Literature DB >> 21754780

Hopeahainol C monohydrate.

Hoong-Kun Fun, Kanokorn Sudto, Hui-Ming Ge, Ren-Xiang Tan, Supa Hannongbua, Suchada Chantrapromma.   

Abstract

In the structure of the title compound, C(28)H(16)O(6)·H(2)O [systematic name 3,11-bis(4-hydroxyphenyl)-4,12-dioxapentacyclo[8.6.1.1(2,5).0(13,17).0(9,18)]octadeca-1(16),2,5(18),6,8,10,13(17),14-octaene-7,15-diol monohydrate], the hopeahainol C mol-ecule lies about an inversion center with the solvent water mol-ecule located on a crystallographic twofold axis. Hopeahainol C is an oligostillbenoid compound and was isolated from the bark of Shorea roxburghii G. Don. The five central fused rings are essentially planar with an r.m.s. deviation of 0.0173 (3) Å. The 4-hy-droxy-phenyl ring is twisted with respect to this plane, with the dihedral angle between the phenyl ring and the fused-ring system being 41.70 (10)°. The crystal features inter-molecular O-H⋯O hydrogen bonds. These inter-actions link the hopeahainol C mol-ecules into chains along the b axis. Water mol-ecules are located inter-stitially between the hopeahainol C mol-ecules linked by O(water)-H⋯O(hy-droxy) and O(hy-droxy)-H⋯O(water) hydrogen bonds. π-π inter-actions are also observed with centroid-centroid distances of 3.6056 (17) and 3.5622 (17) Å. Short O⋯O contacts [2.703 (2)-2.720 (3) Å] are also present in the crystal.

Entities:  

Year:  2011        PMID: 21754780      PMCID: PMC3120350          DOI: 10.1107/S1600536811017053

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For background to oligostillbenoids and their activities, see: Cai et al. (2003 ▶); Donnelly et al. (2004 ▶); Ge et al. (2009 ▶); Jang & Pezzuto (1999 ▶); Stivala et al. (2001 ▶). For details of Dipterocarpaceae plants, see: Gorham (1995 ▶); Hakim (2002 ▶); Sotheeswaran & Pasuphaty (1993 ▶); Symington (1974 ▶). For the stability of the temperature controller used in the data collection, see Cosier & Glazer, (1986 ▶).

Experimental

Crystal data

C28H16O6·H2O M = 466.42 Monoclinic, a = 21.225 (4) Å b = 3.8500 (7) Å c = 25.353 (5) Å β = 108.933 (4)° V = 1959.7 (6) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.25 × 0.15 × 0.05 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.972, T max = 0.994 7974 measured reflections 2171 independent reflections 1463 reflections with I > 2σ(I) R int = 0.082

