C24—H24B109.5
C1—C11—C10106.4 (3)H24A—C24—H24B109.5
C5—C11—C10115.3 (3)O6—C24—H24C109.5
C13—C12—C10106.9 (3)H24A—C24—H24C109.5
C13—C12—H12A110.3H24B—C24—H24C109.5
D—H···AD—HH···AD···AD—H···A
O1—H1A···N0.931.872.699 (4)146
O4—H4A···O50.892.332.925 (4)125
O5—H5A···O1i0.931.802.682 (4)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯N0.931.872.699 (4)146
O4—H4A⋯O50.892.332.925 (4)125
O5—H5A⋯O1i0.931.802.682 (4)158

Symmetry code: (i) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  1 in total

1.  C19-Diterpenoid alkaloid arabinosides from an aqueous extract of the lateral root of Aconitum carmichaelii and their analgesic activities.

Authors:  Qinglan Guo; Huan Xia; Xianhua Meng; Gaona Shi; Chengbo Xu; Chenggen Zhu; Tiantai Zhang; Jiangong Shi
Journal:  Acta Pharm Sin B       Date:  2018-03-27       Impact factor: 11.413

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