Literature DB >> 21754744

1-Benzyl-3,5-bis-(4-methyl-benzyl-idene)-4-oxopiperidin-1-ium chloride acetic acid monosolvate.

Ju-Feng Sun1, Juan Xing, Jing-Tian Han.   

Abstract

In the title solvated mol-ecular salt, C(28)H(28)NO(+)·Cl(-)·C(2)H(4)O(2), the central piperidinium ring of the cation adopts an envelope conformation with the N atom displaced by 0.798 (2) Å from the mean plane of the five C atoms. In the crystal, the components are linked by N-H⋯Cl and O-H⋯Cl hydrogen bonds into trimeric assemblies. C-H⋯Cl and C-H⋯π inter-actions further consolidate the packing.

Entities:  

Year:  2011        PMID: 21754744      PMCID: PMC3120477          DOI: 10.1107/S1600536811016138

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the use of piperidone derivatives in medicine, see: Dimmock et al. (2003 ▶); El-Subbagh et al. (2000 ▶); Pati et al. (2009 ▶); Das et al. (2009 ▶, 2010 ▶). For the synthesis, see: Pati et al. (2009 ▶).

Experimental

Crystal data

C28H28NOCl−·C2H4O2 M = 490.02 Triclinic, a = 7.1488 (5) Å b = 11.2799 (7) Å c = 17.6271 (11) Å α = 103.181 (6)° β = 98.087 (6)° γ = 92.407 (6)° V = 1366.16 (16) Å3 Z = 2 Mo Kα radiation μ = 0.17 mm−1 T = 288 K 0.61 × 0.54 × 0.52 mm

