| Literature DB >> 21754780 |
Hoong-Kun Fun, Kanokorn Sudto, Hui-Ming Ge, Ren-Xiang Tan, Supa Hannongbua, Suchada Chantrapromma.
Abstract
In the structure of the title compound, C(28)H(16)O(6)·H(2)O [systematic name 3,11-bis(4-hydroxyphenyl)-4,12-dioxapentacyclo[8.6.1.1(2,5).0(13,17).0(9,18)]octadeca-1(16),2,5(18),6,8,10,13(17),14-octaene-7,15-diol monohydrate], the hopeahainol C mol-ecule lies about an inversion center with the solvent water mol-ecule located on a crystallographic twofold axis. Hopeahainol C is an oligostillbenoid compound and was isolated from the bark of Shorea roxburghii G. Don. The five central fused rings are essentially planar with an r.m.s. deviation of 0.0173 (3) Å. The 4-hy-droxy-phenyl ring is twisted with respect to this plane, with the dihedral angle between the phenyl ring and the fused-ring system being 41.70 (10)°. The crystal features inter-molecular O-H⋯O hydrogen bonds. These inter-actions link the hopeahainol C mol-ecules into chains along the b axis. Water mol-ecules are located inter-stitially between the hopeahainol C mol-ecules linked by O(water)-H⋯O(hy-droxy) and O(hy-droxy)-H⋯O(water) hydrogen bonds. π-π inter-actions are also observed with centroid-centroid distances of 3.6056 (17) and 3.5622 (17) Å. Short O⋯O contacts [2.703 (2)-2.720 (3) Å] are also present in the crystal.Entities:
Year: 2011 PMID: 21754780 PMCID: PMC3120350 DOI: 10.1107/S1600536811017053
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C28H16O6·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 2171 reflections |
| θ = 2.0–24.8° | |
| µ = 0.11 mm−1 | |
| β = 108.933 (4)° | Needle, colorless |
| 0.25 × 0.15 × 0.05 mm | |
| Bruker APEX DUO CCD area-detector diffractometer | 2171 independent reflections |
| Radiation source: sealed tube | 1463 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.5°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 7974 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2171 reflections | (Δ/σ)max = 0.001 |
| 163 parameters | Δρmax = 0.27 e Å−3 |
| 0 restraints | Δρmin = −0.35 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1W | 0.0000 | 0.5114 (9) | 0.2500 | 0.0199 (7) | |
| H1W1 | 0.0200 (15) | 0.649 (9) | 0.2803 (13) | 0.036 (10)* | |
| O1 | 0.10067 (8) | 0.6569 (5) | 0.01488 (7) | 0.0151 (5) | |
| O2 | 0.08243 (8) | 0.1345 (5) | −0.16160 (7) | 0.0170 (5) | |
| H2A | 0.1076 | 0.0687 | −0.1782 | 0.026* | |
| O3 | 0.11424 (8) | 1.1827 (5) | 0.25471 (7) | 0.0193 (5) | |
| H3A | 0.0782 | 1.2799 | 0.2487 | 0.029* | |
| C1 | 0.14502 (11) | 0.9053 (7) | 0.10634 (10) | 0.0136 (6) | |
| C2 | 0.08471 (11) | 1.0602 (8) | 0.10499 (10) | 0.0156 (6) | |
| H2B | 0.0521 | 1.1031 | 0.0709 | 0.019* | |
| C3 | 0.07334 (12) | 1.1499 (7) | 0.15414 (10) | 0.0155 (6) | |
| H3B | 0.0331 | 1.2504 | 0.1530 | 0.019* | |
| C4 | 0.12224 (12) | 1.0890 (8) | 0.20487 (10) | 0.0156 (6) | |
