| Literature DB >> 21754759 |
Giovanna Brancatelli, Giuseppe Bruno, Francesco Nicoló, Loredana Canfora, Giuseppe Ruisi.
Abstract
The zwitterionic title compound, C(12)H(17)NO(3)S, is a reduced Schiff base derived from (S)-N-(2-hy-droxy-benzyl-idene)methio-nine. An intra-molecular inter-action between the N-H and carboxyl-ate groups forms a roughly planar (r.m.s. deviation = 0.1405 Å) five-membered ring containing the H(N), N, Cα, C(carboxyl-ate) and O atoms in a penta-gonal conformation. In the crystal, a supra-molecular triangle-shaped motif is generated by mol-ecules held together by O-H⋯O and N-H⋯O hydrogen bonds.Entities:
Year: 2011 PMID: 21754759 PMCID: PMC3120446 DOI: 10.1107/S1600536811016564
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H17NO3S | |
| Triclinic, | |
| Hall symbol: P 1 | Mo |
| Cell parameters from 4292 reflections | |
| θ = 3.6–27.0° | |
| µ = 0.25 mm−1 | |
| α = 98.200 (3)° | |
| β = 90.780 (3)° | Prysmatic, yellow |
| γ = 96.849 (3)° | 0.53 × 0.44 × 0.16 mm |
| Bruker APEXII CCD diffractometer | 1966 reflections with |
| graphite | |
| φ and ω scans | θmax = 26°, θmin = 3.8° |
| Absorption correction: multi-scan ( | |
| 7430 measured reflections | |
| 2324 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 2324 reflections | Δρmax = 0.79 e Å−3 |
| 156 parameters | Δρmin = −0.41 e Å−3 |
| 3 restraints | Absolute structure: Assigned from the known absolute structure of the starting material; the Flack (1983) parameter is consistent with this assignment, 1119 Friedel-pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.12 (19) |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.1397 (7) | 0.8261 (5) | 0.6478 (4) | 0.0378 (8) | |
| C2 | 0.1286 (8) | 1.0229 (6) | 0.7378 (4) | 0.0480 (10) | |
| H2 | 0.0037 | 1.1192 | 0.7301 | 0.058* | |
| C3 | 0.3045 (9) | 1.0752 (9) | 0.8391 (4) | 0.0595 (11) | |
| H3 | 0.2993 | 1.2085 | 0.8984 | 0.071* | |
| C4 | 0.4846 (11) | 0.9326 (10) | 0.8521 (5) | 0.0719 (14) | |
| H4 | 0.6064 | 0.9719 | 0.918 | 0.086* | |
| C5 | 0.4866 (8) | 0.7305 (8) | 0.7677 (5) | 0.0592 (11) | |
| H5 | 0.6034 | 0.6289 | 0.7807 | 0.071* | |
| C6 | 0.3176 (7) | 0.6750 (6) | 0.6635 (4) | 0.0437 (9) | |
| C7 | 0.3226 (7) | 0.4586 (6) | 0.5712 (5) | 0.0523 (11) | |
| H7A | 0.1526 | 0.4057 | 0.5364 | 0.063* | |
| H7B | 0.3754 | 0.3381 | 0.6164 | 0.063* | |
| N1 | 0.4971 (5) | 0.4903 (4) | 0.4628 (3) | 0.0365 (7) | |
| H1A | 0.4664 | 0.6175 | 0.4288 | 0.044* | |
| H1B | 0.6586 | 0.5129 | 0.4927 | 0.044* | |
| C12 | 0.982 (2) | 0.7692 (13) | 0.1065 (9) | 0.125 (3) | |
| H12A | 0.8321 | 0.8384 | 0.0902 | 0.187* | |
| H12B | 1.1162 | 0.8272 | 0.0553 | 0.187* | |
| H12C | 1.0313 | 0.8083 | 0.1955 | 0.187* | |
