Literature DB >> 21754727

(Z)-2-(2-Hy-droxy-4-meth-oxy-benzyl-idene)-1-benzofuran-3(2H)-one.

J Satyanarayana Reddy1, N Ravi Kumar, J Venkata Prasad, G Gopikrishna, K Anand Solomon.   

Abstract

In the title compound, C(16)H(12)O(4), the 1-benzofuran-one unit is in a planar conformation [C-C-C-C = 179.69 (12)°]. The conformation around the C=C double bond [1.3370 (17) Å] is Z. In the crystal, the mol-ecules are stabilized by O-H⋯O (running parallel to the bc plane) and C-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 21754727      PMCID: PMC3120363          DOI: 10.1107/S1600536811016217

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and biological activity of substituted aurones, see: Varma & Varma (1992 ▶); Beney et al. (2001 ▶); Sim et al. (2008 ▶); Souard et al. (2010 ▶); Wang et al. (2007 ▶). For aurones as structural scaffolds in natural and synthetic compounds possessing diverse biological properties, see: Villemin et al. (1998 ▶). The title compound, which is an analogue of naturally occurring aurones, holds promise as an inhibitor against human melanocytes tyrosinase towards anti­hyper­pig­ment­ation, see: Okombi et al. (2006 ▶). For the assignment of conformations and the orientation of the substituents, see: Nardelli (1983 ▶, 1995 ▶); Klyne & Prelog (1960 ▶).