Data collection

Oxford Diffraction Xcalibur Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.804, T max = 1.000 16829 measured reflections 5549 independent reflections 3895 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.158 S = 1.03 5549 reflections 320 parameters 39 restraints H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.29 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811016138/hb5860sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811016138/hb5860Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811016138/hb5860Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C28H28NO+·Cl·C2H4O2Z = 2
Mr = 490.02F(000) = 520
Triclinic, P1Dx = 1.191 Mg m3
a = 7.1488 (5) ÅMo Kα radiation, λ = 0.7107 Å
b = 11.2799 (7) ÅCell parameters from 6467 reflections
c = 17.6271 (11) Åθ = 3.3–28.9°
α = 103.181 (6)°µ = 0.17 mm1
β = 98.087 (6)°T = 288 K
γ = 92.407 (6)°Block, yellow
V = 1366.16 (16) Å30.61 × 0.54 × 0.52 mm
Oxford Diffraction Xcalibur Eos Gemini diffractometer5549 independent reflections
Radiation source: Enhance (Mo) X-ray Source3895 reflections with I > 2σ(I)
graphiteRint = 0.029
Detector resolution: 16.0355 pixels mm-1θmax = 26.4°, θmin = 3.3°
ω scansh = −8→8
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −14→14
Tmin = 0.804, Tmax = 1.000l = −22→22
16829 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.158H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0749P)2 + 0.3122P] where P = (Fo2 + 2Fc2)/3
5549 reflections(Δ/σ)max < 0.001
320 parametersΔρmax = 0.30 e Å3
39 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.08804 (8)0.75303 (7)0.28289 (4)0.0748 (3)
N10.5035 (2)0.71709 (14)0.26944 (10)0.0393 (4)
H10.38390.73420.27810.047*
C90.3879 (3)0.65470 (19)0.12495 (12)0.0419 (5)
O10.2783 (2)0.82076 (15)0.07466 (10)0.0620 (5)
C130.3747 (3)0.7863 (2)0.12748 (13)0.0449 (5)
C120.4888 (3)0.87647 (18)0.19513 (12)0.0416 (5)
C110.6027 (3)0.82996 (18)0.25930 (12)0.0426 (5)
H11A0.72710.81230.24570.051*
H11B0.61920.89200.30840.051*
C100.4892 (3)0.61825 (18)0.19628 (12)0.0437 (5)
H10A0.42180.54620.20350.052*
H10B0.61560.59730.18710.052*
C50.3050 (3)0.4412 (2)0.03506 (12)0.0469 (5)
C80.3123 (3)0.5739 (2)0.05816 (13)0.0468 (5)
H80.25360.60940.01930.056*
C140.4858 (3)0.9947 (2)0.19560 (13)0.0498 (5)
H140.39961.01320.15610.060*
C40.1820 (3)0.3827 (2)−0.03376 (13)0.0538 (6)
H40.11320.4299−0.06290.065*
C220.5994 (3)0.6717 (2)0.33817 (12)0.0502 (5)
H22A0.53010.59700.34020.060*
H22B0.72610.65180.32880.060*
C230.6138 (3)0.7602 (2)0.41694 (13)0.0522 (6)
C60.4122 (3)0.3656 (2)0.07377 (14)0.0543 (6)
H60.50100.40040.11800.065*
C150.5982 (4)1.0990 (2)0.24915 (13)0.0557 (6)
C20.2600 (3)0.1835 (2)−0.01829 (14)0.0571 (6)
C280.7816 (4)0.8286 (3)0.45080 (15)0.0677 (7)
H280.88540.82180.42400.081*
C30.1601 (3)0.2573 (2)−0.05945 (14)0.0591 (6)
H3A0.07670.2218−0.10520.071*
C70.3887 (4)0.2404 (2)0.04754 (14)0.0583 (6)
H70.46150.19270.07490.070*
C240.4610 (4)0.7721 (3)0.45812 (16)0.0724 (8)
