Literature DB >> 21754759

(S)-2-[(2-Hy-droxy-benz-yl)aza-nium-yl]-4-(methyl-sulfan-yl)butano-ate.

Giovanna Brancatelli, Giuseppe Bruno, Francesco Nicoló, Loredana Canfora, Giuseppe Ruisi.   

Abstract

The zwitterionic title compound, C(12)H(17)NO(3)S, is a reduced Schiff base derived from (S)-N-(2-hy-droxy-benzyl-idene)methio-nine. An intra-molecular inter-action between the N-H and carboxyl-ate groups forms a roughly planar (r.m.s. deviation = 0.1405 Å) five-membered ring containing the H(N), N, Cα, C(carboxyl-ate) and O atoms in a penta-gonal conformation. In the crystal, a supra-molecular triangle-shaped motif is generated by mol-ecules held together by O-H⋯O and N-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 21754759      PMCID: PMC3120446          DOI: 10.1107/S1600536811016564

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For transition metal complexes containing N-(2-hy­droxy­benz­yl)-α-amino acids as ligands, see: Bandyopadhyay et al. (2006 ▶); Beltrán et al. (2002 ▶); Ganguly et al. (2008 ▶); Koh et al. (1996 ▶); Martell (1989 ▶); Maurya (2003 ▶); Nefkens & Zwanenburg (1985 ▶); Ritsma (1975 ▶); Shongwe et al. (1999 ▶); Sreenivasulu & Vittal (2004 ▶); Wilson (1990 ▶).

