| Literature DB >> 21754665 |
Abstract
In the title complex, [Cu(C(7)H(3)NO(4))(C(10)H(8)N(2)O(2))(H(2)O)]·H(2)O, the Cu(II) ion is in a slightly distorted square-pyramidal geometry. Two carboxyl-ate O atoms and one pyridine N atom from a pyridine-2,6-dicarboxyl-ate ligand chelate the Cu(II) ion, forming two stable five-membered metalla rings. One imidazole N atom from a 1-(4-carb-oxy-phen-yl)imidazole ligand and one water mol-ecule complete the five-coordination. O-H⋯O hydrogen bonds involving the coordinated water mol-ecules and carboxyl-ate groups link the complex mol-ecules into chain-containing dinuclear macrocycles. O-H⋯O hydrogen bonds involving the uncoordinated water mol-ecules link the chains into a layer extending parallel to (10[Formula: see text]).Entities:
Year: 2011 PMID: 21754665 PMCID: PMC3120502 DOI: 10.1107/S1600536811015522
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu(C7H3NO4)(C10H8N2O2)(H2O)]·H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 6749 reflections | |
| θ = 2.9–27.5° | |
| µ = 1.32 mm−1 | |
| α = 84.353 (16)° | |
| β = 85.789 (13)° | Block, blue |
| γ = 80.736 (14)° | 0.34 × 0.20 × 0.15 mm |
| Bruker APEX CCD diffractometer | 3920 independent reflections |
| Radiation source: fine-focus sealed tube | 3485 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.5°, θmin = 2.9° |
| Absorption correction: multi-scan ( | |
| 6749 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3920 reflections | (Δ/σ)max = 0.001 |
| 322 parameters | Δρmax = 0.37 e Å−3 |
| 5 restraints | Δρmin = −0.62 e Å−3 |
| Cu1 | 0.51191 (3) | 0.77853 (3) | 0.81495 (2) | 0.02775 (11) | |
| O1 | −0.5172 (2) | 0.7396 (3) | 0.42103 (17) | 0.0516 (5) | |
| N1 | 0.3000 (2) | 0.8750 (2) | 0.75900 (14) | 0.0286 (4) | |
| C1 | −0.3561 (3) | 0.6898 (3) | 0.40439 (19) | 0.0347 (5) | |
| H1 | −0.575 (4) | 0.708 (5) | 0.381 (2) | 0.076 (12)* | |
| O2 | −0.2974 (2) | 0.6052 (3) | 0.33628 (16) | 0.0533 (5) | |
| N2 | 0.0788 (2) | 0.8924 (2) | 0.67065 (13) | 0.0245 (4) | |
| C2 | −0.2492 (3) | 0.7482 (3) | 0.47641 (17) | 0.0283 (5) | |
| O3 | 0.7305 (2) | 0.3533 (2) | 0.70285 (15) | 0.0414 (4) | |
| N3 | 0.7383 (2) | 0.6954 (2) | 0.84101 (14) | 0.0244 (4) | |
| C3 | −0.0783 (3) | 0.6968 (3) | 0.46374 (18) | 0.0312 (5) | |
| H3 | −0.036 (4) | 0.627 (4) | 0.408 (2) | 0.046 (8)* | |
| O4 | 0.5460 (2) | 0.5751 (2) | 0.73733 (14) | 0.0376 (4) | |
| C4 | 0.0295 (3) | 0.7460 (3) | 0.52654 (18) | 0.0300 (5) | |
| H4 | 0.135 (4) | 0.714 (3) | 0.515 (2) | 0.038 (7)* | |
| O5 | 0.7779 (2) | 1.0466 (2) | 0.96052 (14) | 0.0392 (4) | |
| C5 | −0.0332 (3) | 0.8478 (2) | 0.60358 (16) | 0.0237 (4) | |