H240.34590.72790.43600.087*
C200.7861 (4)1.0932 (2)0.28108 (15)0.0649 (7)
H200.84301.01980.26990.078*
C190.8889 (5)1.1962 (3)0.32947 (17)0.0867 (9)
H191.01471.19170.35020.104*
C10.2305 (5)0.0466 (2)−0.04400 (18)0.0793 (8)
H1A0.12020.0239−0.08360.119*
H1B0.21320.01400.00050.119*
H1C0.33940.0145−0.06530.119*
C160.5197 (5)1.2108 (2)0.26610 (17)0.0773 (8)
H160.39621.21740.24340.093*
C270.7962 (5)0.9078 (3)0.52492 (17)0.0869 (10)
H270.90940.95420.54720.104*
C180.8059 (6)1.3060 (3)0.34730 (18)0.0944 (10)
C250.4813 (6)0.8509 (4)0.53299 (19)0.0936 (11)
H250.38000.85730.56110.112*
C260.6465 (7)0.9179 (3)0.56492 (18)0.0940 (11)
H260.65760.97100.61440.113*
C170.6200 (6)1.3104 (3)0.3151 (2)0.0997 (11)
H170.56201.38310.32730.120*
O20.1938 (3)0.4138 (2)0.24132 (14)0.0879 (6)
O3−0.0627 (3)0.4934 (2)0.19550 (14)0.0900 (7)
H3−0.01030.55530.22650.135*
C290.0411 (4)0.4005 (3)0.19967 (18)0.0713 (8)
C30−0.0443 (5)0.2837 (3)0.1471 (2)0.0894 (9)
H30A−0.05680.29010.09320.134*
H30B−0.16710.26560.15960.134*
H30C0.03550.21950.15410.134*
C210.9236 (8)1.4166 (4)0.4024 (3)0.1380 (15)
H21A1.05081.39540.41560.207*
H21B0.86851.44100.44960.207*
H21C0.92551.48280.37650.207*
U11U22U33U12U13U23
Cl10.0409 (4)0.1028 (6)0.0838 (5)0.0246 (3)0.0192 (3)0.0190 (4)
N10.0316 (8)0.0463 (9)0.0458 (9)0.0111 (7)0.0108 (7)0.0182 (7)
C90.0290 (10)0.0530 (12)0.0471 (12)0.0065 (8)0.0079 (8)0.0170 (9)
O10.0554 (10)0.0650 (10)0.0671 (11)0.0056 (8)−0.0080 (8)0.0292 (8)
C130.0328 (10)0.0563 (12)0.0514 (12)0.0071 (9)0.0078 (9)0.0233 (10)
C120.0329 (10)0.0491 (11)0.0488 (12)0.0089 (8)0.0123 (8)0.0193 (9)
C110.0359 (11)0.0452 (11)0.0491 (12)0.0067 (8)0.0065 (9)0.0155 (9)
C100.0402 (11)0.0442 (11)0.0488 (12)0.0089 (9)0.0074 (9)0.0138 (9)
C50.0365 (11)0.0590 (13)0.0461 (12)0.0046 (9)0.0107 (9)0.0114 (10)
C80.0339 (11)0.0616 (13)0.0488 (12)0.0076 (9)0.0064 (9)0.0207 (10)
C140.0503 (13)0.0547 (13)0.0508 (12)0.0127 (10)0.0088 (10)0.0232 (10)
C40.0383 (12)0.0723 (16)0.0496 (13)0.0066 (11)0.0051 (9)0.0123 (11)
C220.0541 (13)0.0519 (12)0.0509 (13)0.0162 (10)0.0073 (10)0.0235 (10)
C230.0595 (14)0.0587 (13)0.0469 (12)0.0178 (11)0.0111 (10)0.0258 (10)
C60.0517 (14)0.0603 (14)0.0477 (12)0.0081 (11)0.0014 (10)0.0093 (10)
C150.0758 (16)0.0502 (12)0.0460 (12)0.0097 (11)0.0086 (11)0.0211 (10)
C20.0551 (14)0.0621 (14)0.0543 (14)−0.0026 (11)0.0239 (11)0.0060 (11)
C280.0702 (18)0.0816 (18)0.0539 (15)0.0056 (14)0.0070 (13)0.0229 (13)
C30.0421 (13)0.0734 (16)0.0532 (13)−0.0062 (11)0.0077 (10)−0.0008 (12)
C70.0685 (16)0.0557 (14)0.0511 (13)0.0095 (12)0.0099 (11)0.0123 (11)
C240.0694 (18)0.098 (2)0.0609 (16)0.0197 (15)0.0209 (13)0.0324 (15)
C200.0783 (17)0.0536 (13)0.0644 (15)−0.0023 (12)0.0025 (13)0.0235 (11)
C190.107 (2)0.0785 (17)0.0695 (17)−0.0101 (15)−0.0170 (15)0.0289 (14)
C10.095 (2)0.0636 (17)0.0759 (18)−0.0121 (15)0.0294 (16)0.0030 (14)
C160.114 (2)0.0523 (14)0.0656 (16)0.0224 (14)0.0013 (15)0.0184 (12)
C270.113 (3)0.086 (2)0.0567 (17)−0.0024 (19)−0.0056 (17)0.0195 (15)
