Literature DB >> 21754665

Aqua-[1-(4-carb-oxy-phen-yl)-1H-imidazole-κN](pyridine-2,6-dicarboxyl-ato-κO,N,O)copper(II) monohydrate.

Fanzhen Kong1, Zhangyu Yu.   

Abstract

In the title complex, [Cu(C(7)H(3)NO(4))(C(10)H(8)N(2)O(2))(H(2)O)]·H(2)O, the Cu(II) ion is in a slightly distorted square-pyramidal geometry. Two carboxyl-ate O atoms and one pyridine N atom from a pyridine-2,6-dicarboxyl-ate ligand chelate the Cu(II) ion, forming two stable five-membered metalla rings. One imidazole N atom from a 1-(4-carb-oxy-phen-yl)imidazole ligand and one water mol-ecule complete the five-coordination. O-H⋯O hydrogen bonds involving the coordinated water mol-ecules and carboxyl-ate groups link the complex mol-ecules into chain-containing dinuclear macrocycles. O-H⋯O hydrogen bonds involving the uncoordinated water mol-ecules link the chains into a layer extending parallel to (10[Formula: see text]).

Entities:  

Year:  2011        PMID: 21754665      PMCID: PMC3120502          DOI: 10.1107/S1600536811015522

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the design and synthesis of compounds with metal–organic supra­molecular architectures, see: Bradshaw et al. (2005 ▶); Tian et al. (2005 ▶); Wang et al. (2009 ▶). For the use of N-containing heterocyclic carboxyl­ate ligands in metal–organic supra­molecular architectures, see: Bentiss et al. (2004 ▶); Yang et al. (2008 ▶); Zeng et al. (2006 ▶). For related structures, see: Li et al. (2008 ▶).

Experimental

Crystal data

[Cu(C7H3NO4)(C10H8N2O2)(H2O)H2O M = 452.87 Triclinic, a = 8.1638 (5) Å b = 8.2081 (5) Å c = 13.1265 (18) Å α = 84.353 (16)° β = 85.789 (13)° γ = 80.736 (14)° V = 862.43 (15) Å3 Z = 2 Mo Kα radiation μ = 1.32 mm−1 T = 293 K 0.34 × 0.20 × 0.15 mm