| O6 | 0.57541 (19) | 0.97815 (19) | 0.87486 (13) | 0.0333 (4) | |
| C6 | −0.2030 (3) | 0.9038 (3) | 0.61558 (17) | 0.0290 (4) | |
| H6 | −0.247 (3) | 0.981 (3) | 0.673 (2) | 0.039 (7)* | |
| C7 | −0.3103 (3) | 0.8539 (3) | 0.55223 (18) | 0.0305 (5) | |
| H7 | −0.418 (4) | 0.888 (3) | 0.562 (2) | 0.036 (7)* | |
| C8 | 0.2294 (3) | 0.8052 (3) | 0.69116 (17) | 0.0282 (4) | |
| H8 | 0.265 (3) | 0.706 (3) | 0.6699 (18) | 0.026 (6)* | |
| C9 | 0.1899 (3) | 1.0144 (3) | 0.78355 (18) | 0.0290 (5) | |
| H9 | 0.213 (3) | 1.084 (3) | 0.830 (2) | 0.030 (6)* | |
| C10 | 0.0526 (3) | 1.0255 (3) | 0.72996 (17) | 0.0280 (4) | |
| H10 | −0.043 (3) | 1.102 (3) | 0.726 (2) | 0.033 (7)* | |
| C11 | 0.6874 (3) | 0.4845 (3) | 0.74368 (17) | 0.0291 (5) | |
| C12 | 0.8070 (3) | 0.5506 (3) | 0.80631 (17) | 0.0255 (4) | |
| C13 | 0.9705 (3) | 0.4866 (3) | 0.82600 (19) | 0.0309 (5) | |
| H13 | 1.023 (4) | 0.383 (4) | 0.803 (2) | 0.052 (8)* | |
| C14 | 1.0569 (3) | 0.5759 (3) | 0.88262 (19) | 0.0324 (5) | |
| H14 | 1.165 (4) | 0.537 (4) | 0.895 (2) | 0.049 (8)* | |
| C15 | 0.9826 (3) | 0.7273 (3) | 0.91638 (18) | 0.0287 (4) | |
| H15 | 1.038 (3) | 0.791 (3) | 0.955 (2) | 0.037 (7)* | |
| C16 | 0.8205 (3) | 0.7846 (3) | 0.89290 (16) | 0.0240 (4) | |
| C17 | 0.7182 (3) | 0.9512 (3) | 0.91352 (17) | 0.0269 (4) | |
| O1W | 0.4032 (2) | 0.6744 (2) | 0.96552 (14) | 0.0357 (4) | |
| O2W | 0.3880 (2) | 1.2940 (2) | 0.87970 (16) | 0.0427 (4) | |
| H1W1 | 0.474 (4) | 0.658 (5) | 1.008 (2) | 0.074 (12)* | |
| H2W1 | 0.349 (4) | 0.756 (3) | 0.990 (2) | 0.055 (9)* | |
| H1W2 | 0.445 (4) | 1.203 (3) | 0.869 (2) | 0.054 (9)* | |
| H2W2 | 0.396 (4) | 1.341 (4) | 0.8208 (17) | 0.061 (11)* |
| Cu1 | 0.02014 (15) | 0.02746 (16) | 0.03696 (18) | 0.00146 (10) | −0.01098 (11) | −0.01095 (11) |
| O1 | 0.0321 (10) | 0.0655 (13) | 0.0633 (13) | 0.0001 (9) | −0.0194 (9) | −0.0361 (11) |
| N1 | 0.0232 (9) | 0.0299 (9) | 0.0334 (10) | 0.0004 (7) | −0.0105 (7) | −0.0080 (7) |
| C1 | 0.0339 (12) | 0.0319 (12) | 0.0404 (13) | −0.0037 (9) | −0.0120 (10) | −0.0084 (10) |
| O2 | 0.0403 (10) | 0.0672 (13) | 0.0592 (13) | −0.0047 (9) | −0.0134 (9) | −0.0379 (11) |
| N2 | 0.0224 (8) | 0.0254 (9) | 0.0266 (9) | −0.0013 (7) | −0.0083 (7) | −0.0049 (7) |
| C2 | 0.0292 (11) | 0.0288 (11) | 0.0283 (11) | −0.0037 (9) | −0.0113 (9) | −0.0029 (8) |
| O3 | 0.0322 (9) | 0.0394 (9) | 0.0561 (11) | 0.0020 (7) | −0.0108 (8) | −0.0277 (8) |
| N3 | 0.0204 (8) | 0.0244 (8) | 0.0293 (9) | −0.0010 (7) | −0.0051 (7) | −0.0077 (7) |
| C3 | 0.0335 (12) | 0.0317 (11) | 0.0290 (11) | −0.0005 (9) | −0.0074 (9) | −0.0092 (9) |
| O4 | 0.0268 (8) | 0.0371 (9) | 0.0522 (10) | 0.0015 (7) | −0.0155 (7) | −0.0211 (8) |