Experimental

Crystal data

C12H17NO3S M = 255.33 Triclinic, a = 5.3221 (2) Å b = 5.8369 (2) Å c = 10.5564 (5) Å α = 98.200 (3)° β = 90.780 (3)° γ = 96.849 (3)° V = 322.10 (2) Å3 Z = 1 Mo Kα radiation μ = 0.25 mm−1 T = 296 K 0.53 × 0.44 × 0.16 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.679, T max = 0.746 7430 measured reflections 2324 independent reflections 1966 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.179 S = 1.07 2324 reflections 156 parameters 3 restraints H-atom parameters constrained Δρmax = 0.79 e Å−3 Δρmin = −0.41 e Å−3 Absolute structure: Assigned from the known absolute structure of the starting material; the Flack (1983 ▶) parameter is consistent with this assignment, 1119 Friedel pairs Flack parameter: 0.12 (19) Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811016564/fy2002sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811016564/fy2002Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811016564/fy2002Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H17NO3SZ = 1
Mr = 255.33F(000) = 136
Triclinic, P1Dx = 1.316 Mg m3
Hall symbol: P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.3221 (2) ÅCell parameters from 4292 reflections
b = 5.8369 (2) Åθ = 3.6–27.0°
c = 10.5564 (5) ŵ = 0.25 mm1
α = 98.200 (3)°T = 296 K
β = 90.780 (3)°Prysmatic, yellow
γ = 96.849 (3)°0.53 × 0.44 × 0.16 mm
V = 322.10 (2) Å3
Bruker APEXII CCD diffractometer1966 reflections with I > 2σ(I)
graphiteRint = 0.016
φ and ω scansθmax = 26°, θmin = 3.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −6→6
Tmin = 0.679, Tmax = 0.746k = −7→7
7430 measured reflectionsl = −13→13
2324 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.059H-atom parameters constrained
wR(F2) = 0.179w = 1/[σ2(Fo2) + (0.1065P)2 + 0.1553P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
2324 reflectionsΔρmax = 0.79 e Å3
156 parametersΔρmin = −0.41 e Å3
3 restraintsAbsolute structure: Assigned from the known absolute structure of the starting material; the Flack (1983) parameter is consistent with this assignment, 1119 Friedel-pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.12 (19)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1397 (7)0.8261 (5)0.6478 (4)0.0378 (8)
C20.1286 (8)1.0229 (6)0.7378 (4)0.0480 (10)
H20.00371.11920.73010.058*
C30.3045 (9)1.0752 (9)0.8391 (4)0.0595 (11)
H30.29931.20850.89840.071*
C40.4846 (11)0.9326 (10)0.8521 (5)0.0719 (14)
H40.60640.97190.9180.086*
C50.4866 (8)0.7305 (8)0.7677 (5)0.0592 (11)
H50.60340.62890.78070.071*
C60.3176 (7)0.6750 (6)0.6635 (4)0.0437 (9)
C70.3226 (7)0.4586 (6)0.5712 (5)0.0523 (11)
H7A0.15260.40570.53640.063*
H7B0.37540.33810.61640.063*
N10.4971 (5)0.4903 (4)0.4628 (3)0.0365 (7)
H1A0.46640.61750.42880.044*
H1B0.65860.51290.49270.044*
C120.982 (2)0.7692 (13)0.1065 (9)0.125 (3)
H12A0.83210.83840.09020.187*
H12B1.11620.82720.05530.187*
H12C1.03130.80830.19550.187*
C80.4605 (9)0.2821 (6)0.3620 (4)0.0528 (11)
H80.27750.2340.35330.063*
C90.5770 (7)0.0784 (5)0.4082 (4)0.0396 (8)
O1−0.0230 (5)0.7724 (4)0.5440 (3)0.0481 (7)
H1−0.07340.89180.52640.072*
O20.7473 (5)0.1274 (4)0.4933 (3)0.0542 (8)
O30.4885 (6)−0.1164 (4)0.3543 (3)0.0543 (8)
S10.9203 (4)0.4659 (3)0.0671 (2)0.1140 (8)
C100.5426 (11)0.3361 (8)0.2347 (5)0.0673 (14)
H10A0.48490.20560.16910.081*
H10B0.46980.4720.21490.081*
C110.8008 (11)0.3782 (9)0.2368 (6)0.0749 (15)
H11A0.87270.240.25350.09*
H11B0.85810.50410.30510.09*
U11U22U33U12U13U23
C10.0352 (18)0.0332 (17)0.047 (2)0.0050 (13)0.0058 (17)0.0120 (14)