Data collection

Bruker APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.662, T max = 0.826 6749 measured reflections 3920 independent reflections 3485 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.096 S = 1.06 3920 reflections 322 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.37 e Å−3 Δρmin = −0.62 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811015522/hy2420sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015522/hy2420Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C7H3NO4)(C10H8N2O2)(H2O)]·H2OZ = 2
Mr = 452.87F(000) = 462
Triclinic, P1Dx = 1.744 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.1638 (5) ÅCell parameters from 6749 reflections
b = 8.2081 (5) Åθ = 2.9–27.5°
c = 13.1265 (18) ŵ = 1.32 mm1
α = 84.353 (16)°T = 293 K
β = 85.789 (13)°Block, blue
γ = 80.736 (14)°0.34 × 0.20 × 0.15 mm
V = 862.43 (15) Å3
Bruker APEX CCD diffractometer3920 independent reflections
Radiation source: fine-focus sealed tube3485 reflections with I > 2σ(I)
graphiteRint = 0.020
φ and ω scansθmax = 27.5°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→10
Tmin = 0.662, Tmax = 0.826k = −10→10
6749 measured reflectionsl = −14→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0513P)2 + 0.3344P] where P = (Fo2 + 2Fc2)/3
3920 reflections(Δ/σ)max = 0.001
322 parametersΔρmax = 0.37 e Å3
5 restraintsΔρmin = −0.62 e Å3
xyzUiso*/Ueq
Cu10.51191 (3)0.77853 (3)0.81495 (2)0.02775 (11)
O1−0.5172 (2)0.7396 (3)0.42103 (17)0.0516 (5)
N10.3000 (2)0.8750 (2)0.75900 (14)0.0286 (4)
C1−0.3561 (3)0.6898 (3)0.40439 (19)0.0347 (5)
H1−0.575 (4)0.708 (5)0.381 (2)0.076 (12)*
O2−0.2974 (2)0.6052 (3)0.33628 (16)0.0533 (5)
N20.0788 (2)0.8924 (2)0.67065 (13)0.0245 (4)
C2−0.2492 (3)0.7482 (3)0.47641 (17)0.0283 (5)
O30.7305 (2)0.3533 (2)0.70285 (15)0.0414 (4)
N30.7383 (2)0.6954 (2)0.84101 (14)0.0244 (4)
C3−0.0783 (3)0.6968 (3)0.46374 (18)0.0312 (5)
H3−0.036 (4)0.627 (4)0.408 (2)0.046 (8)*
O40.5460 (2)0.5751 (2)0.73733 (14)0.0376 (4)
C40.0295 (3)0.7460 (3)0.52654 (18)0.0300 (5)
H40.135 (4)0.714 (3)0.515 (2)0.038 (7)*
O50.7779 (2)1.0466 (2)0.96052 (14)0.0392 (4)
C5−0.0332 (3)0.8478 (2)0.60358 (16)0.0237 (4)
O60.57541 (19)0.97815 (19)0.87486 (13)0.0333 (4)
C6−0.2030 (3)0.9038 (3)0.61558 (17)0.0290 (4)
H6−0.247 (3)0.981 (3)0.673 (2)0.039 (7)*
C7−0.3103 (3)0.8539 (3)0.55223 (18)0.0305 (5)
H7−0.418 (4)0.888 (3)0.562 (2)0.036 (7)*
C80.2294 (3)0.8052 (3)0.69116 (17)0.0282 (4)
H80.265 (3)0.706 (3)0.6699 (18)0.026 (6)*
C90.1899 (3)1.0144 (3)0.78355 (18)0.0290 (5)
H90.213 (3)1.084 (3)0.830 (2)0.030 (6)*
C100.0526 (3)1.0255 (3)0.72996 (17)0.0280 (4)
H10−0.043 (3)1.102 (3)0.726 (2)0.033 (7)*
C110.6874 (3)0.4845 (3)0.74368 (17)0.0291 (5)
C120.8070 (3)0.5506 (3)0.80631 (17)0.0255 (4)
C130.9705 (3)0.4866 (3)0.82600 (19)0.0309 (5)
H131.023 (4)0.383 (4)0.803 (2)0.052 (8)*
C141.0569 (3)0.5759 (3)0.88262 (19)0.0324 (5)
H141.165 (4)0.537 (4)0.895 (2)0.049 (8)*
C150.9826 (3)0.7273 (3)0.91638 (18)0.0287 (4)
