Literature DB >> 21754687

Diaqua-[5,5'-dicarb-oxy-2,2'-(ethane-1,2-di-yl)bis-(1H-imidazole-4-carboxyl-ato)]cobalt(II).

Ying Wang, Xin-Lian Gao.   

Abstract

In the title complex, [Co(C(12)H(8)N(4)O(8))(H(2)O)(2)], the Co(II) atom is coordinated by two N and two O atoms of the tetra-dentate 5,5'-dicarb-oxy-2,2'-(ethane-1,2-di-yl)bis-(1H-imidazole-4-carboxy-l-ate) anion. The slightly distorted octa-hedral coordination environment is completed by the O atoms of two water mol-ecules in axial positions. An intra-molecular O-H⋯O hydrogen bond between the carb-oxy and carboxyl-ate groups stabilizes the mol-ecular configuration. Adjacent mol-ecules are linked through O-H⋯O and N-H⋯O hydrogen bonds between the carb-oxy/carboxyl-ate groups, water mol-ecules and imidazole fragments into a three-dimensional network.

Entities:  

Year:  2011        PMID: 21754687      PMCID: PMC3120334          DOI: 10.1107/S1600536811019672

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to complexes based on 1H-imidazole-4,5-dicarb­oxy­lic acid and its derivatives, see: Das et al. (2010 ▶); Sun et al. (2010 ▶); Zhang et al. (2010 ▶).

Experimental

Crystal data

[Co(C12H8N4O8)(H2O)2] M = 431.19 Orthorhombic, a = 24.683 (5) Å b = 27.885 (6) Å c = 8.7340 (17) Å V = 6012 (2) Å3 Z = 16 Mo Kα radiation μ = 1.21 mm−1 T = 293 K 0.18 × 0.14 × 0.09 mm