| C4 | 0.0224 (10) | 0.0351 (12) | 0.0325 (11) | 0.0003 (9) | −0.0063 (9) | −0.0073 (9) |
| O5 | 0.0319 (9) | 0.0365 (9) | 0.0534 (11) | −0.0019 (7) | −0.0107 (8) | −0.0240 (8) |
| C5 | 0.0238 (10) | 0.0247 (10) | 0.0232 (10) | −0.0031 (8) | −0.0087 (8) | −0.0012 (8) |
| O6 | 0.0265 (8) | 0.0262 (8) | 0.0488 (10) | 0.0031 (6) | −0.0151 (7) | −0.0131 (7) |
| C6 | 0.0258 (10) | 0.0341 (11) | 0.0273 (11) | 0.0003 (9) | −0.0065 (8) | −0.0074 (9) |
| C7 | 0.0214 (10) | 0.0391 (12) | 0.0318 (11) | −0.0018 (9) | −0.0070 (9) | −0.0074 (9) |
| C8 | 0.0238 (10) | 0.0287 (11) | 0.0326 (11) | 0.0021 (8) | −0.0104 (8) | −0.0084 (9) |
| C9 | 0.0278 (11) | 0.0257 (10) | 0.0340 (12) | 0.0001 (8) | −0.0097 (9) | −0.0073 (9) |
| C10 | 0.0264 (11) | 0.0259 (10) | 0.0321 (11) | 0.0006 (9) | −0.0083 (9) | −0.0075 (8) |
| C11 | 0.0248 (10) | 0.0319 (11) | 0.0327 (11) | −0.0037 (9) | −0.0055 (9) | −0.0120 (9) |
| C12 | 0.0224 (10) | 0.0255 (10) | 0.0294 (11) | −0.0021 (8) | −0.0038 (8) | −0.0077 (8) |
| C13 | 0.0244 (11) | 0.0280 (11) | 0.0397 (13) | 0.0038 (9) | −0.0053 (9) | −0.0097 (9) |
| C14 | 0.0202 (10) | 0.0355 (12) | 0.0413 (13) | 0.0017 (9) | −0.0085 (9) | −0.0071 (10) |
| C15 | 0.0250 (10) | 0.0328 (11) | 0.0303 (11) | −0.0055 (9) | −0.0074 (9) | −0.0068 (9) |
| C16 | 0.0216 (9) | 0.0242 (10) | 0.0272 (10) | −0.0030 (8) | −0.0050 (8) | −0.0060 (8) |
| C17 | 0.0229 (10) | 0.0274 (10) | 0.0314 (11) | −0.0019 (8) | −0.0043 (8) | −0.0085 (8) |
| O1W | 0.0334 (9) | 0.0336 (9) | 0.0407 (10) | 0.0007 (7) | −0.0077 (8) | −0.0119 (7) |
| O2W | 0.0458 (11) | 0.0343 (10) | 0.0467 (11) | 0.0060 (8) | −0.0110 (9) | −0.0103 (8) |
| Cu1—N1 | 1.9467 (18) | O5—C17 | 1.222 (3) |
| Cu1—N3 | 1.9076 (17) | C5—C6 | 1.391 (3) |
| Cu1—O4 | 2.0118 (16) | O6—C17 | 1.283 (3) |
| Cu1—O6 | 2.0393 (16) | C6—C7 | 1.385 (3) |
| Cu1—O1W | 2.2537 (19) | C6—H6 | 1.04 (3) |
| O1—C1 | 1.322 (3) | C7—H7 | 0.88 (3) |
| O1—H1 | 0.81 (1) | C8—H8 | 0.89 (3) |
| N1—C8 | 1.318 (3) | C9—C10 | 1.353 (3) |
| N1—C9 | 1.386 (3) | C9—H9 | 0.92 (3) |
| C1—O2 | 1.210 (3) | C10—H10 | 0.92 (3) |
| C1—C2 | 1.493 (3) | C11—C12 | 1.517 (3) |
| N2—C8 | 1.350 (3) | C12—C13 | 1.386 (3) |
| N2—C10 | 1.383 (3) | C13—C14 | 1.392 (3) |
| N2—C5 | 1.426 (3) | C13—H13 | 0.95 (3) |
| C2—C3 | 1.393 (3) | C14—C15 | 1.391 (3) |
| C2—C7 | 1.396 (3) | C14—H14 | 0.91 (3) |
| O3—C11 | 1.239 (3) | C15—C16 | 1.378 (3) |
| N3—C16 | 1.332 (3) | C15—H15 | 0.95 (3) |
| N3—C12 | 1.337 (3) | C16—C17 | 1.521 (3) |
| C3—C4 | 1.379 (3) | O1W—H1W1 | 0.82 (2) |
| C3—H3 | 0.98 (3) | O1W—H2W1 | 0.82 (2) |
| O4—C11 | 1.272 (3) | O2W—H1W2 | 0.83 (2) |
| C4—C5 | 1.391 (3) | O2W—H2W2 | 0.83 (2) |
| C4—H4 | 0.87 (3) | ||