| C5 | 0.18124 (12) | 0.9313 (8) | 0.20726 (10) | 0.0165 (6) | |
| H5A | 0.2133 | 0.8855 | 0.2415 | 0.020* | |
| C6 | 0.19264 (12) | 0.8408 (8) | 0.15796 (10) | 0.0152 (6) | |
| H6A | 0.2327 | 0.7357 | 0.1595 | 0.018* | |
| C7 | 0.15626 (11) | 0.8033 (7) | 0.05476 (10) | 0.0136 (6) | |
| C8 | 0.20988 (11) | 0.8046 (8) | 0.03621 (10) | 0.0130 (6) | |
| C9 | 0.18721 (11) | 0.6449 (7) | −0.01786 (10) | 0.0124 (6) | |
| C10 | 0.22099 (11) | 0.5734 (7) | −0.05605 (10) | 0.0119 (6) | |
| C11 | 0.18493 (12) | 0.4004 (7) | −0.10467 (10) | 0.0150 (6) | |
| H11A | 0.2051 | 0.3459 | −0.1312 | 0.018* | |
| C12 | 0.11835 (12) | 0.3081 (7) | −0.11382 (10) | 0.0137 (6) | |
| C13 | 0.08421 (11) | 0.3852 (7) | −0.07681 (10) | 0.0140 (6) | |
| H13A | 0.0397 | 0.3262 | −0.0838 | 0.017* | |
| C14 | 0.12110 (11) | 0.5554 (7) | −0.02905 (10) | 0.0129 (6) |
| O1W | 0.0212 (12) | 0.026 (2) | 0.0148 (13) | 0.000 | 0.0088 (11) | 0.000 |
| O1 | 0.0162 (8) | 0.0197 (12) | 0.0120 (8) | −0.0010 (8) | 0.0081 (7) | −0.0009 (9) |
| O2 | 0.0175 (8) | 0.0233 (13) | 0.0119 (8) | −0.0030 (8) | 0.0070 (7) | −0.0049 (9) |
| O3 | 0.0252 (9) | 0.0244 (13) | 0.0129 (9) | 0.0047 (9) | 0.0128 (7) | 0.0005 (9) |
| C1 | 0.0164 (11) | 0.0117 (16) | 0.0152 (12) | −0.0029 (11) | 0.0086 (9) | −0.0007 (12) |
| C2 | 0.0161 (11) | 0.0175 (17) | 0.0154 (12) | −0.0018 (11) | 0.0079 (9) | 0.0004 (12) |
| C3 | 0.0158 (11) | 0.0165 (17) | 0.0180 (12) | −0.0008 (11) | 0.0106 (9) | −0.0006 (13) |
| C4 | 0.0217 (12) | 0.0167 (17) | 0.0129 (12) | −0.0037 (11) | 0.0117 (10) | −0.0019 (12) |
| C5 | 0.0189 (11) | 0.0174 (17) | 0.0139 (12) | −0.0006 (11) | 0.0064 (9) | 0.0015 (12) |
| C6 | 0.0165 (11) | 0.0155 (16) | 0.0171 (12) | 0.0000 (11) | 0.0102 (9) | 0.0002 (12) |
| C7 | 0.0157 (11) | 0.0130 (16) | 0.0120 (11) | −0.0012 (11) | 0.0044 (9) | −0.0005 (12) |
| C8 | 0.0170 (11) | 0.0128 (16) | 0.0109 (11) | 0.0002 (11) | 0.0069 (9) | 0.0009 (12) |
| C9 | 0.0166 (11) | 0.0099 (15) | 0.0122 (11) | 0.0013 (11) | 0.0068 (9) | 0.0019 (12) |
| C10 | 0.0155 (11) | 0.0102 (16) | 0.0122 (11) | 0.0019 (10) | 0.0073 (9) | 0.0035 (12) |
| C11 | 0.0198 (11) | 0.0156 (17) | 0.0128 (12) | 0.0003 (11) | 0.0097 (9) | 0.0008 (12) |
| C12 | 0.0202 (11) | 0.0100 (16) | 0.0116 (11) | −0.0006 (11) | 0.0060 (9) | 0.0013 (12) |
| C13 | 0.0140 (10) | 0.0140 (17) | 0.0152 (12) | −0.0010 (11) | 0.0065 (9) | 0.0015 (12) |
| C14 | 0.0178 (11) | 0.0114 (16) | 0.0130 (12) | 0.0010 (11) | 0.0099 (9) | 0.0017 (12) |
| O1W—H1W1 | 0.92 (3) | C5—C6 | 1.392 (3) |
| O1—C14 | 1.377 (3) | C5—H5A | 0.9300 |
| O1—C7 | 1.399 (3) | C6—H6A | 0.9300 |
| O2—C12 | 1.377 (3) | C7—C8 | 1.365 (3) |
| O2—H2A | 0.8200 | C8—C9 | 1.436 (3) |
| O3—C4 | 1.377 (3) | C8—C10i | 1.465 (3) |
| O3—H3A | 0.8200 | C9—C14 | 1.382 (3) |
| C1—C6 | 1.392 (3) | C9—C10 | 1.406 (3) |
| C1—C2 | 1.403 (3) | C10—C11 | 1.392 (3) |
| C1—C7 | 1.457 (3) | C10—C8i | 1.465 (3) |