Data collection

Rigaku Saturn CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2006 ▶) T min = 0.811, T max = 0.899 7187 measured reflections 2693 independent reflections 2223 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.079 S = 1.01 2693 reflections 245 parameters 1 restraint H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.35 e Å−3 Absolute structure: Flack (1983) ▶, 1126 Friedel pairs Flack parameter: 0.20 (2) Data collection: CrystalClear (Rigaku/MSC, 2006 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811019672/wm2487sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811019672/wm2487Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C12H8N4O8)(H2O)2]F(000) = 3504
Mr = 431.19Dx = 1.906 Mg m3
Orthorhombic, Fdd2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: F 2 -2dθ = 2.6–27.8°
a = 24.683 (5) ŵ = 1.21 mm1
b = 27.885 (6) ÅT = 293 K
c = 8.7340 (17) ÅPrism, red
V = 6012 (2) Å30.18 × 0.14 × 0.09 mm
Z = 16
Rigaku Saturn CCD diffractometer2693 independent reflections
Radiation source: fine-focus sealed tube2223 reflections with I > 2σ(I)
graphiteRint = 0.046
Detector resolution: 28.5714 pixels mm-1θmax = 26.0°, θmin = 2.2°
ω scansh = −30→11
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2006)k = −31→33
Tmin = 0.811, Tmax = 0.899l = −10→10
7187 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H-atom parameters constrained
wR(F2) = 0.079w = 1/[σ2(Fo2) + (0.0302P)2] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
2693 reflectionsΔρmax = 0.37 e Å3
245 parametersΔρmin = −0.35 e Å3
1 restraintAbsolute structure: Flack (1983), 1126 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.20 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.15380 (3)0.073588 (18)0.83795 (11)0.02698 (17)
N10.17562 (18)0.12247 (13)0.6742 (5)0.0234 (9)
N20.19660 (17)0.17992 (13)0.5122 (5)0.0266 (11)
H2A0.20140.20820.47510.032*
N30.13408 (17)0.12246 (13)1.0033 (5)0.0246 (10)
N40.11839 (17)0.17995 (13)1.1637 (5)0.0238 (11)
H4A0.11740.20811.20390.029*
O10.18202 (16)0.02761 (10)0.6567 (4)0.0338 (9)
O20.21834 (16)0.02922 (12)0.4193 (4)0.0447 (11)
O30.24378 (15)0.09236 (12)0.2360 (4)0.0375 (9)
H30.22680.07200.29020.045*
O40.24502 (15)0.17202 (12)0.2168 (4)0.0381 (9)
O50.11949 (15)0.02774 (11)1.0134 (4)0.0329 (9)
O60.07457 (15)0.03203 (11)1.2358 (4)0.0366 (10)
O70.05925 (15)0.09672 (12)1.4375 (4)0.0377 (10)
H70.06090.07251.37880.045*
O80.06967 (16)0.17524 (12)1.4593 (5)0.0422 (10)
O90.07403 (15)0.07148 (10)0.7490 (4)0.0338 (9)
H1W0.04670.07300.80780.041*
H2W0.06690.08880.67140.041*
O100.22935 (16)0.06549 (14)0.9300 (5)0.0521 (12)
H3W0.24640.05811.01120.062*
H4W0.25470.08040.88460.062*
C10.1996 (2)0.04938 (18)0.5417 (6)0.0318 (13)
C20.1972 (2)0.10239 (16)0.5440 (6)0.0263 (12)
C30.2095 (2)0.13797 (16)0.4409 (5)0.0229 (11)
C40.2348 (2)0.13487 (19)0.2884 (6)0.0317 (13)
C50.1748 (2)0.16963 (16)0.6526 (6)0.0236 (12)
C60.1512 (2)0.20512 (18)0.7602 (6)0.0331 (14)
H6A0.11220.20120.75870.040*
H6B0.15900.23690.72080.040*
C70.1698 (2)0.20335 (17)0.9274 (6)0.0300 (13)
H7A0.20790.19490.92950.036*
H7B0.16640.23520.97080.036*
C80.1398 (2)0.16921 (17)1.0263 (6)0.0257 (12)
C90.09834 (19)0.13883 (16)1.2301 (6)0.0244 (11)
