Literature DB >> 21754723

Ammonium 4,6-dioxo-2-sulfanylidene-1,3-diazinan-5-ide.

Richard Betz1, Thomas Gerber.   

Abstract

In the title salt, NH(4) (+)·C(4)H(3)N(2)O(2)S(-), the asymmetric unit comprises two half-occupied ammonium positions and a 4,6-dioxo-2-sulfanylidene-1,3-diazinan-5-ide anion. The anion shows C(2) as well as C(s) symmetry and is present in its diketonic tautomeric form. Intra-cyclic angles span a range from 116.64 (9)-124.67 (9)°. Inter-molecular N-H⋯O hydrogen bonds connect the cations and anions to form a three-dimensional network.

Entities:  

Year:  2011        PMID: 21754723      PMCID: PMC3120410          DOI: 10.1107/S1600536811016722

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of 2-thio­barbituric acid, its hydrate and several of its tautomeric forms, see: Calas & Martinez (1967 ▶); Chierotti et al. (2010 ▶). For graph-set analysis of hydrogen bonds, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶).

Experimental

Crystal data

NH4 +·C4H3N2O2S− M = 161.19 Monoclinic, a = 11.3308 (4) Å b = 3.9396 (1) Å c = 14.6945 (5) Å β = 98.644 (1)° V = 648.49 (4) Å3 Z = 4 Mo Kα radiation μ = 0.44 mm−1 T = 200 K 0.53 × 0.19 × 0.08 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.876, T max = 1.000 6071 measured reflections 1604 independent reflections 1476 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.023 wR(F 2) = 0.067 S = 1.10 1604 reflections 116 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811016722/bq2297sup1.cif Supplementary material file. DOI: 10.1107/S1600536811016722/bq2297Isup2.cdx Structure factors: contains datablocks I. DOI: 10.1107/S1600536811016722/bq2297Isup3.hkl Supplementary material file. DOI: 10.1107/S1600536811016722/bq2297Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
NH4+·C4H3N2O2SF(000) = 336
Mr = 161.19Dx = 1.651 Mg m3
Monoclinic, P2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ycCell parameters from 1604 reflections
a = 11.3308 (4) Åθ = 3.1–28.3°
b = 3.9396 (1) ŵ = 0.44 mm1
c = 14.6945 (5) ÅT = 200 K
β = 98.644 (1)°Rod, colourless
V = 648.49 (4) Å30.53 × 0.19 × 0.08 mm
Z = 4
Bruker APEXII CCD diffractometer1604 independent reflections
Radiation source: fine-focus sealed tube1476 reflections with I > 2σ(I)
graphiteRint = 0.017
φ and ω scansθmax = 28.3°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −14→15
Tmin = 0.876, Tmax = 1.000k = −4→5
6071 measured reflectionsl = −16→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.023Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.067H atoms treated by a mixture of independent and constrained refinement
S = 1.10w = 1/[σ2(Fo2) + (0.0357P)2 + 0.2247P] where P = (Fo2 + 2Fc2)/3
1604 reflections(Δ/σ)max = 0.001
116 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.20 e Å3
xyzUiso*/Ueq
S10.25562 (2)1.03184 (7)0.667084 (17)0.01875 (10)
O10.05012 (7)0.4191 (2)0.39646 (5)0.02247 (19)
O20.44635 (7)0.7956 (3)0.39645 (6)0.0262 (2)
N10.34683 (8)0.8796 (3)0.51685 (6)0.01740 (19)
H710.4077 (15)0.978 (4)0.5427 (12)0.027 (4)*
N20.15417 (8)0.7040 (2)0.51663 (6)0.01649 (19)
