Literature DB >> 21754708

1,10-Phenanthrolin-1-ium hydrogen d,l-tartrate dihydrate.

Sit Foon Cheng1, Seik Weng Ng.   

Abstract

In the title hydrated molecular salt, C(12)H(9)N(2) (+)·C(4)H(5)O(6) (-)·2H(2)O, the cation is almost planar (r.m.s. deviation = 0.014 Å); the carbon skeleton of the anion assumes a trans conformation [C-C-C-C torsion angle = -179.86 (14)°]. The carboxyl end of one hydrogen tartrate anion forms a short hydrogen bond to the carboxyl-ate end of another anion [O⋯O = 2.508 (2) Å] in a head-to-tail manner, forming a chain; the chains and water mol-ecules inter-act, generating an O-H⋯O hydrogen-bonded layer. The cation binds to the layer by an N-H⋯O hydrogen bond.

Entities:  

Year:  2011        PMID: 21754708      PMCID: PMC3120439          DOI: 10.1107/S1600536811015972

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the trihydrated 1,10-phenanthrolin-1-ium salts of d- and l-tartaric acid, see: Derikvand & Olmstead (2010 ▶); Wang et al. (2006 ▶).

Experimental

Crystal data

C12H9N2 +·C4H5O6 −·2H2O M = 366.32 Triclinic, a = 7.0933 (7) Å b = 10.5849 (11) Å c = 11.4694 (11) Å α = 98.081 (1)° β = 100.350 (1)° γ = 103.903 (1)° V = 806.95 (14) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 100 K 0.40 × 0.10 × 0.10 mm

