Literature DB >> 21754753

3-Nitro-benzene-1,2-diamine.

Richard Betz1, Thomas Gerber.   

Abstract

The mol-ecule of the title compound, C(6)H(7)N(3)O(2), a derivative of o-phenyl-enediamine, nearly shows non-crystallographic C(s) symmetry. C-C-C angles span the range 116.25 (11)-122.35 (11)°. In the crystal, inter-molecular N-H⋯O and N-H⋯N hydrogen bonds connect mol-ecules into undulating sheets perpendicular to the crystallographic a axis. A weak intra-molecular N-H⋯O hydrogen bond is also observed. No π-stacking is observed in the crystal structure.

Entities:  

Year:  2011        PMID: 21754753      PMCID: PMC3120524          DOI: 10.1107/S1600536811016825

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of 1,2-diamino­benzene, see: Stalhandske (1981 ▶); Czapik & Gdaniec (2010 ▶). For graph-set analysis of hydrogen bonds, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶). For the use of chelate ligands in coordination chemistry, see: Gade (1998 ▶). For the crystal structures of coordination compounds with rhenium in different oxidation states applying (mixed) oxygen-, nitro­gen- and/or sulfur-containing ligands, see: Chiozzone et al. (1999 ▶); Videira et al. (2009 ▶); Edwards et al. (1998 ▶); Marti et al. (2005 ▶); Babich et al. (2001 ▶).

Experimental

Crystal data

C6H7N3O2 M = 153.15 Monoclinic, a = 13.2854 (5) Å b = 3.7504 (1) Å c = 16.3309 (6) Å β = 126.208 (2)° V = 656.55 (4) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 200 K 0.55 × 0.24 × 0.11 mm