H720.0908 (14)0.678 (4)0.5433 (10)0.024 (4)*
C10.25140 (9)0.8614 (3)0.56115 (7)0.0151 (2)
C20.14770 (9)0.5599 (3)0.42919 (7)0.0160 (2)
C30.24801 (9)0.5883 (3)0.38550 (7)0.0182 (2)
H30.24660.49600.32560.022*
C40.35073 (9)0.7513 (3)0.42884 (7)0.0177 (2)
N900.50000.4019 (4)0.25000.0202 (3)
H9010.5638 (14)0.272 (4)0.2710 (11)0.034 (4)*
H9020.4821 (15)0.527 (4)0.2944 (11)0.031 (4)*
N910.00000.9763 (4)0.25000.0234 (3)
H9110.0284 (17)1.109 (5)0.2961 (13)0.048 (5)*
H9120.0539 (19)0.853 (6)0.2290 (15)0.064 (6)*
U11U22U33U12U13U23
S10.01756 (15)0.02527 (16)0.01378 (14)0.00002 (10)0.00348 (10)−0.00417 (9)
O10.0173 (4)0.0325 (4)0.0175 (4)−0.0085 (3)0.0023 (3)−0.0039 (3)
O20.0176 (4)0.0417 (5)0.0209 (4)−0.0090 (4)0.0085 (3)−0.0104 (4)
N10.0138 (4)0.0247 (5)0.0139 (4)−0.0039 (4)0.0025 (3)−0.0034 (4)
N20.0136 (4)0.0234 (5)0.0130 (4)−0.0027 (3)0.0037 (3)−0.0001 (3)
C10.0153 (4)0.0169 (5)0.0131 (4)0.0005 (4)0.0020 (4)0.0017 (4)
C20.0159 (4)0.0190 (5)0.0127 (5)−0.0013 (4)0.0007 (4)0.0012 (4)
C30.0184 (5)0.0237 (5)0.0128 (5)−0.0030 (4)0.0031 (4)−0.0022 (4)
C40.0167 (5)0.0228 (5)0.0141 (4)−0.0014 (4)0.0043 (4)−0.0012 (4)
N900.0193 (6)0.0243 (7)0.0170 (6)0.0000.0032 (5)0.000
N910.0251 (7)0.0260 (7)0.0204 (7)0.0000.0074 (6)0.000
S1—C11.6893 (10)N2—H720.874 (16)
O1—C21.2656 (13)C2—C31.3914 (15)
O2—C41.2592 (13)C3—C41.3963 (14)
N1—C11.3452 (14)C3—H30.9500
N1—C41.3955 (13)N90—H9010.902 (17)
N1—H710.832 (17)N90—H9020.866 (17)
N2—C11.3453 (13)N91—H9110.88 (2)
N2—C21.3965 (13)N91—H9120.87 (2)
C1—N1—C4124.67 (9)O1—C2—N2116.73 (10)
C1—N1—H71118.4 (12)C3—C2—N2117.27 (9)
C4—N1—H71116.9 (12)C2—C3—C4120.62 (10)
C1—N2—C2124.11 (9)C2—C3—H3119.7
C1—N2—H72120.3 (10)C4—C3—H3119.7
C2—N2—H72115.5 (10)O2—C4—N1116.68 (9)
N1—C1—N2116.64 (9)O2—C4—C3126.64 (10)
N1—C1—S1120.74 (8)N1—C4—C3116.68 (9)
N2—C1—S1122.62 (8)H901—N90—H902109.4 (14)
O1—C2—C3125.99 (10)H911—N91—H912114.2 (19)
C4—N1—C1—N20.76 (16)O1—C2—C3—C4179.77 (11)
C4—N1—C1—S1−178.90 (8)N2—C2—C3—C40.82 (16)
C2—N2—C1—N10.48 (16)C1—N1—C4—O2178.58 (11)
C2—N2—C1—S1−179.87 (8)C1—N1—C4—C3−1.12 (16)
C1—N2—C2—O1179.70 (10)C2—C3—C4—O2−179.40 (12)
C1—N2—C2—C3−1.25 (16)C2—C3—C4—N10.27 (16)
D—H···AD—HH···AD···AD—H···A
N1—H71···O2i0.832 (17)1.971 (17)2.8025 (12)179.0 (16)
N2—H72···O1ii0.874 (16)1.976 (16)2.8483 (12)175.7 (15)
N90—H901···S1iii0.902 (17)2.426 (16)3.3252 (8)174.8 (14)
N90—H902···O20.866 (17)1.927 (17)2.7929 (12)177.7 (16)
N91—H911···O1iv0.88 (2)1.90 (2)2.7622 (13)166.0 (18)
N91—H912···O1v0.87 (2)2.66 (2)3.0669 (15)110.0 (16)
N91—H912···S1vi0.87 (2)2.62 (2)3.3069 (3)136.0 (19)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H71⋯O2i0.832 (17)1.971 (17)2.8025 (12)179.0 (16)
N2—H72⋯O1ii0.874 (16)1.976 (16)2.8483 (12)175.7 (15)
N90—H901⋯S1iii0.902 (17)2.426 (16)3.3252 (8)174.8 (14)
N90—H902⋯O20.866 (17)1.927 (17)2.7929 (12)177.7 (16)
N91—H911⋯O1iv0.88 (2)1.90 (2)2.7622 (13)166.0 (18)
N91—H912⋯O1v0.87 (2)2.66 (2)3.0669 (15)110.0 (16)
N91—H912⋯S1vi0.87 (2)2.62 (2)3.3069 (3)136.0 (19)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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