Data collection

Bruker SMART APEX diffractometer 7610 measured reflections 3635 independent reflections 2880 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.160 S = 1.04 3635 reflections 267 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.35 e Å−3 Δρmin = −0.31 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811015972/bt5536sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015972/bt5536Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H9N2+·C4H5O6·2H2OZ = 2
Mr = 366.32F(000) = 384
Triclinic, P1Dx = 1.508 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.0933 (7) ÅCell parameters from 2722 reflections
b = 10.5849 (11) Åθ = 2.5–28.2°
c = 11.4694 (11) ŵ = 0.12 mm1
α = 98.081 (1)°T = 100 K
β = 100.350 (1)°Prism, colorless
γ = 103.903 (1)°0.40 × 0.10 × 0.10 mm
V = 806.95 (14) Å3
Bruker SMART APEX diffractometer2880 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.028
graphiteθmax = 27.5°, θmin = 1.8°
ω scansh = −9→9
7610 measured reflectionsk = −13→13
3635 independent reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.160H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.1012P)2 + 0.1854P] where P = (Fo2 + 2Fc2)/3
3635 reflections(Δ/σ)max = 0.001
267 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.31 e Å3
xyzUiso*/Ueq
O10.0272 (2)0.97612 (14)0.33939 (12)0.0172 (3)
O20.00294 (19)1.04199 (14)0.16223 (12)0.0167 (3)
O30.3922 (2)0.95680 (14)0.34847 (12)0.0163 (3)
O40.1832 (2)0.78094 (13)0.12086 (12)0.0154 (3)
O50.6410 (2)1.02428 (13)0.15147 (12)0.0153 (3)
O60.5609 (2)0.80301 (14)0.09605 (13)0.0192 (3)
O1W0.2228 (2)0.90933 (13)0.55174 (12)0.0145 (3)
O2W0.1595 (2)1.23818 (15)0.04324 (13)0.0174 (3)
N10.2289 (2)0.65380 (16)0.46822 (15)0.0143 (3)
N20.2713 (2)0.66417 (16)0.71074 (15)0.0171 (4)
C10.0952 (3)1.00580 (17)0.25142 (16)0.0125 (4)
C20.3085 (3)1.00188 (18)0.24666 (16)0.0124 (4)
H2A0.39021.09340.24750.015*
C30.3050 (3)0.91028 (18)0.12952 (16)0.0115 (4)
H3A0.25050.94730.05940.014*
C40.5161 (3)0.90552 (18)0.12418 (16)0.0122 (4)
C50.2130 (3)0.6578 (2)0.35202 (18)0.0184 (4)
H5A0.20270.73660.32400.022*
C60.2114 (3)0.5459 (2)0.27087 (19)0.0220 (5)
H60.20150.54870.18760.026*
C70.2243 (3)0.4319 (2)0.31181 (19)0.0213 (4)
H70.22160.35520.25670.026*
C80.2417 (3)0.42852 (19)0.43589 (19)0.0178 (4)
C90.2446 (3)0.54419 (18)0.51418 (17)0.0138 (4)
C100.2550 (3)0.3129 (2)0.4856 (2)0.0220 (5)
H100.25300.23400.43370.026*
C110.2704 (3)0.3145 (2)0.6049 (2)0.0224 (5)
H11A0.27780.23660.63560.027*
C120.2757 (3)0.43249 (19)0.68601 (19)0.0173 (4)
C130.2645 (3)0.54791 (18)0.64134 (18)0.0149 (4)
C140.2935 (3)0.4390 (2)0.8110 (2)0.0227 (5)
H140.30040.36330.84560.027*
C150.3006 (3)0.5558 (2)0.8818 (2)0.0236 (5)
H150.31350.56260.96650.028*
C160.2888 (3)0.6661 (2)0.82806 (18)0.0210 (4)
H160.29360.74640.87870.025*
H30.517 (5)1.006 (3)0.381 (3)0.048 (9)*
H40.066 (4)0.767 (3)0.067 (3)0.032 (7)*