H151.038 (3)0.791 (3)0.955 (2)0.037 (7)*
C160.8205 (3)0.7846 (3)0.89290 (16)0.0240 (4)
C170.7182 (3)0.9512 (3)0.91352 (17)0.0269 (4)
O1W0.4032 (2)0.6744 (2)0.96552 (14)0.0357 (4)
O2W0.3880 (2)1.2940 (2)0.87970 (16)0.0427 (4)
H1W10.474 (4)0.658 (5)1.008 (2)0.074 (12)*
H2W10.349 (4)0.756 (3)0.990 (2)0.055 (9)*
H1W20.445 (4)1.203 (3)0.869 (2)0.054 (9)*
H2W20.396 (4)1.341 (4)0.8208 (17)0.061 (11)*
U11U22U33U12U13U23
Cu10.02014 (15)0.02746 (16)0.03696 (18)0.00146 (10)−0.01098 (11)−0.01095 (11)
O10.0321 (10)0.0655 (13)0.0633 (13)0.0001 (9)−0.0194 (9)−0.0361 (11)
N10.0232 (9)0.0299 (9)0.0334 (10)0.0004 (7)−0.0105 (7)−0.0080 (7)
C10.0339 (12)0.0319 (12)0.0404 (13)−0.0037 (9)−0.0120 (10)−0.0084 (10)
O20.0403 (10)0.0672 (13)0.0592 (13)−0.0047 (9)−0.0134 (9)−0.0379 (11)
N20.0224 (8)0.0254 (9)0.0266 (9)−0.0013 (7)−0.0083 (7)−0.0049 (7)
C20.0292 (11)0.0288 (11)0.0283 (11)−0.0037 (9)−0.0113 (9)−0.0029 (8)
O30.0322 (9)0.0394 (9)0.0561 (11)0.0020 (7)−0.0108 (8)−0.0277 (8)
N30.0204 (8)0.0244 (8)0.0293 (9)−0.0010 (7)−0.0051 (7)−0.0077 (7)
C30.0335 (12)0.0317 (11)0.0290 (11)−0.0005 (9)−0.0074 (9)−0.0092 (9)
O40.0268 (8)0.0371 (9)0.0522 (10)0.0015 (7)−0.0155 (7)−0.0211 (8)
C40.0224 (10)0.0351 (12)0.0325 (11)0.0003 (9)−0.0063 (9)−0.0073 (9)
O50.0319 (9)0.0365 (9)0.0534 (11)−0.0019 (7)−0.0107 (8)−0.0240 (8)
C50.0238 (10)0.0247 (10)0.0232 (10)−0.0031 (8)−0.0087 (8)−0.0012 (8)
O60.0265 (8)0.0262 (8)0.0488 (10)0.0031 (6)−0.0151 (7)−0.0131 (7)
C60.0258 (10)0.0341 (11)0.0273 (11)0.0003 (9)−0.0065 (8)−0.0074 (9)
C70.0214 (10)0.0391 (12)0.0318 (11)−0.0018 (9)−0.0070 (9)−0.0074 (9)
C80.0238 (10)0.0287 (11)0.0326 (11)0.0021 (8)−0.0104 (8)−0.0084 (9)
C90.0278 (11)0.0257 (10)0.0340 (12)0.0001 (8)−0.0097 (9)−0.0073 (9)
C100.0264 (11)0.0259 (10)0.0321 (11)0.0006 (9)−0.0083 (9)−0.0075 (8)
C110.0248 (10)0.0319 (11)0.0327 (11)−0.0037 (9)−0.0055 (9)−0.0120 (9)
C120.0224 (10)0.0255 (10)0.0294 (11)−0.0021 (8)−0.0038 (8)−0.0077 (8)
C130.0244 (11)0.0280 (11)0.0397 (13)0.0038 (9)−0.0053 (9)−0.0097 (9)
C140.0202 (10)0.0355 (12)0.0413 (13)0.0017 (9)−0.0085 (9)−0.0071 (10)
C150.0250 (10)0.0328 (11)0.0303 (11)−0.0055 (9)−0.0074 (9)−0.0068 (9)
C160.0216 (9)0.0242 (10)0.0272 (10)−0.0030 (8)−0.0050 (8)−0.0060 (8)
C170.0229 (10)0.0274 (10)0.0314 (11)−0.0019 (8)−0.0043 (8)−0.0085 (8)
O1W0.0334 (9)0.0336 (9)0.0407 (10)0.0007 (7)−0.0077 (8)−0.0119 (7)
O2W0.0458 (11)0.0343 (10)0.0467 (11)0.0060 (8)−0.0110 (9)−0.0103 (8)
Cu1—N11.9467 (18)O5—C171.222 (3)
Cu1—N31.9076 (17)C5—C61.391 (3)
Cu1—O42.0118 (16)O6—C171.283 (3)
Cu1—O62.0393 (16)C6—C71.385 (3)
Cu1—O1W2.2537 (19)C6—H61.04 (3)
O1—C11.322 (3)C7—H70.88 (3)
O1—H10.81 (1)C8—H80.89 (3)
N1—C81.318 (3)C9—C101.353 (3)
N1—C91.386 (3)C9—H90.92 (3)
C1—O21.210 (3)C10—H100.92 (3)
C1—C21.493 (3)C11—C121.517 (3)
N2—C81.350 (3)C12—C131.386 (3)
N2—C101.383 (3)C13—C141.392 (3)
N2—C51.426 (3)C13—H130.95 (3)
C2—C31.393 (3)C14—C151.391 (3)
C2—C71.396 (3)C14—H140.91 (3)
O3—C111.239 (3)C15—C161.378 (3)