Experimental

Crystal data

C16H12O4 M = 268.26 Monoclinic, a = 7.1083 (4) Å b = 12.7072 (7) Å c = 14.4024 (8) Å β = 100.161 (2)° V = 1280.52 (12) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.35 × 0.30 × 0.25 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.906, T max = 0.975 19357 measured reflections 4765 independent reflections 2533 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.150 S = 1.02 4765 reflections 187 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811016217/ds2109sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811016217/ds2109Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811016217/ds2109Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H12O4F(000) = 560
Mr = 268.26Dx = 1.391 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3249 reflections
a = 7.1083 (4) Åθ = 2.9–25.3°
b = 12.7072 (7) ŵ = 0.10 mm1
c = 14.4024 (8) ÅT = 293 K
β = 100.161 (2)°Block, yellow
V = 1280.52 (12) Å30.35 × 0.30 × 0.25 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer4765 independent reflections
Radiation source: fine-focus sealed tube2533 reflections with I > 2σ(I)
graphiteRint = 0.047
ω and φ scansθmax = 32.9°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −10→5
Tmin = 0.906, Tmax = 0.975k = −17→19
19357 measured reflectionsl = −21→21
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.052H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.150w = 1/[σ2(Fo2) + (0.0683P)2 + 0.0121P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
4765 reflectionsΔρmax = 0.26 e Å3
187 parametersΔρmin = −0.19 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0043 (16)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.33155 (18)0.81587 (10)0.10935 (9)0.0378 (3)
C20.3577 (2)0.79394 (12)0.20448 (10)0.0498 (4)
H20.34930.84600.24900.060*
C30.3967 (2)0.69092 (12)0.22996 (11)0.0544 (4)
H30.41680.67320.29360.065*
C40.4072 (2)0.61232 (12)0.16407 (11)0.0529 (4)
H40.43210.54330.18400.064*
C50.3811 (2)0.63594 (11)0.06989 (11)0.0487 (4)
H50.38880.58380.02540.058*
C60.34267 (17)0.73990 (10)0.04224 (9)0.0383 (3)
C70.31090 (19)0.79320 (10)−0.04815 (9)0.0409 (3)
C80.27856 (18)0.90379 (10)−0.02558 (9)0.0380 (3)
C90.24089 (17)0.98235 (10)−0.08784 (9)0.0388 (3)
H90.23520.9621−0.15030.047*
C100.20767 (16)1.09256 (10)−0.07510 (9)0.0362 (3)
C110.2172 (2)1.14095 (10)0.01304 (10)0.0440 (3)
H110.24181.09990.06730.053*
C120.1913 (2)1.24709 (11)0.02151 (10)0.0492 (4)
H120.19871.27720.08090.059*
C130.15384 (19)1.30956 (10)−0.05866 (10)0.0412 (3)
C140.14158 (17)1.26536 (10)−0.14673 (9)0.0389 (3)
H140.11551.3072−0.20040.047*
C150.16833 (18)1.15787 (10)−0.15485 (9)0.0383 (3)
C160.0907 (2)1.48154 (11)−0.12239 (11)0.0557 (4)
H16A0.19331.4791−0.15770.083*
H16B0.07561.5523−0.10150.083*
H16C−0.02561.4589−0.16170.083*
O10.29265 (13)0.91457 (7)0.07146 (6)0.0425 (2)
O20.30983 (16)0.75813 (8)−0.12769 (7)0.0611 (3)
O30.15733 (16)1.11203 (8)−0.24045 (7)0.0558 (3)
O40.13342 (16)1.41402 (8)−0.04288 (7)0.0556 (3)
H3A0.153 (3)1.1617 (15)−0.2855 (16)0.092 (7)*
U11U22U33U12U13U23
C10.0425 (6)0.0355 (7)0.0351 (7)−0.0041 (5)0.0061 (5)0.0037 (6)
C20.0625 (9)0.0539 (9)0.0334 (7)−0.0009 (7)0.0092 (6)0.0034 (7)
C30.0590 (9)0.0622 (10)0.0417 (8)0.0000 (7)0.0081 (7)0.0153 (8)
C40.0516 (8)0.0457 (9)0.0598 (10)0.0006 (6)0.0052 (7)0.0184 (7)
C50.0538 (8)0.0382 (8)0.0518 (9)0.0018 (6)0.0032 (6)0.0015 (7)
C60.0413 (6)0.0349 (7)0.0370 (7)−0.0023 (5)0.0021 (5)0.0023 (5)
C70.0511 (7)0.0367 (7)0.0333 (7)−0.0009 (6)0.0029 (5)−0.0028 (6)
C80.0476 (7)0.0364 (7)0.0299 (6)−0.0026 (5)0.0065 (5)−0.0015 (5)
C90.0496 (7)0.0357 (7)0.0314 (6)−0.0021 (5)0.0079 (5)−0.0001 (5)
C100.0419 (6)0.0339 (7)0.0339 (7)−0.0024 (5)0.0099 (5)0.0007 (5)
C110.0608 (8)0.0390 (7)0.0347 (7)0.0017 (6)0.0154 (6)0.0027 (6)
C120.0736 (9)0.0420 (8)0.0361 (8)0.0030 (7)0.0212 (7)−0.0029 (6)
C130.0490 (7)0.0324 (7)0.0455 (8)0.0011 (5)0.0175 (6)−0.0015 (6)
C140.0476 (7)0.0336 (7)0.0362 (7)−0.0005 (5)0.0096 (5)0.0043 (5)
C150.0463 (7)0.0354 (7)0.0337 (7)−0.0051 (5)0.0086 (5)−0.0018 (5)
C160.0749 (10)0.0352 (8)0.0597 (10)0.0034 (7)0.0194 (8)0.0045 (7)