H50.781 (5)1.020 (3)0.156 (3)0.057 (10)*
H110.145 (5)0.944 (4)0.593 (4)0.067 (11)*
H120.195 (4)0.938 (3)0.480 (3)0.039 (8)*
H210.120 (5)1.172 (4)0.074 (3)0.052 (10)*
H220.247 (5)1.223 (3)0.003 (3)0.037 (8)*
H10.233 (5)0.731 (3)0.520 (3)0.046 (8)*
U11U22U33U12U13U23
O10.0162 (7)0.0231 (7)0.0161 (7)0.0078 (6)0.0087 (5)0.0054 (5)
O20.0131 (7)0.0224 (7)0.0178 (7)0.0070 (5)0.0060 (5)0.0070 (6)
O30.0120 (7)0.0243 (7)0.0118 (7)0.0032 (6)0.0015 (5)0.0055 (5)
O40.0139 (7)0.0137 (7)0.0165 (7)0.0017 (5)0.0018 (5)0.0020 (5)
O50.0123 (7)0.0156 (7)0.0197 (7)0.0047 (5)0.0058 (5)0.0036 (5)
O60.0187 (7)0.0173 (7)0.0250 (8)0.0097 (6)0.0070 (6)0.0042 (6)
O1W0.0160 (7)0.0181 (7)0.0111 (7)0.0070 (5)0.0038 (5)0.0037 (5)
O2W0.0167 (7)0.0191 (7)0.0168 (7)0.0047 (6)0.0053 (6)0.0034 (6)
N10.0141 (8)0.0146 (8)0.0132 (8)0.0028 (6)0.0023 (6)0.0017 (6)
N20.0195 (8)0.0153 (8)0.0154 (8)0.0040 (6)0.0017 (7)0.0033 (6)
C10.0139 (9)0.0108 (8)0.0123 (9)0.0027 (7)0.0044 (7)−0.0003 (7)
C20.0105 (8)0.0153 (9)0.0120 (9)0.0034 (7)0.0039 (7)0.0027 (7)
C30.0115 (8)0.0142 (8)0.0101 (8)0.0042 (7)0.0035 (7)0.0041 (7)
C40.0146 (9)0.0153 (8)0.0083 (8)0.0053 (7)0.0036 (7)0.0041 (7)
C50.0159 (9)0.0225 (10)0.0166 (10)0.0039 (8)0.0040 (7)0.0051 (8)
C60.0196 (10)0.0278 (11)0.0169 (10)0.0038 (8)0.0059 (8)0.0009 (8)
C70.0148 (9)0.0226 (10)0.0229 (11)0.0041 (8)0.0051 (8)−0.0062 (8)
C80.0110 (9)0.0167 (9)0.0230 (10)0.0016 (7)0.0039 (7)−0.0015 (8)
C90.0107 (8)0.0125 (8)0.0178 (10)0.0037 (7)0.0020 (7)0.0015 (7)
C100.0184 (10)0.0128 (9)0.0330 (12)0.0042 (8)0.0063 (9)−0.0019 (8)
C110.0201 (10)0.0122 (9)0.0354 (12)0.0058 (8)0.0042 (9)0.0065 (8)
C120.0131 (9)0.0145 (9)0.0239 (11)0.0038 (7)0.0020 (8)0.0050 (8)
C130.0113 (8)0.0134 (9)0.0189 (10)0.0029 (7)0.0016 (7)0.0031 (7)
C140.0227 (10)0.0194 (10)0.0282 (11)0.0068 (8)0.0026 (9)0.0137 (9)
C150.0270 (11)0.0248 (11)0.0188 (10)0.0056 (9)0.0016 (8)0.0105 (8)
C160.0262 (11)0.0180 (10)0.0164 (10)0.0047 (8)0.0016 (8)0.0017 (8)
O1—C11.241 (2)C3—H3A1.0000
O2—C11.269 (2)C5—C61.395 (3)
O3—C21.410 (2)C5—H5A0.9500
O3—H30.89 (3)C6—C71.372 (3)
O4—C31.412 (2)C6—H60.9500
O4—H40.91 (3)C7—C81.412 (3)
O5—C41.311 (2)C7—H70.9500
O5—H51.00 (3)C8—C91.406 (3)
O6—C41.219 (2)C8—C101.437 (3)
O1W—H110.90 (4)C9—C131.434 (3)
O1W—H120.92 (3)C10—C111.350 (3)
O2W—H210.84 (4)C10—H100.9500
O2W—H220.87 (3)C11—C121.437 (3)
N1—C51.325 (3)C11—H11A0.9500
N1—C91.360 (3)C12—C131.403 (3)
N1—H10.93 (3)C12—C141.407 (3)
N2—C161.326 (3)C14—C151.365 (3)
N2—C131.354 (2)C14—H140.9500
C1—C21.534 (2)C15—C161.407 (3)
C2—C31.535 (2)C15—H150.9500
C2—H2A1.0000C16—H160.9500
C3—C41.522 (2)
C2—O3—H3111 (2)C5—C6—H6120.1
C3—O4—H4110.2 (17)C6—C7—C8119.99 (19)
C4—O5—H5111.6 (19)C6—C7—H7120.0
H11—O1W—H12101 (3)C8—C7—H7120.0
H21—O2W—H22109 (3)C9—C8—C7118.09 (19)
C5—N1—C9122.93 (18)C9—C8—C10118.62 (19)
C5—N1—H1117.6 (19)C7—C8—C10123.30 (19)
C9—N1—H1119.4 (19)N1—C9—C8119.30 (18)
C16—N2—C13116.48 (17)N1—C9—C13119.82 (17)
