| Literature DB >> 21754753 |
Abstract
The mol-ecule of the title compound, C(6)H(7)N(3)O(2), a derivative of o-phenyl-enediamine, nearly shows non-crystallographic C(s) symmetry. C-C-C angles span the range 116.25 (11)-122.35 (11)°. In the crystal, inter-molecular N-H⋯O and N-H⋯N hydrogen bonds connect mol-ecules into undulating sheets perpendicular to the crystallographic a axis. A weak intra-molecular N-H⋯O hydrogen bond is also observed. No π-stacking is observed in the crystal structure.Entities:
Year: 2011 PMID: 21754753 PMCID: PMC3120524 DOI: 10.1107/S1600536811016825
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H7N3O2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3115 reflections |
| θ = 2.5–28.2° | |
| µ = 0.12 mm−1 | |
| β = 126.208 (2)° | Rod, red |
| 0.55 × 0.24 × 0.11 mm | |
| Bruker APEXII CCD diffractometer | 1262 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 28.3°, θmin = 3.1° |
| φ and ω scans | |
| 6477 measured reflections | |
| 1605 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1605 reflections | (Δ/σ)max < 0.001 |
| 113 parameters | Δρmax = 0.30 e Å−3 |
| 6 restraints | Δρmin = −0.17 e Å−3 |
| O1 | 0.13915 (10) | 0.7321 (4) | 0.03335 (7) | 0.0524 (3) | |
| O2 | 0.30745 (12) | 1.0010 (4) | 0.07783 (10) | 0.0687 (4) | |
| N1 | 0.13706 (12) | 0.8731 (4) | 0.34249 (9) | 0.0419 (3) | |
| H711 | 0.1778 (16) | 0.888 (5) | 0.4092 (10) | 0.063* | |
| H712 | 0.1066 (16) | 0.649 (4) | 0.3250 (14) | 0.063* | |
| N2 | 0.07013 (10) | 0.7189 (3) | 0.15331 (8) | 0.0346 (3) | |
| H721 | 0.0209 (14) | 0.662 (5) | 0.1708 (12) | 0.052* | |
| H722 | 0.0458 (15) | 0.663 (5) | 0.0919 (10) | 0.052* | |
| N3 | 0.23536 (11) | 0.9000 (3) | 0.09715 (8) | 0.0382 (3) | |
| C1 | 0.22068 (11) | 0.9559 (3) | 0.31843 (9) | 0.0289 (3) | |
| C2 | 0.18152 (10) | 0.8773 (3) | 0.21809 (8) | 0.0241 (3) | |
| C3 | 0.26459 (10) | 0.9743 (3) | 0.19499 (8) | 0.0268 (3) | |
| C4 | 0.37907 (11) | 1.1429 (3) | 0.26574 (11) | 0.0349 (3) | |
| H4 | 0.4329 | 1.2060 | 0.2477 | 0.042* | |
| C5 | 0.41227 (12) | 1.2152 (4) | 0.36057 (10) | 0.0397 (3) | |
| H5 | 0.4895 | 1.3289 | 0.4091 | 0.048* | |
| C6 | 0.33235 (12) | 1.1214 (4) | 0.38622 (9) | 0.0374 (3) | |
| H6 | 0.3561 | 1.1739 | 0.4524 | 0.045* |
| O1 | 0.0500 (6) | 0.0787 (8) | 0.0285 (5) | −0.0038 (6) | 0.0231 (5) | −0.0108 (5) |
| O2 | 0.0701 (8) | 0.1063 (11) | 0.0630 (7) | −0.0052 (7) | 0.0575 (7) | 0.0026 (7) |
| N1 | 0.0512 (7) | 0.0525 (8) | 0.0371 (6) | 0.0146 (6) | 0.0344 (6) | 0.0103 (6) |
| N2 | 0.0294 (5) | 0.0433 (7) | 0.0331 (5) | −0.0028 (4) | 0.0195 (5) | −0.0030 (5) |
| N3 | 0.0430 (6) | 0.0493 (7) | 0.0343 (6) | 0.0089 (5) | 0.0294 (5) | 0.0054 (5) |