C100.0749 (2)0.13908 (18)1.3862 (6)0.0278 (12)
C110.1094 (2)0.10327 (15)1.1278 (5)0.0216 (12)
C120.1005 (2)0.05041 (17)1.1266 (6)0.0291 (14)
U11U22U33U12U13U23
Co10.0348 (4)0.0239 (3)0.0222 (3)0.0011 (4)0.0053 (3)−0.0014 (3)
N10.031 (2)0.020 (2)0.019 (2)0.0002 (18)0.0058 (19)0.0023 (17)
N20.031 (3)0.025 (2)0.024 (3)−0.0094 (19)0.008 (2)0.005 (2)
N30.032 (3)0.021 (2)0.022 (2)0.0027 (18)−0.001 (2)0.0001 (19)
N40.032 (3)0.018 (2)0.022 (3)−0.0025 (18)0.000 (2)0.0005 (18)
O10.050 (3)0.0237 (18)0.027 (2)−0.0017 (17)0.0098 (19)−0.0023 (17)
O20.067 (3)0.039 (2)0.028 (2)0.0071 (19)0.017 (2)−0.0122 (18)
O30.044 (3)0.048 (2)0.021 (2)0.0008 (18)0.0092 (18)−0.0042 (18)
O40.032 (2)0.053 (2)0.029 (2)0.0013 (18)0.0013 (19)0.0115 (19)
O50.044 (3)0.0230 (18)0.032 (2)−0.0022 (17)0.001 (2)−0.0014 (18)
O60.050 (3)0.0273 (18)0.032 (2)−0.0022 (17)0.0041 (19)0.0078 (18)
O70.047 (3)0.044 (2)0.022 (2)−0.0041 (19)0.0046 (19)−0.0017 (18)
O80.055 (3)0.042 (2)0.030 (2)−0.0036 (18)0.015 (2)−0.0133 (19)
O90.032 (2)0.0422 (19)0.028 (2)0.0034 (16)0.0054 (17)0.0032 (19)
O100.045 (3)0.077 (3)0.034 (3)0.012 (2)−0.005 (2)−0.006 (2)
C10.035 (3)0.034 (3)0.027 (3)0.001 (2)−0.002 (2)−0.011 (3)
C20.024 (3)0.025 (3)0.029 (3)−0.001 (2)0.004 (2)−0.001 (2)
C30.025 (3)0.028 (3)0.016 (3)0.000 (2)0.001 (2)−0.003 (2)
C40.027 (3)0.046 (3)0.023 (3)0.006 (3)−0.005 (2)−0.002 (3)
C50.026 (3)0.026 (3)0.018 (3)0.004 (2)0.006 (2)0.000 (2)
C60.044 (4)0.025 (3)0.030 (3)0.006 (2)0.016 (3)0.003 (2)
C70.041 (4)0.023 (3)0.025 (3)−0.008 (2)0.004 (3)0.000 (2)
C80.037 (3)0.026 (3)0.014 (3)0.005 (2)0.001 (2)0.002 (2)
C90.030 (3)0.023 (3)0.020 (3)0.001 (2)−0.002 (2)0.005 (2)
C100.023 (3)0.035 (3)0.025 (3)−0.002 (2)0.004 (2)0.001 (3)
C110.032 (3)0.019 (2)0.014 (3)0.000 (2)0.001 (2)0.004 (2)
C120.030 (3)0.031 (3)0.027 (4)0.002 (2)−0.002 (3)0.002 (3)
Co1—O102.043 (4)O6—C121.258 (6)
Co1—N32.044 (4)O7—C101.321 (6)
Co1—N12.048 (4)O7—H70.8501
Co1—O92.118 (4)O8—C101.200 (5)
Co1—O12.153 (3)O9—H1W0.8500
Co1—O52.168 (4)O9—H2W0.8498
N1—C51.329 (6)O10—H3W0.8501
N1—C21.375 (6)O10—H4W0.8499
N2—C31.363 (6)C1—C21.479 (7)
N2—C51.370 (6)C2—C31.374 (6)
N2—H2A0.8600C3—C41.474 (7)
N3—C81.327 (6)C5—C61.484 (7)
N3—C111.357 (6)C6—C71.532 (6)
N4—C81.345 (6)C6—H6A0.9700
N4—C91.377 (6)C6—H6B0.9700
N4—H4A0.8600C7—C81.484 (7)
O1—C11.252 (6)C7—H7A0.9700
O2—C11.293 (6)C7—H7B0.9700
O3—C41.290 (6)C9—C111.362 (6)
O3—H30.8501C9—C101.481 (7)
O4—C41.236 (6)C11—C121.490 (6)
O5—C121.264 (6)
O10—Co1—N390.75 (16)C3—C2—N1109.5 (4)
O10—Co1—N196.21 (17)C3—C2—C1134.7 (5)
N3—Co1—N196.43 (12)N1—C2—C1115.7 (4)
O10—Co1—O9171.87 (13)N2—C3—C2105.6 (4)
N3—Co1—O993.23 (14)N2—C3—C4124.2 (4)
N1—Co1—O990.39 (15)C2—C3—C4130.1 (5)
O10—Co1—O185.88 (15)O4—C4—O3123.8 (5)
N3—Co1—O1173.42 (16)O4—C4—C3119.7 (5)
N1—Co1—O178.35 (15)O3—C4—C3116.6 (5)
O9—Co1—O190.83 (14)N1—C5—N2109.2 (4)
O10—Co1—O590.76 (16)N1—C5—C6125.2 (5)
N3—Co1—O578.52 (15)N2—C5—C6125.5 (4)
N1—Co1—O5171.47 (16)C5—C6—C7117.7 (5)
O9—Co1—O583.09 (13)C5—C6—H6A107.9
O1—Co1—O5107.14 (10)C7—C6—H6A107.9
C5—N1—C2106.9 (4)C5—C6—H6B107.9
C5—N1—Co1139.0 (4)C7—C6—H6B107.9
C2—N1—Co1114.1 (3)H6A—C6—H6B107.2
C3—N2—C5108.7 (4)C8—C7—C6115.2 (5)
C3—N2—H2A125.6C8—C7—H7A108.5
C5—N2—H2A125.6C6—C7—H7A108.5