O1—C1—O2125.36 (18)C8—C9—C13120.88 (18)
O1—C1—C2119.50 (17)C11—C10—C8121.05 (19)
O2—C1—C2115.13 (16)C11—C10—H10119.5
O3—C2—C1109.60 (14)C8—C10—H10119.5
O3—C2—C3110.78 (15)C10—C11—C12120.86 (19)
C1—C2—C3109.30 (14)C10—C11—H11A119.6
O3—C2—H2A109.0C12—C11—H11A119.6
C1—C2—H2A109.0C13—C12—C14117.29 (18)
C3—C2—H2A109.0C13—C12—C11119.93 (19)
O4—C3—C4109.91 (14)C14—C12—C11122.78 (18)
O4—C3—C2111.42 (14)N2—C13—C12124.24 (18)
C4—C3—C2109.66 (14)N2—C13—C9117.11 (17)
O4—C3—H3A108.6C12—C13—C9118.65 (18)
C4—C3—H3A108.6C15—C14—C12118.92 (19)
C2—C3—H3A108.6C15—C14—H14120.5
O6—C4—O5124.72 (17)C12—C14—H14120.5
O6—C4—C3123.46 (17)C14—C15—C16119.4 (2)
O5—C4—C3111.81 (15)C14—C15—H15120.3
N1—C5—C6119.94 (19)C16—C15—H15120.3
N1—C5—H5A120.0N2—C16—C15123.7 (2)
C6—C5—H5A120.0N2—C16—H16118.1
C7—C6—C5119.74 (19)C15—C16—H16118.1
C7—C6—H6120.1
O1—C1—C2—O32.5 (2)C10—C8—C9—C131.3 (3)
O2—C1—C2—O3−178.33 (15)C9—C8—C10—C11−0.1 (3)
O1—C1—C2—C3124.08 (18)C7—C8—C10—C11−179.65 (19)
O2—C1—C2—C3−56.7 (2)C8—C10—C11—C12−0.6 (3)
O3—C2—C3—O462.92 (19)C10—C11—C12—C130.1 (3)
C1—C2—C3—O4−57.94 (19)C10—C11—C12—C14−179.4 (2)
O3—C2—C3—C4−58.99 (19)C16—N2—C13—C12−0.3 (3)
C1—C2—C3—C4−179.86 (14)C16—N2—C13—C9179.70 (17)
O4—C3—C4—O611.4 (2)C14—C12—C13—N20.6 (3)
C2—C3—C4—O6134.17 (19)C11—C12—C13—N2−178.96 (18)
O4—C3—C4—O5−169.64 (14)C14—C12—C13—C9−179.49 (17)
C2—C3—C4—O5−46.8 (2)C11—C12—C13—C91.0 (3)
C9—N1—C5—C60.1 (3)N1—C9—C13—N2−1.5 (3)
N1—C5—C6—C70.7 (3)C8—C9—C13—N2178.28 (17)
C5—C6—C7—C8−0.8 (3)N1—C9—C13—C12178.54 (17)
C6—C7—C8—C90.2 (3)C8—C9—C13—C12−1.7 (3)
C6—C7—C8—C10179.72 (19)C13—C12—C14—C15−0.6 (3)
C5—N1—C9—C8−0.8 (3)C11—C12—C14—C15178.92 (19)
C5—N1—C9—C13179.01 (18)C12—C14—C15—C160.4 (3)
C7—C8—C9—N10.6 (3)C13—N2—C16—C150.1 (3)
C10—C8—C9—N1−178.97 (17)C14—C15—C16—N2−0.2 (3)
C7—C8—C9—C13−179.19 (17)
D—H···AD—HH···AD···AD—H···A
O3—H3···O1wi0.89 (3)1.82 (3)2.709 (2)175 (3)
O4—H4···O2wii0.90 (3)1.84 (3)2.739 (2)172 (3)
O5—H5···O2iii0.99 (3)1.52 (3)2.508 (2)169 (3)
O1w—H12···O10.93 (3)1.97 (3)2.846 (2)157 (3)
O1w—H11···O1iv0.90 (4)1.86 (4)2.753 (2)173 (4)
O2w—H21···O20.84 (4)1.93 (4)2.764 (2)168 (3)
O2w—H22···O6v0.87 (3)1.97 (3)2.835 (2)176 (3)
N1—H1···O1w0.93 (3)1.89 (3)2.753 (2)153 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O1wi0.89 (3)1.82 (3)2.709 (2)175 (3)
O4—H4⋯O2wii0.90 (3)1.84 (3)2.739 (2)172 (3)
O5—H5⋯O2iii0.99 (3)1.52 (3)2.508 (2)169 (3)
O1w—H12⋯O10.93 (3)1.97 (3)2.846 (2)157 (3)
O1w—H11⋯O1iv0.90 (4)1.86 (4)2.753 (2)173 (4)
O2w—H21⋯O20.84 (4)1.93 (4)2.764 (2)168 (3)
O2w—H22⋯O6v0.87 (3)1.97 (3)2.835 (2)176 (3)
N1—H1⋯O1w0.93 (3)1.89 (3)2.753 (2)153 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1,10-Phenanthrolin-1-ium hydrogen (S,S)-tartrate trihydrate and a correction.

Authors:  Zohreh Derikvand; Marilyn M Olmstead
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-19
  2 in total

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