| C8 | 0.4605 (9) | 0.2821 (6) | 0.3620 (4) | 0.0528 (11) | |
| H8 | 0.2775 | 0.234 | 0.3533 | 0.063* | |
| C9 | 0.5770 (7) | 0.0784 (5) | 0.4082 (4) | 0.0396 (8) | |
| O1 | −0.0230 (5) | 0.7724 (4) | 0.5440 (3) | 0.0481 (7) | |
| H1 | −0.0734 | 0.8918 | 0.5264 | 0.072* | |
| O2 | 0.7473 (5) | 0.1274 (4) | 0.4933 (3) | 0.0542 (8) | |
| O3 | 0.4885 (6) | −0.1164 (4) | 0.3543 (3) | 0.0543 (8) | |
| S1 | 0.9203 (4) | 0.4659 (3) | 0.0671 (2) | 0.1140 (8) | |
| C10 | 0.5426 (11) | 0.3361 (8) | 0.2347 (5) | 0.0673 (14) | |
| H10A | 0.4849 | 0.2056 | 0.1691 | 0.081* | |
| H10B | 0.4698 | 0.472 | 0.2149 | 0.081* | |
| C11 | 0.8008 (11) | 0.3782 (9) | 0.2368 (6) | 0.0749 (15) | |
| H11A | 0.8727 | 0.24 | 0.2535 | 0.09* | |
| H11B | 0.8581 | 0.5041 | 0.3051 | 0.09* |
| C1 | 0.0352 (18) | 0.0332 (17) | 0.047 (2) | 0.0050 (13) | 0.0058 (17) | 0.0120 (14) |
| C2 | 0.049 (2) | 0.0382 (19) | 0.060 (2) | 0.0137 (15) | 0.015 (2) | 0.0095 (17) |
| C3 | 0.064 (3) | 0.068 (3) | 0.045 (2) | 0.008 (2) | 0.007 (2) | 0.0004 (19) |
| C4 | 0.070 (3) | 0.091 (4) | 0.054 (3) | 0.013 (3) | 0.000 (3) | 0.005 (3) |
| C5 | 0.047 (2) | 0.071 (3) | 0.065 (3) | 0.013 (2) | 0.002 (2) | 0.025 (2) |
| C6 | 0.0355 (19) | 0.0368 (18) | 0.063 (2) | 0.0053 (14) | 0.0139 (19) | 0.0199 (16) |
| C7 | 0.037 (2) | 0.0255 (16) | 0.096 (3) | 0.0053 (13) | 0.014 (2) | 0.0138 (19) |
| N1 | 0.0462 (16) | 0.0128 (11) | 0.0509 (17) | 0.0053 (10) | −0.0084 (14) | 0.0058 (10) |
| C12 | 0.183 (9) | 0.078 (4) | 0.121 (6) | 0.010 (5) | 0.017 (6) | 0.043 (4) |
| C8 | 0.079 (3) | 0.0190 (15) | 0.059 (2) | 0.0112 (16) | −0.025 (2) | 0.0016 (15) |
| C9 | 0.052 (2) | 0.0163 (15) | 0.0514 (19) | 0.0096 (13) | 0.0019 (19) | 0.0044 (13) |
| O1 | 0.0499 (16) | 0.0286 (12) | 0.0668 (18) | 0.0114 (10) | −0.0099 (15) | 0.0056 (11) |
| O2 | 0.0539 (16) | 0.0272 (12) | 0.082 (2) | 0.0108 (10) | −0.0169 (16) | 0.0075 (12) |
| O3 | 0.081 (2) | 0.0182 (12) | 0.0622 (17) | 0.0056 (11) | −0.0112 (16) | 0.0037 (11) |
| S1 | 0.1068 (14) | 0.1004 (13) | 0.1180 (14) | −0.0026 (10) | 0.0483 (12) | −0.0327 (11) |
| C10 | 0.092 (4) | 0.046 (2) | 0.064 (3) | 0.011 (2) | −0.016 (3) | 0.007 (2) |
| C11 | 0.087 (4) | 0.057 (3) | 0.078 (3) | 0.026 (2) | −0.033 (3) | −0.009 (2) |
| C1—O1 | 1.365 (5) | N1—H1B | 0.9 |
| C1—C2 | 1.389 (5) | C12—S1 | 1.749 (8) |
| C1—C6 | 1.392 (5) | C12—H12A | 0.96 |
| C2—C3 | 1.387 (7) | C12—H12B | 0.96 |
| C2—H2 | 0.93 | C12—H12C | 0.96 |
| C3—C4 | 1.360 (7) | C8—C10 | 1.483 (7) |
| C3—H3 | 0.93 | C8—C9 | 1.539 (4) |
| C4—C5 | 1.375 (7) | C8—H8 | 0.98 |
| C4—H4 | 0.93 | C9—O3 | 1.232 (4) |
| C5—C6 | 1.388 (6) | C9—O2 | 1.246 (5) |
| C5—H5 | 0.93 | O1—H1 | 0.82 |