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.161 S = 1.07 2171 reflections 163 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.35 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811017053/sj5138sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811017053/sj5138Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811017053/sj5138Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C28H16O6·H2OF(000) = 968
Mr = 466.42Dx = 1.581 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2171 reflections
a = 21.225 (4) Åθ = 2.0–24.8°
b = 3.8500 (7) ŵ = 0.11 mm1
c = 25.353 (5) ÅT = 100 K
β = 108.933 (4)°Needle, colorless
V = 1959.7 (6) Å30.25 × 0.15 × 0.05 mm
Z = 4
Bruker APEX DUO CCD area-detector diffractometer2171 independent reflections
Radiation source: sealed tube1463 reflections with I > 2σ(I)
graphiteRint = 0.082
φ and ω scansθmax = 27.5°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −27→27
Tmin = 0.972, Tmax = 0.994k = −4→4
7974 measured reflectionsl = −32→32
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.068Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.161H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0792P)2 + 1.9771P] where P = (Fo2 + 2Fc2)/3
2171 reflections(Δ/σ)max = 0.001
163 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.35 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1W0.00000.5114 (9)0.25000.0199 (7)
H1W10.0200 (15)0.649 (9)0.2803 (13)0.036 (10)*
O10.10067 (8)0.6569 (5)0.01488 (7)0.0151 (5)
O20.08243 (8)0.1345 (5)−0.16160 (7)0.0170 (5)
H2A0.10760.0687−0.17820.026*
O30.11424 (8)1.1827 (5)0.25471 (7)0.0193 (5)
H3A0.07821.27990.24870.029*
C10.14502 (11)0.9053 (7)0.10634 (10)0.0136 (6)
C20.08471 (11)1.0602 (8)0.10499 (10)0.0156 (6)
H2B0.05211.10310.07090.019*
C30.07334 (12)1.1499 (7)0.15414 (10)0.0155 (6)
H3B0.03311.25040.15300.019*
C40.12224 (12)1.0890 (8)0.20487 (10)0.0156 (6)
C50.18124 (12)0.9313 (8)0.20726 (10)0.0165 (6)
H5A0.21330.88550.24150.020*
C60.19264 (12)0.8408 (8)0.15796 (10)0.0152 (6)
H6A0.23270.73570.15950.018*
C70.15626 (11)0.8033 (7)0.05476 (10)0.0136 (6)
C80.20988 (11)0.8046 (8)0.03621 (10)0.0130 (6)
C90.18721 (11)0.6449 (7)−0.01786 (10)0.0124 (6)
C100.22099 (11)0.5734 (7)−0.05605 (10)0.0119 (6)
C110.18493 (12)0.4004 (7)−0.10467 (10)0.0150 (6)
H11A0.20510.3459−0.13120.018*
C120.11835 (12)0.3081 (7)−0.11382 (10)0.0137 (6)
C130.08421 (11)0.3852 (7)−0.07681 (10)0.0140 (6)
H13A0.03970.3262−0.08380.017*
C140.12110 (11)0.5554 (7)−0.02905 (10)0.0129 (6)
U11U22U33U12U13U23
O1W0.0212 (12)0.026 (2)0.0148 (13)0.0000.0088 (11)0.000
O10.0162 (8)0.0197 (12)0.0120 (8)−0.0010 (8)0.0081 (7)−0.0009 (9)
O20.0175 (8)0.0233 (13)0.0119 (8)−0.0030 (8)0.0070 (7)−0.0049 (9)
O30.0252 (9)0.0244 (13)0.0129 (9)0.0047 (9)0.0128 (7)0.0005 (9)
C10.0164 (11)0.0117 (16)0.0152 (12)−0.0029 (11)0.0086 (9)−0.0007 (12)
C20.0161 (11)0.0175 (17)0.0154 (12)−0.0018 (11)0.0079 (9)0.0004 (12)
C30.0158 (11)0.0165 (17)0.0180 (12)−0.0008 (11)0.0106 (9)−0.0006 (13)
C40.0217 (12)0.0167 (17)0.0129 (12)−0.0037 (11)0.0117 (10)−0.0019 (12)
C50.0189 (11)0.0174 (17)0.0139 (12)−0.0006 (11)0.0064 (9)0.0015 (12)