N3—C161.332 (3)C15—H150.95 (3)
N3—C121.337 (3)C16—C171.521 (3)
C3—C41.379 (3)O1W—H1W10.82 (2)
C3—H30.98 (3)O1W—H2W10.82 (2)
O4—C111.272 (3)O2W—H1W20.83 (2)
C4—C51.391 (3)O2W—H2W20.83 (2)
C4—H40.87 (3)
N3—Cu1—N1167.81 (8)C5—C6—H6119.4 (16)
N3—Cu1—O480.11 (7)C6—C7—C2120.5 (2)
N1—Cu1—O495.85 (7)C6—C7—H7118.2 (18)
N3—Cu1—O680.22 (7)C2—C7—H7121.3 (18)
N1—Cu1—O6100.91 (7)N1—C8—N2110.75 (19)
O4—Cu1—O6156.95 (7)N1—C8—H8125.3 (16)
N3—Cu1—O1W96.05 (7)N2—C8—H8123.1 (16)
N1—Cu1—O1W95.97 (8)C10—C9—N1109.0 (2)
O4—Cu1—O1W99.71 (7)C10—C9—H9128.9 (16)
O6—Cu1—O1W94.19 (7)N1—C9—H9122.2 (16)
C1—O1—H1114 (3)C9—C10—N2106.46 (19)
C8—N1—C9106.55 (18)C9—C10—H10132.6 (17)
C8—N1—Cu1123.09 (15)N2—C10—H10120.9 (17)
C9—N1—Cu1130.21 (15)O3—C11—O4125.2 (2)
O2—C1—O1123.7 (2)O3—C11—C12120.44 (19)
O2—C1—C2121.8 (2)O4—C11—C12114.40 (18)
O1—C1—C2114.5 (2)N3—C12—C13119.5 (2)
C8—N2—C10107.26 (18)N3—C12—C11111.02 (18)
C8—N2—C5125.26 (18)C13—C12—C11129.41 (19)
C10—N2—C5127.41 (18)C12—C13—C14118.2 (2)
C3—C2—C7119.1 (2)C12—C13—H13122 (2)
C3—C2—C1117.1 (2)C14—C13—H13119.8 (19)
C7—C2—C1123.8 (2)C15—C14—C13120.9 (2)
C16—N3—C12123.10 (18)C15—C14—H14119.7 (19)
C16—N3—Cu1118.33 (14)C13—C14—H14119.3 (19)
C12—N3—Cu1118.58 (15)C16—C15—C14117.7 (2)
C4—C3—C2120.8 (2)C16—C15—H15119.2 (17)
C4—C3—H3120.8 (18)C14—C15—H15123.0 (17)
C2—C3—H3118.4 (18)N3—C16—C15120.51 (19)
C11—O4—Cu1115.70 (14)N3—C16—C17111.96 (18)
C3—C4—C5119.6 (2)C15—C16—C17127.41 (19)
C3—C4—H4117.9 (19)O5—C17—O6126.6 (2)
C5—C4—H4122.4 (19)O5—C17—C16119.27 (19)
C6—C5—C4120.4 (2)O6—C17—C16114.11 (18)
C6—C5—N2120.54 (18)Cu1—O1W—H1W1110 (3)
C4—C5—N2119.10 (19)Cu1—O1W—H2W1104 (2)
C17—O6—Cu1114.41 (13)H1W1—O1W—H2W196 (3)
C7—C6—C5119.6 (2)H1W2—O2W—H2W298 (3)
C7—C6—H6121.0 (16)
D—H···AD—HH···AD···AD—H···A
O1—H1···O3i0.81 (1)1.90 (1)2.710 (2)173 (4)
O1W—H1W1···O2Wii0.82 (2)2.02 (2)2.803 (3)159 (4)
O1W—H2W1···O5ii0.82 (2)1.92 (2)2.740 (2)177 (3)
O2W—H1W2···O60.83 (2)1.98 (2)2.794 (2)168 (3)
O2W—H2W2···O2iii0.83 (2)2.25 (2)2.986 (3)148 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O3i0.81 (1)1.90 (1)2.710 (2)173 (4)
O1W—H1W1⋯O2Wii0.82 (2)2.02 (2)2.803 (3)159 (4)
O1W—H2W1⋯O5ii0.82 (2)1.92 (2)2.740 (2)177 (3)
O2W—H1W2⋯O60.83 (2)1.98 (2)2.794 (2)168 (3)
O2W—H2W2⋯O2iii0.83 (2)2.25 (2)2.986 (3)148 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  Design, chirality, and flexibility in nanoporous molecule-based materials.

Authors:  D Bradshaw; J B Claridge; E J Cussen; T J Prior; M J Rosseinsky
Journal:  Acc Chem Res       Date:  2005-04       Impact factor: 22.384

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Chiral magnetic metal-organic frameworks of dimetal subunits: magnetism tuning by mixed-metal compositions of the solid solutions.

Authors:  Ming-Hua Zeng; Bo Wang; Xin-Yi Wang; Wei-Xiong Zhang; Xiao-Ming Chen; Song Gao
Journal:  Inorg Chem       Date:  2006-09-04       Impact factor: 5.165

  3 in total

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