O10.0612 (6)0.0353 (5)0.0313 (5)−0.0006 (4)0.0092 (4)0.0004 (4)
O20.1001 (9)0.0452 (6)0.0353 (6)0.0094 (5)0.0048 (5)−0.0087 (5)
O30.1003 (8)0.0346 (6)0.0317 (5)−0.0049 (5)0.0092 (5)−0.0017 (4)
O40.0859 (7)0.0353 (6)0.0495 (6)0.0077 (5)0.0222 (5)−0.0011 (5)
C1—O11.3764 (15)C9—H90.9300
C1—C61.3781 (19)C10—C111.4014 (18)
C1—C21.3782 (19)C10—C151.4046 (18)
C2—C31.374 (2)C11—C121.3696 (18)
C2—H20.9300C11—H110.9300
C3—C41.389 (2)C12—C131.3876 (19)
C3—H30.9300C12—H120.9300
C4—C51.370 (2)C13—O41.3588 (16)
C4—H40.9300C13—C141.3758 (18)
C5—C61.3927 (18)C14—C151.3868 (18)
C5—H50.9300C14—H140.9300
C6—C71.4495 (18)C15—O31.3533 (16)
C7—O21.2280 (16)C16—O41.4203 (17)
C7—C81.4697 (18)C16—H16A0.9600
C8—C91.3370 (17)C16—H16B0.9600
C8—O11.3902 (15)C16—H16C0.9600
C9—C101.4373 (17)O3—H3A0.90 (2)
O1—C1—C6113.12 (11)C11—C10—C15116.89 (12)
O1—C1—C2124.11 (12)C11—C10—C9124.08 (12)
C6—C1—C2122.77 (12)C15—C10—C9119.01 (11)
C3—C2—C1116.33 (14)C12—C11—C10121.80 (13)
C3—C2—H2121.8C12—C11—H11119.1
C1—C2—H2121.8C10—C11—H11119.1
C2—C3—C4122.35 (14)C11—C12—C13119.89 (13)
C2—C3—H3118.8C11—C12—H12120.1
C4—C3—H3118.8C13—C12—H12120.1
C5—C4—C3120.32 (14)O4—C13—C14124.18 (12)
C5—C4—H4119.8O4—C13—C12115.47 (12)
C3—C4—H4119.8C14—C13—C12120.34 (12)
C4—C5—C6118.46 (14)C13—C14—C15119.51 (12)
C4—C5—H5120.8C13—C14—H14120.2
C6—C5—H5120.8C15—C14—H14120.2
C1—C6—C5119.77 (13)O3—C15—C14120.93 (12)
C1—C6—C7106.47 (11)O3—C15—C10117.50 (12)
C5—C6—C7133.75 (13)C14—C15—C10121.57 (12)
O2—C7—C6130.00 (13)O4—C16—H16A109.5
O2—C7—C8125.30 (13)O4—C16—H16B109.5
C6—C7—C8104.70 (11)H16A—C16—H16B109.5
C9—C8—O1124.83 (12)O4—C16—H16C109.5
C9—C8—C7125.89 (12)H16A—C16—H16C109.5
O1—C8—C7109.29 (10)H16B—C16—H16C109.5
C8—C9—C10131.29 (12)C1—O1—C8106.42 (10)
C8—C9—H9114.4C15—O3—H3A110.1 (13)
C10—C9—H9114.4C13—O4—C16117.98 (11)
O1—C1—C2—C3−179.59 (12)C8—C9—C10—C112.7 (2)
C6—C1—C2—C30.2 (2)C8—C9—C10—C15−179.18 (13)
C1—C2—C3—C4−0.8 (2)C15—C10—C11—C12−0.59 (19)
C2—C3—C4—C50.9 (2)C9—C10—C11—C12177.54 (13)
C3—C4—C5—C6−0.4 (2)C10—C11—C12—C130.2 (2)
O1—C1—C6—C5−179.94 (11)C11—C12—C13—O4−178.96 (13)
C2—C1—C6—C50.23 (19)C11—C12—C13—C140.4 (2)
O1—C1—C6—C70.83 (14)O4—C13—C14—C15178.78 (12)
C2—C1—C6—C7−178.99 (12)C12—C13—C14—C15−0.47 (19)
C4—C5—C6—C1−0.12 (19)C13—C14—C15—O3−179.95 (11)
C4—C5—C6—C7178.85 (14)C13—C14—C15—C100.05 (18)
C1—C6—C7—O2179.03 (14)C11—C10—C15—O3−179.53 (11)
C5—C6—C7—O20.0 (3)C9—C10—C15—O32.24 (17)
C1—C6—C7—C8−0.86 (14)C11—C10—C15—C140.47 (18)
C5—C6—C7—C8−179.93 (14)C9—C10—C15—C14−177.76 (11)
O2—C7—C8—C90.9 (2)C6—C1—O1—C8−0.43 (14)
C6—C7—C8—C9−179.20 (12)C2—C1—O1—C8179.39 (12)
O2—C7—C8—O1−179.27 (13)C9—C8—O1—C1179.68 (12)
C6—C7—C8—O10.63 (14)C7—C8—O1—C1−0.15 (13)
O1—C8—C9—C100.5 (2)C14—C13—O4—C162.1 (2)
C7—C8—C9—C10−179.69 (12)C12—C13—O4—C16−178.64 (13)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O2i0.90 (2)1.80 (2)2.6952 (14)170.0 (19)
C16—H16A···O3i0.962.593.3328 (14)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3A⋯O2i0.90 (2)1.80 (2)2.6952 (14)170.0 (19)
C16—H16A⋯O3i0.962.593.3328 (14)135

Symmetry code: (i) .

  5 in total

1.  Discovery of benzylidenebenzofuran-3(2H)-one (aurones) as inhibitors of tyrosinase derived from human melanocytes.

Authors:  Sabrina Okombi; Delphine Rival; Sébastien Bonnet; Anne-Marie Mariotte; Eric Perrier; Ahcène Boumendjel
Journal:  J Med Chem       Date:  2006-01-12       Impact factor: 7.446

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  1-Azaaurones derived from the naturally occurring aurones as potential antimalarial drugs.

Authors:  Florence Souard; Sabrina Okombi; Chantal Beney; Séverine Chevalley; Alexis Valentin; Ahcène Boumendjel
Journal:  Bioorg Med Chem       Date:  2010-06-09       Impact factor: 3.641

4.  Dimethoxyaurones: Potent inhibitors of ABCG2 (breast cancer resistance protein).

Authors:  Hong-May Sim; Chong-Yew Lee; Pui Lai Rachel Ee; Mei-Lin Go
Journal:  Eur J Pharm Sci       Date:  2008-08-03       Impact factor: 4.384

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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