C60.0165 (11)0.0155 (16)0.0171 (12)0.0000 (11)0.0102 (9)0.0002 (12)
C70.0157 (11)0.0130 (16)0.0120 (11)−0.0012 (11)0.0044 (9)−0.0005 (12)
C80.0170 (11)0.0128 (16)0.0109 (11)0.0002 (11)0.0069 (9)0.0009 (12)
C90.0166 (11)0.0099 (15)0.0122 (11)0.0013 (11)0.0068 (9)0.0019 (12)
C100.0155 (11)0.0102 (16)0.0122 (11)0.0019 (10)0.0073 (9)0.0035 (12)
C110.0198 (11)0.0156 (17)0.0128 (12)0.0003 (11)0.0097 (9)0.0008 (12)
C120.0202 (11)0.0100 (16)0.0116 (11)−0.0006 (11)0.0060 (9)0.0013 (12)
C130.0140 (10)0.0140 (17)0.0152 (12)−0.0010 (11)0.0065 (9)0.0015 (12)
C140.0178 (11)0.0114 (16)0.0130 (12)0.0010 (11)0.0099 (9)0.0017 (12)
O1W—H1W10.92 (3)C5—C61.392 (3)
O1—C141.377 (3)C5—H5A0.9300
O1—C71.399 (3)C6—H6A0.9300
O2—C121.377 (3)C7—C81.365 (3)
O2—H2A0.8200C8—C91.436 (3)
O3—C41.377 (3)C8—C10i1.465 (3)
O3—H3A0.8200C9—C141.382 (3)
C1—C61.392 (3)C9—C101.406 (3)
C1—C21.403 (3)C10—C111.392 (3)
C1—C71.457 (3)C10—C8i1.465 (3)
C2—C31.388 (3)C11—C121.402 (3)
C2—H2B0.9300C11—H11A0.9300
C3—C41.386 (4)C12—C131.391 (3)
C3—H3B0.9300C13—C141.376 (4)
C4—C51.375 (3)C13—H13A0.9300
C14—O1—C7106.61 (17)O1—C7—C1114.32 (19)
C12—O2—H2A109.5C7—C8—C9105.6 (2)
C4—O3—H3A109.5C7—C8—C10i137.4 (2)
C6—C1—C2118.5 (2)C9—C8—C10i116.94 (19)
C6—C1—C7121.0 (2)C14—C9—C10121.3 (2)
C2—C1—C7120.4 (2)C14—C9—C8107.8 (2)
C3—C2—C1120.5 (2)C10—C9—C8130.8 (2)
C3—C2—H2B119.8C11—C10—C9116.5 (2)
C1—C2—H2B119.8C11—C10—C8i131.2 (2)
C4—C3—C2119.7 (2)C9—C10—C8i112.2 (2)
C4—C3—H3B120.2C10—C11—C12120.2 (2)
C2—C3—H3B120.2C10—C11—H11A119.9
C5—C4—O3117.2 (2)C12—C11—H11A119.9
C5—C4—C3120.8 (2)O2—C12—C13115.8 (2)
O3—C4—C3122.0 (2)O2—C12—C11120.6 (2)
C4—C5—C6119.5 (2)C13—C12—C11123.5 (2)
C4—C5—H5A120.3C14—C13—C12115.0 (2)
C6—C5—H5A120.3C14—C13—H13A122.5
C1—C6—C5121.0 (2)C12—C13—H13A122.5
C1—C6—H6A119.5C13—C14—O1127.5 (2)
C5—C6—H6A119.5C13—C14—C9123.3 (2)
C8—C7—O1110.7 (2)O1—C14—C9109.2 (2)
C8—C7—C1134.9 (2)
C6—C1—C2—C30.7 (4)C10i—C8—C9—C14−178.9 (2)
C7—C1—C2—C3178.5 (3)C7—C8—C9—C10−179.2 (3)
C1—C2—C3—C40.7 (4)C10i—C8—C9—C102.0 (5)
C2—C3—C4—C5−1.9 (4)C14—C9—C10—C11−1.7 (4)
C2—C3—C4—O3178.0 (3)C8—C9—C10—C11177.4 (3)
O3—C4—C5—C6−178.1 (2)C14—C9—C10—C8i179.0 (2)
C3—C4—C5—C61.8 (4)C8—C9—C10—C8i−1.9 (5)
C2—C1—C6—C5−0.8 (4)C9—C10—C11—C120.4 (4)
C7—C1—C6—C5−178.5 (3)C8i—C10—C11—C12179.5 (3)
C4—C5—C6—C1−0.5 (4)C10—C11—C12—O2−179.5 (2)
C14—O1—C7—C81.7 (3)C10—C11—C12—C131.2 (4)
C14—O1—C7—C1−176.0 (2)O2—C12—C13—C14179.3 (2)
C6—C1—C7—C8−39.1 (5)C11—C12—C13—C14−1.3 (4)
C2—C1—C7—C8143.2 (3)C12—C13—C14—O1−178.7 (3)
C6—C1—C7—O1138.0 (3)C12—C13—C14—C9−0.1 (4)
C2—C1—C7—O1−39.8 (4)C7—O1—C14—C13177.0 (3)
O1—C7—C8—C9−1.0 (3)C7—O1—C14—C9−1.7 (3)
C1—C7—C8—C9176.1 (3)C10—C9—C14—C131.6 (4)
O1—C7—C8—C10i177.4 (3)C8—C9—C14—C13−177.7 (3)
C1—C7—C8—C10i−5.5 (6)C10—C9—C14—O1−179.6 (2)
C7—C8—C9—C14−0.1 (3)C8—C9—C14—O11.1 (3)
D—H···AD—HH···AD···AD—H···A
O1W—H1W1···O2ii0.92 (3)1.83 (3)2.720 (2)163 (3)
O3—H3A···O1Wiii0.821.892.703 (2)169
O2—H2A···O3iv0.822.002.716 (3)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W1⋯O2i0.92 (3)1.83 (3)2.720 (2)163 (3)
O3—H3A⋯O1Wii0.821.892.703 (2)169
O2—H2A⋯O3iii0.822.002.716 (3)145

Symmetry codes: (i) ; (ii) ; (iii) .

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