C20.049 (2)0.0382 (19)0.060 (2)0.0137 (15)0.015 (2)0.0095 (17)
C30.064 (3)0.068 (3)0.045 (2)0.008 (2)0.007 (2)0.0004 (19)
C40.070 (3)0.091 (4)0.054 (3)0.013 (3)0.000 (3)0.005 (3)
C50.047 (2)0.071 (3)0.065 (3)0.013 (2)0.002 (2)0.025 (2)
C60.0355 (19)0.0368 (18)0.063 (2)0.0053 (14)0.0139 (19)0.0199 (16)
C70.037 (2)0.0255 (16)0.096 (3)0.0053 (13)0.014 (2)0.0138 (19)
N10.0462 (16)0.0128 (11)0.0509 (17)0.0053 (10)−0.0084 (14)0.0058 (10)
C120.183 (9)0.078 (4)0.121 (6)0.010 (5)0.017 (6)0.043 (4)
C80.079 (3)0.0190 (15)0.059 (2)0.0112 (16)−0.025 (2)0.0016 (15)
C90.052 (2)0.0163 (15)0.0514 (19)0.0096 (13)0.0019 (19)0.0044 (13)
O10.0499 (16)0.0286 (12)0.0668 (18)0.0114 (10)−0.0099 (15)0.0056 (11)
O20.0539 (16)0.0272 (12)0.082 (2)0.0108 (10)−0.0169 (16)0.0075 (12)
O30.081 (2)0.0182 (12)0.0622 (17)0.0056 (11)−0.0112 (16)0.0037 (11)
S10.1068 (14)0.1004 (13)0.1180 (14)−0.0026 (10)0.0483 (12)−0.0327 (11)
C100.092 (4)0.046 (2)0.064 (3)0.011 (2)−0.016 (3)0.007 (2)
C110.087 (4)0.057 (3)0.078 (3)0.026 (2)−0.033 (3)−0.009 (2)
C1—O11.365 (5)N1—H1B0.9
C1—C21.389 (5)C12—S11.749 (8)
C1—C61.392 (5)C12—H12A0.96
C2—C31.387 (7)C12—H12B0.96
C2—H20.93C12—H12C0.96
C3—C41.360 (7)C8—C101.483 (7)
C3—H30.93C8—C91.539 (4)
C4—C51.375 (7)C8—H80.98
C4—H40.93C9—O31.232 (4)
C5—C61.388 (6)C9—O21.246 (5)
C5—H50.93O1—H10.82
C6—C71.484 (6)S1—C112.023 (7)
C7—N11.502 (5)C10—C111.366 (8)
C7—H7A0.97C10—H10A0.97
C7—H7B0.97C10—H10B0.97
N1—C81.489 (4)C11—H11A0.97
N1—H1A0.9C11—H11B0.97
O1—C1—C2121.9 (3)S1—C12—H12A109.5
O1—C1—C6118.1 (3)S1—C12—H12B109.5
C2—C1—C6120.0 (3)H12A—C12—H12B109.5
C3—C2—C1119.7 (4)S1—C12—H12C109.5
C3—C2—H2120.1H12A—C12—H12C109.5
C1—C2—H2120.1H12B—C12—H12C109.5
C4—C3—C2120.3 (4)C10—C8—N1112.6 (3)
C4—C3—H3119.8C10—C8—C9115.0 (4)
C2—C3—H3119.8N1—C8—C9109.9 (3)
C3—C4—C5120.0 (5)C10—C8—H8106.2
C3—C4—H4120N1—C8—H8106.2
C5—C4—H4120C9—C8—H8106.2
C4—C5—C6121.2 (4)O3—C9—O2127.9 (3)
C4—C5—H5119.4O3—C9—C8114.6 (3)
C6—C5—H5119.4O2—C9—C8117.5 (3)
C5—C6—C1118.4 (4)C1—O1—H1109.5
C5—C6—C7121.2 (4)C12—S1—C11100.5 (3)
C1—C6—C7120.4 (4)C11—C10—C8108.8 (4)
C6—C7—N1113.2 (3)C11—C10—H10A109.9
C6—C7—H7A108.9C8—C10—H10A109.9
N1—C7—H7A108.9C11—C10—H10B109.9
C6—C7—H7B108.9C8—C10—H10B109.9
N1—C7—H7B108.9H10A—C10—H10B108.3
H7A—C7—H7B107.8C10—C11—S1110.1 (4)
C8—N1—C7110.7 (3)C10—C11—H11A109.6
C8—N1—H1A109.5S1—C11—H11A109.6
C7—N1—H1A109.5C10—C11—H11B109.6
C8—N1—H1B109.5S1—C11—H11B109.6
C7—N1—H1B109.5H11A—C11—H11B108.1
H1A—N1—H1B108.1
O1—C1—C2—C3−177.5 (4)C1—C6—C7—N191.8 (4)
C6—C1—C2—C33.7 (6)C6—C7—N1—C8−169.9 (3)
C1—C2—C3—C4−1.2 (7)C7—N1—C8—C10156.6 (4)
C2—C3—C4—C5−2.7 (8)C7—N1—C8—C9−73.8 (4)
C3—C4—C5—C64.3 (8)C10—C8—C9—O3−74.6 (5)
C4—C5—C6—C1−1.8 (6)N1—C8—C9—O3157.1 (3)
C4—C5—C6—C7179.0 (5)C10—C8—C9—O2105.0 (4)
O1—C1—C6—C5178.9 (4)N1—C8—C9—O2−23.4 (5)
C2—C1—C6—C5−2.2 (5)N1—C8—C10—C1171.0 (5)
O1—C1—C6—C7−1.8 (5)C9—C8—C10—C11−55.9 (5)
C2—C1—C6—C7177.1 (4)C8—C10—C11—S1−177.7 (3)
C5—C6—C7—N1−89.0 (5)C12—S1—C11—C10100.9 (5)
D—H···AD—HH···AD···AD—H···A
O1—H1···O2i0.821.832.641 (3)168
N1—H1A···O3ii0.91.832.713 (3)166
N1—H1B···O1iii0.92.142.916 (4)144
N1—H1B···O20.92.352.687 (3)102
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O2i0.821.832.641 (3)168
N1—H1A⋯O3ii0.91.832.713 (3)166
N1—H1B⋯O1iii0.92.142.916 (4)144
N1—H1B⋯O20.92.352.687 (3)102

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

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3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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