| C2—C3 | 1.388 (3) | C11—C12 | 1.402 (3) |
| C2—H2B | 0.9300 | C11—H11A | 0.9300 |
| C3—C4 | 1.386 (4) | C12—C13 | 1.391 (3) |
| C3—H3B | 0.9300 | C13—C14 | 1.376 (4) |
| C4—C5 | 1.375 (3) | C13—H13A | 0.9300 |
| C14—O1—C7 | 106.61 (17) | O1—C7—C1 | 114.32 (19) |
| C12—O2—H2A | 109.5 | C7—C8—C9 | 105.6 (2) |
| C4—O3—H3A | 109.5 | C7—C8—C10i | 137.4 (2) |
| C6—C1—C2 | 118.5 (2) | C9—C8—C10i | 116.94 (19) |
| C6—C1—C7 | 121.0 (2) | C14—C9—C10 | 121.3 (2) |
| C2—C1—C7 | 120.4 (2) | C14—C9—C8 | 107.8 (2) |
| C3—C2—C1 | 120.5 (2) | C10—C9—C8 | 130.8 (2) |
| C3—C2—H2B | 119.8 | C11—C10—C9 | 116.5 (2) |
| C1—C2—H2B | 119.8 | C11—C10—C8i | 131.2 (2) |
| C4—C3—C2 | 119.7 (2) | C9—C10—C8i | 112.2 (2) |
| C4—C3—H3B | 120.2 | C10—C11—C12 | 120.2 (2) |
| C2—C3—H3B | 120.2 | C10—C11—H11A | 119.9 |
| C5—C4—O3 | 117.2 (2) | C12—C11—H11A | 119.9 |
| C5—C4—C3 | 120.8 (2) | O2—C12—C13 | 115.8 (2) |
| O3—C4—C3 | 122.0 (2) | O2—C12—C11 | 120.6 (2) |
| C4—C5—C6 | 119.5 (2) | C13—C12—C11 | 123.5 (2) |
| C4—C5—H5A | 120.3 | C14—C13—C12 | 115.0 (2) |
| C6—C5—H5A | 120.3 | C14—C13—H13A | 122.5 |
| C1—C6—C5 | 121.0 (2) | C12—C13—H13A | 122.5 |
| C1—C6—H6A | 119.5 | C13—C14—O1 | 127.5 (2) |
| C5—C6—H6A | 119.5 | C13—C14—C9 | 123.3 (2) |
| C8—C7—O1 | 110.7 (2) | O1—C14—C9 | 109.2 (2) |
| C8—C7—C1 | 134.9 (2) | ||
| C6—C1—C2—C3 | 0.7 (4) | C10i—C8—C9—C14 | −178.9 (2) |
| C7—C1—C2—C3 | 178.5 (3) | C7—C8—C9—C10 | −179.2 (3) |
| C1—C2—C3—C4 | 0.7 (4) | C10i—C8—C9—C10 | 2.0 (5) |
| C2—C3—C4—C5 | −1.9 (4) | C14—C9—C10—C11 | −1.7 (4) |
| C2—C3—C4—O3 | 178.0 (3) | C8—C9—C10—C11 | 177.4 (3) |
| O3—C4—C5—C6 | −178.1 (2) | C14—C9—C10—C8i | 179.0 (2) |
| C3—C4—C5—C6 | 1.8 (4) | C8—C9—C10—C8i | −1.9 (5) |
| C2—C1—C6—C5 | −0.8 (4) | C9—C10—C11—C12 | 0.4 (4) |
| C7—C1—C6—C5 | −178.5 (3) | C8i—C10—C11—C12 | 179.5 (3) |
| C4—C5—C6—C1 | −0.5 (4) | C10—C11—C12—O2 | −179.5 (2) |
| C14—O1—C7—C8 | 1.7 (3) | C10—C11—C12—C13 | 1.2 (4) |
| C14—O1—C7—C1 | −176.0 (2) | O2—C12—C13—C14 | 179.3 (2) |
| C6—C1—C7—C8 | −39.1 (5) | C11—C12—C13—C14 | −1.3 (4) |
| C2—C1—C7—C8 | 143.2 (3) | C12—C13—C14—O1 | −178.7 (3) |
| C6—C1—C7—O1 | 138.0 (3) | C12—C13—C14—C9 | −0.1 (4) |
| C2—C1—C7—O1 | −39.8 (4) | C7—O1—C14—C13 | 177.0 (3) |
| O1—C7—C8—C9 | −1.0 (3) | C7—O1—C14—C9 | −1.7 (3) |
| C1—C7—C8—C9 | 176.1 (3) | C10—C9—C14—C13 | 1.6 (4) |
| O1—C7—C8—C10i | 177.4 (3) | C8—C9—C14—C13 | −177.7 (3) |
| C1—C7—C8—C10i | −5.5 (6) | C10—C9—C14—O1 | −179.6 (2) |
| C7—C8—C9—C14 | −0.1 (3) | C8—C9—C14—O1 | 1.1 (3) |
| H··· | ||||
| O1W—H1W1···O2ii | 0.92 (3) | 1.83 (3) | 2.720 (2) | 163 (3) |
| O3—H3A···O1Wiii | 0.82 | 1.89 | 2.703 (2) | 169 |
| O2—H2A···O3iv | 0.82 | 2.00 | 2.716 (3) | 145 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1 | 0.92 (3) | 1.83 (3) | 2.720 (2) | 163 (3) |
| O3—H3 | 0.82 | 1.89 | 2.703 (2) | 169 |
| O2—H2 | 0.82 | 2.00 | 2.716 (3) | 145 |
Symmetry codes: (i) ; (ii) ; (iii) .