| N3—Cu1—N1 | 167.81 (8) | C5—C6—H6 | 119.4 (16) |
| N3—Cu1—O4 | 80.11 (7) | C6—C7—C2 | 120.5 (2) |
| N1—Cu1—O4 | 95.85 (7) | C6—C7—H7 | 118.2 (18) |
| N3—Cu1—O6 | 80.22 (7) | C2—C7—H7 | 121.3 (18) |
| N1—Cu1—O6 | 100.91 (7) | N1—C8—N2 | 110.75 (19) |
| O4—Cu1—O6 | 156.95 (7) | N1—C8—H8 | 125.3 (16) |
| N3—Cu1—O1W | 96.05 (7) | N2—C8—H8 | 123.1 (16) |
| N1—Cu1—O1W | 95.97 (8) | C10—C9—N1 | 109.0 (2) |
| O4—Cu1—O1W | 99.71 (7) | C10—C9—H9 | 128.9 (16) |
| O6—Cu1—O1W | 94.19 (7) | N1—C9—H9 | 122.2 (16) |
| C1—O1—H1 | 114 (3) | C9—C10—N2 | 106.46 (19) |
| C8—N1—C9 | 106.55 (18) | C9—C10—H10 | 132.6 (17) |
| C8—N1—Cu1 | 123.09 (15) | N2—C10—H10 | 120.9 (17) |
| C9—N1—Cu1 | 130.21 (15) | O3—C11—O4 | 125.2 (2) |
| O2—C1—O1 | 123.7 (2) | O3—C11—C12 | 120.44 (19) |
| O2—C1—C2 | 121.8 (2) | O4—C11—C12 | 114.40 (18) |
| O1—C1—C2 | 114.5 (2) | N3—C12—C13 | 119.5 (2) |
| C8—N2—C10 | 107.26 (18) | N3—C12—C11 | 111.02 (18) |
| C8—N2—C5 | 125.26 (18) | C13—C12—C11 | 129.41 (19) |
| C10—N2—C5 | 127.41 (18) | C12—C13—C14 | 118.2 (2) |
| C3—C2—C7 | 119.1 (2) | C12—C13—H13 | 122 (2) |
| C3—C2—C1 | 117.1 (2) | C14—C13—H13 | 119.8 (19) |
| C7—C2—C1 | 123.8 (2) | C15—C14—C13 | 120.9 (2) |
| C16—N3—C12 | 123.10 (18) | C15—C14—H14 | 119.7 (19) |
| C16—N3—Cu1 | 118.33 (14) | C13—C14—H14 | 119.3 (19) |
| C12—N3—Cu1 | 118.58 (15) | C16—C15—C14 | 117.7 (2) |
| C4—C3—C2 | 120.8 (2) | C16—C15—H15 | 119.2 (17) |
| C4—C3—H3 | 120.8 (18) | C14—C15—H15 | 123.0 (17) |
| C2—C3—H3 | 118.4 (18) | N3—C16—C15 | 120.51 (19) |
| C11—O4—Cu1 | 115.70 (14) | N3—C16—C17 | 111.96 (18) |
| C3—C4—C5 | 119.6 (2) | C15—C16—C17 | 127.41 (19) |
| C3—C4—H4 | 117.9 (19) | O5—C17—O6 | 126.6 (2) |
| C5—C4—H4 | 122.4 (19) | O5—C17—C16 | 119.27 (19) |
| C6—C5—C4 | 120.4 (2) | O6—C17—C16 | 114.11 (18) |
| C6—C5—N2 | 120.54 (18) | Cu1—O1W—H1W1 | 110 (3) |
| C4—C5—N2 | 119.10 (19) | Cu1—O1W—H2W1 | 104 (2) |
| C17—O6—Cu1 | 114.41 (13) | H1W1—O1W—H2W1 | 96 (3) |
| C7—C6—C5 | 119.6 (2) | H1W2—O2W—H2W2 | 98 (3) |
| C7—C6—H6 | 121.0 (16) |
| H··· | ||||
| O1—H1···O3i | 0.81 (1) | 1.90 (1) | 2.710 (2) | 173 (4) |
| O1W—H1W1···O2Wii | 0.82 (2) | 2.02 (2) | 2.803 (3) | 159 (4) |
| O1W—H2W1···O5ii | 0.82 (2) | 1.92 (2) | 2.740 (2) | 177 (3) |
| O2W—H1W2···O6 | 0.83 (2) | 1.98 (2) | 2.794 (2) | 168 (3) |
| O2W—H2W2···O2iii | 0.83 (2) | 2.25 (2) | 2.986 (3) | 148 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1⋯O3i | 0.81 (1) | 1.90 (1) | 2.710 (2) | 173 (4) |
| O1 | 0.82 (2) | 2.02 (2) | 2.803 (3) | 159 (4) |
| O1 | 0.82 (2) | 1.92 (2) | 2.740 (2) | 177 (3) |
| O2 | 0.83 (2) | 1.98 (2) | 2.794 (2) | 168 (3) |
| O2 | 0.83 (2) | 2.25 (2) | 2.986 (3) | 148 (3) |
Symmetry codes: (i) ; (ii) ; (iii) .