C180.150 (3)0.0600 (15)0.0632 (17)−0.0108 (17)−0.0071 (18)0.0127 (13)
C250.112 (3)0.125 (3)0.0609 (18)0.046 (2)0.0394 (18)0.0355 (19)
C260.144 (4)0.092 (2)0.0497 (17)0.034 (2)0.017 (2)0.0177 (15)
C170.149 (3)0.0584 (16)0.085 (2)0.0182 (17)−0.004 (2)0.0138 (14)
O20.0612 (13)0.1007 (15)0.1090 (16)0.0147 (11)0.0039 (12)0.0436 (13)
O30.0621 (13)0.1004 (16)0.1116 (18)0.0188 (12)−0.0014 (11)0.0401 (14)
C290.0529 (16)0.095 (2)0.0828 (19)0.0131 (15)0.0192 (14)0.0479 (17)
C300.085 (2)0.092 (2)0.096 (2)−0.0020 (18)0.0156 (18)0.0338 (19)
C210.181 (3)0.100 (2)0.105 (2)−0.017 (2)−0.024 (2)0.001 (2)
N1—H10.9100C2—C11.504 (4)
N1—C111.490 (3)C28—H280.9300
N1—C101.488 (3)C28—C271.392 (4)
N1—C221.510 (3)C3—H3A0.9300
C9—C131.482 (3)C7—H70.9300
C9—C101.510 (3)C24—H240.9300
C9—C81.341 (3)C24—C251.398 (4)
O1—C131.225 (2)C20—H200.9300
C13—C121.492 (3)C20—C191.385 (4)
C12—C111.505 (3)C19—H190.9300
C12—C141.333 (3)C19—C181.386 (5)
C11—H11A0.9700C1—H1A0.9600
C11—H11B0.9700C1—H1B0.9600
C10—H10A0.9700C1—H1C0.9600
C10—H10B0.9700C16—H160.9300
C5—C81.456 (3)C16—C171.356 (4)
C5—C41.402 (3)C27—H270.9300
C5—C61.397 (3)C27—C261.357 (5)
C8—H80.9300C18—C171.377 (5)
C14—H140.9300C18—C211.528 (5)
C14—C151.457 (3)C25—H250.9300
C4—H40.9300C25—C261.352 (5)
C4—C31.378 (3)C26—H260.9300
C22—H22A0.9700C17—H170.9300
C22—H22B0.9700O2—C291.210 (3)
C22—C231.501 (3)O3—H30.8200
C23—C281.379 (4)O3—C291.320 (3)
C23—C241.388 (3)C29—C301.478 (4)
C6—H60.9300C30—H30A0.9600
C6—C71.377 (3)C30—H30B0.9600
C15—C201.392 (4)C30—H30C0.9600
C15—C161.389 (3)C21—H21A0.9600
C2—C31.382 (4)C21—H21B0.9600
C2—C71.384 (3)C21—H21C0.9600
C11—N1—H1108.1C23—C28—C27120.2 (3)
C11—N1—C22113.02 (16)C27—C28—H28119.9
C10—N1—H1108.1C4—C3—C2121.1 (2)
C10—N1—C11110.26 (16)C4—C3—H3A119.4
C10—N1—C22109.03 (14)C2—C3—H3A119.4
C22—N1—H1108.1C6—C7—C2122.0 (2)
C13—C9—C10118.82 (17)C6—C7—H7119.0
C8—C9—C13117.84 (18)C2—C7—H7119.0
C8—C9—C10123.32 (19)C23—C24—H24120.2
C9—C13—C12117.95 (17)C23—C24—C25119.6 (3)
O1—C13—C9121.50 (19)C25—C24—H24120.2
O1—C13—C12120.50 (19)C15—C20—H20119.9
C13—C12—C11118.64 (17)C19—C20—C15120.3 (3)
C14—C12—C13118.29 (19)C19—C20—H20119.9
C14—C12—C11123.07 (19)C20—C19—H19119.7
N1—C11—C12109.89 (16)C20—C19—C18120.6 (3)
N1—C11—H11A109.7C18—C19—H19119.7
N1—C11—H11B109.7C2—C1—H1A109.5
C12—C11—H11A109.7C2—C1—H1B109.5
C12—C11—H11B109.7C2—C1—H1C109.5
H11A—C11—H11B108.2H1A—C1—H1B109.5
N1—C10—C9112.41 (15)H1A—C1—H1C109.5
N1—C10—H10A109.1H1B—C1—H1C109.5
N1—C10—H10B109.1C15—C16—H16119.4
C9—C10—H10A109.1C17—C16—C15121.1 (3)
C9—C10—H10B109.1C17—C16—H16119.4
H10A—C10—H10B107.9C28—C27—H27119.7
C4—C5—C8117.3 (2)C26—C27—C28120.5 (3)
C6—C5—C8126.42 (19)C26—C27—H27119.7
C6—C5—C4116.3 (2)C19—C18—C21118.7 (4)
C9—C8—C5132.1 (2)C17—C18—C19118.4 (3)
C9—C8—H8113.9C17—C18—C21122.8 (3)
C5—C8—H8113.9C24—C25—H25119.7
C12—C14—H14115.4C26—C25—C24120.7 (3)
C12—C14—C15129.2 (2)C26—C25—H25119.7
C15—C14—H14115.4C27—C26—H26119.9
C5—C4—H4119.0C25—C26—C27120.2 (3)
C3—C4—C5121.9 (2)C25—C26—H26119.9