C8—N3—C11108.3 (4)C8—C7—H7B108.5
C8—N3—Co1137.5 (4)C6—C7—H7B108.5
C11—N3—Co1114.2 (3)H7A—C7—H7B107.5
C8—N4—C9109.4 (4)N3—C8—N4108.2 (4)
C8—N4—H4A125.3N3—C8—C7126.5 (5)
C9—N4—H4A125.3N4—C8—C7125.0 (4)
C1—O1—Co1114.4 (3)C11—C9—N4104.9 (4)
C4—O3—H3109.4C11—C9—C10133.3 (5)
C12—O5—Co1113.8 (3)N4—C9—C10121.6 (5)
C10—O7—H7119.6O8—C10—O7122.7 (5)
Co1—O9—H1W121.1O8—C10—C9122.4 (5)
Co1—O9—H2W118.0O7—C10—C9115.0 (4)
H1W—O9—H2W106.7N3—C11—C9109.2 (4)
Co1—O10—H3W143.7N3—C11—C12116.8 (4)
Co1—O10—H4W115.7C9—C11—C12134.0 (5)
H3W—O10—H4W98.3O6—C12—O5125.3 (5)
O1—C1—O2125.2 (5)O6—C12—C11118.2 (5)
O1—C1—C2117.4 (4)O5—C12—C11116.5 (4)
O2—C1—C2117.4 (5)
O10—Co1—N1—C5−98.6 (6)C2—C3—C4—O4−176.2 (5)
N3—Co1—N1—C5−7.2 (6)N2—C3—C4—O3−179.1 (4)
O9—Co1—N1—C586.1 (5)C2—C3—C4—O35.5 (8)
O1—Co1—N1—C5176.9 (6)C2—N1—C5—N2−1.4 (6)
O10—Co1—N1—C282.6 (3)Co1—N1—C5—N2179.8 (4)
N3—Co1—N1—C2174.1 (3)C2—N1—C5—C6175.6 (5)
O9—Co1—N1—C2−92.6 (3)Co1—N1—C5—C6−3.3 (9)
O1—Co1—N1—C2−1.9 (3)C3—N2—C5—N12.5 (6)
O10—Co1—N3—C885.1 (6)C3—N2—C5—C6−174.4 (5)
N1—Co1—N3—C8−11.2 (6)N1—C5—C6—C752.6 (8)
O9—Co1—N3—C8−102.0 (5)N2—C5—C6—C7−131.0 (5)
O5—Co1—N3—C8175.7 (6)C5—C6—C7—C8−85.6 (5)
O10—Co1—N3—C11−92.9 (4)C11—N3—C8—N4−0.7 (6)
N1—Co1—N3—C11170.8 (3)Co1—N3—C8—N4−178.7 (4)
O9—Co1—N3—C1180.0 (3)C11—N3—C8—C7173.0 (5)
O5—Co1—N3—C11−2.2 (3)Co1—N3—C8—C7−5.0 (9)
O10—Co1—O1—C1−95.3 (4)C9—N4—C8—N3−0.1 (6)
N1—Co1—O1—C12.0 (4)C9—N4—C8—C7−173.9 (5)
O9—Co1—O1—C192.2 (4)C6—C7—C8—N356.8 (8)
O5—Co1—O1—C1175.2 (3)C6—C7—C8—N4−130.5 (5)
O10—Co1—O5—C1295.0 (4)C8—N4—C9—C110.9 (5)
N3—Co1—O5—C124.4 (4)C8—N4—C9—C10176.7 (5)
O9—Co1—O5—C12−90.3 (4)C11—C9—C10—O8178.3 (5)
O1—Co1—O5—C12−179.1 (3)N4—C9—C10—O83.8 (8)
Co1—O1—C1—O2−179.7 (4)C11—C9—C10—O7−3.0 (8)
Co1—O1—C1—C2−1.7 (6)N4—C9—C10—O7−177.4 (4)
C5—N1—C2—C3−0.2 (6)C8—N3—C11—C91.2 (6)
Co1—N1—C2—C3178.9 (3)Co1—N3—C11—C9179.8 (3)
C5—N1—C2—C1−177.5 (4)C8—N3—C11—C12−178.4 (4)
Co1—N1—C2—C11.7 (5)Co1—N3—C11—C120.2 (5)
O1—C1—C2—C3−176.3 (6)N4—C9—C11—N3−1.3 (5)
O2—C1—C2—C31.9 (9)C10—C9—C11—N3−176.4 (5)
O1—C1—C2—N10.1 (7)N4—C9—C11—C12178.2 (5)
O2—C1—C2—N1178.3 (5)C10—C9—C11—C123.1 (10)
C5—N2—C3—C2−2.5 (6)Co1—O5—C12—O6173.6 (4)
C5—N2—C3—C4−178.9 (5)Co1—O5—C12—C11−5.6 (6)
N1—C2—C3—N21.7 (6)N3—C11—C12—O6−175.4 (5)
C1—C2—C3—N2178.3 (5)C9—C11—C12—O65.1 (8)
N1—C2—C3—C4177.8 (5)N3—C11—C12—O53.8 (7)
C1—C2—C3—C4−5.7 (10)C9—C11—C12—O5−175.6 (5)
N2—C3—C4—O4−0.8 (8)
D—H···AD—HH···AD···AD—H···A
O3—H3···O20.851.652.461 (5)157
O7—H7···O60.851.722.550 (5)166
O10—H3W···O3i0.852.182.799 (5)129
N2—H2A···O6ii0.862.162.904 (5)145
N4—H4A···O5iii0.862.042.878 (5)166
O9—H1W···O4iv0.851.892.730 (5)170
O9—H2W···O7v0.852.062.834 (5)150
O10—H4W···O8vi0.852.222.958 (5)145
Table 1

Selected bond lengths (Å)

Co1—O102.043 (4)
Co1—N32.044 (4)
Co1—N12.048 (4)
Co1—O92.118 (4)
Co1—O12.153 (3)
Co1—O52.168 (4)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O20.851.652.461 (5)157
O7—H7⋯O60.851.722.550 (5)166
O10—H3W⋯O3i0.852.182.799 (5)129
N2—H2A⋯O6ii0.862.162.904 (5)145
N4—H4A⋯O5iii0.862.042.878 (5)166
O9—H1W⋯O4iv0.851.892.730 (5)170
O9—H2W⋯O7v0.852.062.834 (5)150
O10—H4W⋯O8vi0.852.222.958 (5)145

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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