| C6—C7 | 1.484 (6) | S1—C11 | 2.023 (7) |
| C7—N1 | 1.502 (5) | C10—C11 | 1.366 (8) |
| C7—H7A | 0.97 | C10—H10A | 0.97 |
| C7—H7B | 0.97 | C10—H10B | 0.97 |
| N1—C8 | 1.489 (4) | C11—H11A | 0.97 |
| N1—H1A | 0.9 | C11—H11B | 0.97 |
| O1—C1—C2 | 121.9 (3) | S1—C12—H12A | 109.5 |
| O1—C1—C6 | 118.1 (3) | S1—C12—H12B | 109.5 |
| C2—C1—C6 | 120.0 (3) | H12A—C12—H12B | 109.5 |
| C3—C2—C1 | 119.7 (4) | S1—C12—H12C | 109.5 |
| C3—C2—H2 | 120.1 | H12A—C12—H12C | 109.5 |
| C1—C2—H2 | 120.1 | H12B—C12—H12C | 109.5 |
| C4—C3—C2 | 120.3 (4) | C10—C8—N1 | 112.6 (3) |
| C4—C3—H3 | 119.8 | C10—C8—C9 | 115.0 (4) |
| C2—C3—H3 | 119.8 | N1—C8—C9 | 109.9 (3) |
| C3—C4—C5 | 120.0 (5) | C10—C8—H8 | 106.2 |
| C3—C4—H4 | 120 | N1—C8—H8 | 106.2 |
| C5—C4—H4 | 120 | C9—C8—H8 | 106.2 |
| C4—C5—C6 | 121.2 (4) | O3—C9—O2 | 127.9 (3) |
| C4—C5—H5 | 119.4 | O3—C9—C8 | 114.6 (3) |
| C6—C5—H5 | 119.4 | O2—C9—C8 | 117.5 (3) |
| C5—C6—C1 | 118.4 (4) | C1—O1—H1 | 109.5 |
| C5—C6—C7 | 121.2 (4) | C12—S1—C11 | 100.5 (3) |
| C1—C6—C7 | 120.4 (4) | C11—C10—C8 | 108.8 (4) |
| C6—C7—N1 | 113.2 (3) | C11—C10—H10A | 109.9 |
| C6—C7—H7A | 108.9 | C8—C10—H10A | 109.9 |
| N1—C7—H7A | 108.9 | C11—C10—H10B | 109.9 |
| C6—C7—H7B | 108.9 | C8—C10—H10B | 109.9 |
| N1—C7—H7B | 108.9 | H10A—C10—H10B | 108.3 |
| H7A—C7—H7B | 107.8 | C10—C11—S1 | 110.1 (4) |
| C8—N1—C7 | 110.7 (3) | C10—C11—H11A | 109.6 |
| C8—N1—H1A | 109.5 | S1—C11—H11A | 109.6 |
| C7—N1—H1A | 109.5 | C10—C11—H11B | 109.6 |
| C8—N1—H1B | 109.5 | S1—C11—H11B | 109.6 |
| C7—N1—H1B | 109.5 | H11A—C11—H11B | 108.1 |
| H1A—N1—H1B | 108.1 | ||
| O1—C1—C2—C3 | −177.5 (4) | C1—C6—C7—N1 | 91.8 (4) |
| C6—C1—C2—C3 | 3.7 (6) | C6—C7—N1—C8 | −169.9 (3) |
| C1—C2—C3—C4 | −1.2 (7) | C7—N1—C8—C10 | 156.6 (4) |
| C2—C3—C4—C5 | −2.7 (8) | C7—N1—C8—C9 | −73.8 (4) |
| C3—C4—C5—C6 | 4.3 (8) | C10—C8—C9—O3 | −74.6 (5) |
| C4—C5—C6—C1 | −1.8 (6) | N1—C8—C9—O3 | 157.1 (3) |
| C4—C5—C6—C7 | 179.0 (5) | C10—C8—C9—O2 | 105.0 (4) |
| O1—C1—C6—C5 | 178.9 (4) | N1—C8—C9—O2 | −23.4 (5) |
| C2—C1—C6—C5 | −2.2 (5) | N1—C8—C10—C11 | 71.0 (5) |
| O1—C1—C6—C7 | −1.8 (5) | C9—C8—C10—C11 | −55.9 (5) |
| C2—C1—C6—C7 | 177.1 (4) | C8—C10—C11—S1 | −177.7 (3) |
| C5—C6—C7—N1 | −89.0 (5) | C12—S1—C11—C10 | 100.9 (5) |
| H··· | ||||
| O1—H1···O2i | 0.82 | 1.83 | 2.641 (3) | 168 |
| N1—H1A···O3ii | 0.9 | 1.83 | 2.713 (3) | 166 |
| N1—H1B···O1iii | 0.9 | 2.14 | 2.916 (4) | 144 |
| N1—H1B···O2 | 0.9 | 2.35 | 2.687 (3) | 102 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1⋯O2i | 0.82 | 1.83 | 2.641 (3) | 168 |
| N1—H1 | 0.9 | 1.83 | 2.713 (3) | 166 |
| N1—H1 | 0.9 | 2.14 | 2.916 (4) | 144 |
| N1—H1 | 0.9 | 2.35 | 2.687 (3) | 102 |
Symmetry codes: (i) ; (ii) ; (iii) .