| C1 | 0.0353 (6) | 0.0286 (6) | 0.0263 (5) | 0.0121 (5) | 0.0201 (5) | 0.0066 (5) |
| C2 | 0.0261 (5) | 0.0237 (5) | 0.0244 (5) | 0.0061 (4) | 0.0160 (4) | 0.0031 (4) |
| C3 | 0.0299 (6) | 0.0276 (6) | 0.0264 (5) | 0.0052 (4) | 0.0185 (5) | 0.0035 (4) |
| C4 | 0.0300 (6) | 0.0283 (6) | 0.0472 (7) | 0.0024 (5) | 0.0233 (6) | 0.0037 (5) |
| C5 | 0.0305 (6) | 0.0294 (7) | 0.0404 (7) | 0.0011 (5) | 0.0106 (5) | −0.0050 (5) |
| C6 | 0.0433 (7) | 0.0331 (7) | 0.0249 (6) | 0.0114 (5) | 0.0140 (5) | −0.0011 (5) |
| O1—N3 | 1.2420 (16) | C1—C6 | 1.3681 (18) |
| O2—N3 | 1.2318 (15) | C1—C2 | 1.4268 (15) |
| N1—C1 | 1.4142 (16) | C2—C3 | 1.4088 (15) |
| N1—H711 | 0.887 (12) | C3—C4 | 1.4041 (17) |
| N1—H712 | 0.903 (12) | C4—C5 | 1.364 (2) |
| N2—C2 | 1.3462 (15) | C4—H4 | 0.9500 |
| N2—H721 | 0.880 (12) | C5—C6 | 1.397 (2) |
| N2—H722 | 0.878 (12) | C5—H5 | 0.9500 |
| N3—C3 | 1.4313 (15) | C6—H6 | 0.9500 |
| C1—N1—H711 | 108.5 (12) | C3—C2—C1 | 116.25 (11) |
| C1—N1—H712 | 113.3 (12) | C4—C3—C2 | 122.35 (11) |
| H711—N1—H712 | 106.4 (15) | C4—C3—N3 | 117.01 (11) |
| C2—N2—H721 | 122.3 (11) | C2—C3—N3 | 120.64 (11) |
| C2—N2—H722 | 119.6 (11) | C5—C4—C3 | 119.38 (12) |
| H721—N2—H722 | 118.0 (14) | C5—C4—H4 | 120.3 |
| O2—N3—O1 | 120.77 (12) | C3—C4—H4 | 120.3 |
| O2—N3—C3 | 119.13 (12) | C4—C5—C6 | 119.81 (12) |
| O1—N3—C3 | 120.09 (10) | C4—C5—H5 | 120.1 |
| C6—C1—N1 | 121.95 (11) | C6—C5—H5 | 120.1 |
| C6—C1—C2 | 120.56 (11) | C1—C6—C5 | 121.65 (12) |
| N1—C1—C2 | 117.41 (11) | C1—C6—H6 | 119.2 |
| N2—C2—C3 | 125.10 (10) | C5—C6—H6 | 119.2 |
| N2—C2—C1 | 118.65 (10) | ||
| C6—C1—C2—N2 | −179.04 (11) | O1—N3—C3—C4 | 175.60 (12) |
| N1—C1—C2—N2 | −2.26 (17) | O2—N3—C3—C2 | 177.07 (12) |
| C6—C1—C2—C3 | 0.96 (17) | O1—N3—C3—C2 | −3.77 (19) |
| N1—C1—C2—C3 | 177.74 (10) | C2—C3—C4—C5 | 0.29 (19) |
| N2—C2—C3—C4 | 179.27 (11) | N3—C3—C4—C5 | −179.07 (11) |
| C1—C2—C3—C4 | −0.73 (17) | C3—C4—C5—C6 | −0.04 (19) |
| N2—C2—C3—N3 | −1.39 (19) | N1—C1—C6—C5 | −177.40 (12) |
| C1—C2—C3—N3 | 178.60 (10) | C2—C1—C6—C5 | −0.78 (19) |
| O2—N3—C3—C4 | −3.56 (19) | C4—C5—C6—C1 | 0.3 (2) |
| H··· | ||||
| N1—H711···O1i | 0.89 (1) | 2.41 (2) | 3.1257 (14) | 138.(2) |
| N2—H721···N1ii | 0.88 (1) | 2.26 (1) | 3.0800 (16) | 156.(2) |
| N2—H722···O1 | 0.88 (1) | 1.98 (1) | 2.6084 (14) | 127.(1) |
| N2—H722···O1iii | 0.88 (1) | 2.55 (2) | 3.1416 (16) | 126.(1) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H711⋯O1i | 0.89 (1) | 2.41 (2) | 3.1257 (14) | 138 (2) |
| N2—H721⋯N1ii | 0.88 (1) | 2.26 (1) | 3.0800 (16) | 156 (2) |
| N2—H722⋯O1 | 0.88 (1) | 1.98 (1) | 2.6084 (14) | 127 (1) |
| N2—H722⋯O1iii | 0.88 (1) | 2.55 (2) | 3.1416 (16) | 126 (1) |
Symmetry codes: (i) ; (ii) ; (iii) .