Data collection

Bruker APEXII CCD diffractometer 6477 measured reflections 1605 independent reflections 1262 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.115 S = 1.05 1605 reflections 113 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811016825/sj5135sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811016825/sj5135Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811016825/sj5135Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H7N3O2F(000) = 320
Mr = 153.15Dx = 1.549 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3115 reflections
a = 13.2854 (5) Åθ = 2.5–28.2°
b = 3.7504 (1) ŵ = 0.12 mm1
c = 16.3309 (6) ÅT = 200 K
β = 126.208 (2)°Rod, red
V = 656.55 (4) Å30.55 × 0.24 × 0.11 mm
Z = 4
Bruker APEXII CCD diffractometer1262 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.043
graphiteθmax = 28.3°, θmin = 3.1°
φ and ω scansh = −17→17
6477 measured reflectionsk = −4→4
1605 independent reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.115H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.055P)2 + 0.1822P] where P = (Fo2 + 2Fc2)/3
1605 reflections(Δ/σ)max < 0.001
113 parametersΔρmax = 0.30 e Å3
6 restraintsΔρmin = −0.17 e Å3
xyzUiso*/Ueq
O10.13915 (10)0.7321 (4)0.03335 (7)0.0524 (3)
O20.30745 (12)1.0010 (4)0.07783 (10)0.0687 (4)
N10.13706 (12)0.8731 (4)0.34249 (9)0.0419 (3)
H7110.1778 (16)0.888 (5)0.4092 (10)0.063*
H7120.1066 (16)0.649 (4)0.3250 (14)0.063*
N20.07013 (10)0.7189 (3)0.15331 (8)0.0346 (3)
H7210.0209 (14)0.662 (5)0.1708 (12)0.052*
H7220.0458 (15)0.663 (5)0.0919 (10)0.052*
N30.23536 (11)0.9000 (3)0.09715 (8)0.0382 (3)
C10.22068 (11)0.9559 (3)0.31843 (9)0.0289 (3)
C20.18152 (10)0.8773 (3)0.21809 (8)0.0241 (3)
C30.26459 (10)0.9743 (3)0.19499 (8)0.0268 (3)
C40.37907 (11)1.1429 (3)0.26574 (11)0.0349 (3)
H40.43291.20600.24770.042*
C50.41227 (12)1.2152 (4)0.36057 (10)0.0397 (3)
H50.48951.32890.40910.048*
C60.33235 (12)1.1214 (4)0.38622 (9)0.0374 (3)
H60.35611.17390.45240.045*
U11U22U33U12U13U23
O10.0500 (6)0.0787 (8)0.0285 (5)−0.0038 (6)0.0231 (5)−0.0108 (5)
O20.0701 (8)0.1063 (11)0.0630 (7)−0.0052 (7)0.0575 (7)0.0026 (7)
N10.0512 (7)0.0525 (8)0.0371 (6)0.0146 (6)0.0344 (6)0.0103 (6)
N20.0294 (5)0.0433 (7)0.0331 (5)−0.0028 (4)0.0195 (5)−0.0030 (5)
N30.0430 (6)0.0493 (7)0.0343 (6)0.0089 (5)0.0294 (5)0.0054 (5)
C10.0353 (6)0.0286 (6)0.0263 (5)0.0121 (5)0.0201 (5)0.0066 (5)
C20.0261 (5)0.0237 (5)0.0244 (5)0.0061 (4)0.0160 (4)0.0031 (4)
C30.0299 (6)0.0276 (6)0.0264 (5)0.0052 (4)0.0185 (5)0.0035 (4)
C40.0300 (6)0.0283 (6)0.0472 (7)0.0024 (5)0.0233 (6)0.0037 (5)
C50.0305 (6)0.0294 (7)0.0404 (7)0.0011 (5)0.0106 (5)−0.0050 (5)
C60.0433 (7)0.0331 (7)0.0249 (6)0.0114 (5)0.0140 (5)−0.0011 (5)
O1—N31.2420 (16)C1—C61.3681 (18)
O2—N31.2318 (15)C1—C21.4268 (15)
N1—C11.4142 (16)C2—C31.4088 (15)
N1—H7110.887 (12)C3—C41.4041 (17)
N1—H7120.903 (12)C4—C51.364 (2)
N2—C21.3462 (15)C4—H40.9500
N2—H7210.880 (12)C5—C61.397 (2)
N2—H7220.878 (12)C5—H50.9500
N3—C31.4313 (15)C6—H60.9500
C1—N1—H711108.5 (12)C3—C2—C1116.25 (11)
C1—N1—H712113.3 (12)C4—C3—C2122.35 (11)
H711—N1—H712106.4 (15)C4—C3—N3117.01 (11)
C2—N2—H721122.3 (11)C2—C3—N3120.64 (11)
C2—N2—H722119.6 (11)C5—C4—C3119.38 (12)
H721—N2—H722118.0 (14)C5—C4—H4120.3
O2—N3—O1120.77 (12)C3—C4—H4120.3
O2—N3—C3119.13 (12)C4—C5—C6119.81 (12)
O1—N3—C3120.09 (10)C4—C5—H5120.1
C6—C1—N1121.95 (11)C6—C5—H5120.1
C6—C1—C2120.56 (11)C1—C6—C5121.65 (12)
N1—C1—C2117.41 (11)C1—C6—H6119.2
N2—C2—C3125.10 (10)C5—C6—H6119.2
N2—C2—C1118.65 (10)
C6—C1—C2—N2−179.04 (11)O1—N3—C3—C4175.60 (12)
N1—C1—C2—N2−2.26 (17)O2—N3—C3—C2177.07 (12)
C6—C1—C2—C30.96 (17)O1—N3—C3—C2−3.77 (19)
N1—C1—C2—C3177.74 (10)C2—C3—C4—C50.29 (19)
N2—C2—C3—C4179.27 (11)N3—C3—C4—C5−179.07 (11)
C1—C2—C3—C4−0.73 (17)C3—C4—C5—C6−0.04 (19)
N2—C2—C3—N3−1.39 (19)N1—C1—C6—C5−177.40 (12)
C1—C2—C3—N3178.60 (10)C2—C1—C6—C5−0.78 (19)
O2—N3—C3—C4−3.56 (19)C4—C5—C6—C10.3 (2)
D—H···AD—HH···AD···AD—H···A
N1—H711···O1i0.89 (1)2.41 (2)3.1257 (14)138.(2)
N2—H721···N1ii0.88 (1)2.26 (1)3.0800 (16)156.(2)
N2—H722···O10.88 (1)1.98 (1)2.6084 (14)127.(1)
N2—H722···O1iii0.88 (1)2.55 (2)3.1416 (16)126.(1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H711⋯O1i0.89 (1)2.41 (2)3.1257 (14)138 (2)
N2—H721⋯N1ii0.88 (1)2.26 (1)3.0800 (16)156 (2)
N2—H722⋯O10.88 (1)1.98 (1)2.6084 (14)127 (1)
N2—H722⋯O1iii0.88 (1)2.55 (2)3.1416 (16)126 (1)

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  A new polymorph of benzene-1,2-diamine: isomorphism with 2-aminophenol and two-dimensional isostructurality of polymorphs.

Authors:  Agnieszka Czapik; Maria Gdaniec
Journal:  Acta Crystallogr C       Date:  2010-03-09       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

4.  Comparative studies of substitution reactions of rhenium(I) dicarbonyl-nitrosyl and tricarbonyl complexes in aqueous media.

Authors:  Niklaus Marti; Bernhard Spingler; Frank Breher; Roger Schibli
Journal:  Inorg Chem       Date:  2005-08-22       Impact factor: 5.165

5.  Synthesis, Crystal Structure, and Magnetic Properties of Tetraphenylarsonium Tetrachloro(oxalato)rhenate(IV) and Bis(2,2'-bipyridine)tetrachloro(&mgr;-oxalato)copper(II)rhenium(IV).

Authors:  Raúl Chiozzone; Ricardo González; Carlos Kremer; Giovanni De Munno; Joan Cano; Francesc Lloret; Miguel Julve; Juan Faus
Journal:  Inorg Chem       Date:  1999-10-18       Impact factor: 5.165

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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