C3—C4—H4119.0C16—C17—C18121.4 (3)
N1—C22—H22A108.6C16—C17—H17119.3
N1—C22—H22B108.6C18—C17—H17119.3
H22A—C22—H22B107.5C29—O3—H3109.5
C23—C22—N1114.79 (16)O2—C29—O3121.5 (3)
C23—C22—H22A108.6O2—C29—C30124.9 (3)
C23—C22—H22B108.6O3—C29—C30113.5 (3)
C28—C23—C22120.3 (2)C29—C30—H30A109.5
C28—C23—C24118.8 (2)C29—C30—H30B109.5
C24—C23—C22120.9 (2)C29—C30—H30C109.5
C5—C6—H6119.4H30A—C30—H30B109.5
C7—C6—C5121.1 (2)H30A—C30—H30C109.5
C7—C6—H6119.4H30B—C30—H30C109.5
C20—C15—C14122.6 (2)C18—C21—H21A109.5
C16—C15—C14119.2 (2)C18—C21—H21B109.5
C16—C15—C20118.1 (2)C18—C21—H21C109.5
C3—C2—C7117.4 (2)H21A—C21—H21B109.5
C3—C2—C1121.4 (2)H21A—C21—H21C109.5
C7—C2—C1121.2 (2)H21B—C21—H21C109.5
C23—C28—H28119.9
N1—C22—C23—C28−100.9 (2)C14—C15—C20—C19177.7 (2)
N1—C22—C23—C2481.1 (3)C14—C15—C16—C17−179.5 (3)
C9—C13—C12—C11−3.3 (3)C4—C5—C8—C9167.5 (2)
C9—C13—C12—C14176.39 (18)C4—C5—C6—C7−3.6 (3)
O1—C13—C12—C11179.07 (19)C22—N1—C11—C12−174.39 (16)
O1—C13—C12—C14−1.3 (3)C22—N1—C10—C9177.83 (17)
C13—C9—C10—N120.4 (3)C22—C23—C28—C27−178.0 (2)
C13—C9—C8—C5178.0 (2)C22—C23—C24—C25177.0 (2)
C13—C12—C11—N1−32.5 (2)C23—C28—C27—C260.6 (4)
C13—C12—C14—C15−172.7 (2)C23—C24—C25—C261.6 (5)
C12—C14—C15—C2035.2 (4)C6—C5—C8—C9−14.1 (4)
C12—C14—C15—C16−148.4 (3)C6—C5—C4—C33.5 (3)
C11—N1—C10—C9−57.5 (2)C15—C20—C19—C180.5 (5)
C11—N1—C22—C2360.2 (2)C15—C16—C17—C182.9 (5)
C11—C12—C14—C157.0 (4)C28—C23—C24—C25−1.1 (4)
C10—N1—C11—C1263.3 (2)C28—C27—C26—C250.0 (5)
C10—N1—C22—C23−176.78 (19)C3—C2—C7—C62.7 (4)
C10—C9—C13—O1−172.6 (2)C7—C2—C3—C4−2.8 (3)
C10—C9—C13—C129.8 (3)C24—C23—C28—C270.0 (4)
C10—C9—C8—C5−0.4 (4)C24—C25—C26—C27−1.1 (5)
C5—C4—C3—C2−0.3 (4)C20—C15—C16—C17−2.9 (4)
C5—C6—C7—C20.6 (4)C20—C19—C18—C17−0.6 (5)
C8—C9—C13—O19.0 (3)C20—C19—C18—C21178.7 (3)
C8—C9—C13—C12−168.70 (18)C19—C18—C17—C16−1.0 (5)
C8—C9—C10—N1−161.29 (19)C1—C2—C3—C4177.3 (2)
C8—C5—C4—C3−178.0 (2)C1—C2—C7—C6−177.4 (2)
C8—C5—C6—C7178.0 (2)C16—C15—C20—C191.2 (4)
C14—C12—C11—N1147.8 (2)C21—C18—C17—C16179.6 (4)
Cg3 is the centroid of the C15–C20 ring.
D—H···AD—HH···AD···AD—H···A
N1—H1···Cl10.912.153.0490 (17)171
O3—H3···Cl10.822.263.053 (2)162
C11—H11A···Cl1i0.972.723.602 (2)151
C25—H25···Cg3ii0.932.853.582 (4)137
C30—H30C···Cg3iii0.972.963.675 (4)133
Table 1

Hydrogen-bond geometry (Å, °)

Cg3 is the centroid of the C15–C20 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯Cl10.912.153.0490 (17)171
O3—H3⋯Cl10.822.263.053 (2)162
C11—H11A⋯Cl1i0.972.723.602 (2)151
C25—H25⋯Cg3ii0.932.853.582 (4)137
C30—H30CCg3iii0.972.963.675 (4)133

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  H I El-Subbagh; S M Abu-Zaid; M A Mahran; F A Badria; A M Al-Obaid
Journal:  J Med Chem       Date:  2000-07-27       Impact factor: 7.446

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Journal:  Eur J Med Chem       Date:  2008-03-29       Impact factor: 6.514

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  6 in total

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