| Literature DB >> 21754657 |
John C Thomas, Edward R T Tiekink, Judith A Walmsley.
Abstract
The Pd(II) atom in the complex cation of the title compound, [Entities:
Year: 2011 PMID: 21754657 PMCID: PMC3120294 DOI: 10.1107/S1600536811018125
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [PdCl(C21H16N4)]Cl | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 7657 reflections |
| θ = 2.1–30.3° | |
| µ = 1.29 mm−1 | |
| β = 105.215 (6)° | Prism, red |
| 0.10 × 0.04 × 0.04 mm | |
| Rigaku AFC12/SATURN724 diffractometer | 3296 independent reflections |
| Radiation source: fine-focus sealed tube | 2809 reflections with |
| graphite | |
| ω scans | θmax = 25.0°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 15599 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3296 reflections | (Δ/σ)max < 0.001 |
| 259 parameters | Δρmax = 3.59 e Å−3 |
| 3 restraints | Δρmin = −2.15 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Pd | 0.52238 (8) | 0.61084 (7) | −0.12448 (6) | 0.0406 (4) | |
| Cl1 | 0.3256 (3) | 0.6393 (3) | −0.2332 (2) | 0.0602 (9) | |
| Cl2 | 1.5657 (3) | 0.6930 (2) | 0.4574 (2) | 0.0521 (8) | |
| N1 | 0.5776 (9) | 0.7570 (7) | −0.0888 (7) | 0.042 (2) | |
| N2 | 0.6866 (8) | 0.5872 (7) | −0.0316 (6) | 0.037 (2) | |
| N3 | 0.5215 (8) | 0.4571 (7) | −0.1273 (6) | 0.038 (2) | |
| N4 | 1.4174 (9) | 0.4831 (8) | 0.3621 (7) | 0.044 (2) | |
| H1N | 1.469 (9) | 0.534 (5) | 0.387 (7) | 0.053* | |
| H2N | 1.428 (11) | 0.435 (5) | 0.408 (6) | 0.053* | |
| C1 | 0.5076 (12) | 0.8421 (10) | −0.1202 (9) | 0.051 (3) | |
| H1 | 0.4249 | 0.8365 | −0.1656 | 0.061* | |
| C2 | 0.5559 (14) | 0.9367 (9) | −0.0865 (10) | 0.053 (3) | |
| H2 | 0.5049 | 0.9954 | −0.1074 | 0.063* | |
| C3 | 0.6765 (15) | 0.9472 (10) | −0.0233 (10) | 0.057 (4) | |
| H3 | 0.7108 | 1.0125 | −0.0021 | 0.068* | |
| C4 | 0.7472 (13) | 0.8592 (8) | 0.0090 (9) | 0.047 (3) | |
| H4 | 0.8303 | 0.8637 | 0.0539 | 0.056* | |
| C5 | 0.6961 (11) | 0.7660 (8) | −0.0245 (8) | 0.040 (3) | |
| C6 | 0.7595 (11) | 0.6664 (8) | 0.0078 (8) | 0.037 (2) | |
| C7 | 0.8789 (11) | 0.6510 (8) | 0.0711 (8) | 0.038 (3) | |
| H7 | 0.9300 | 0.7078 | 0.0993 | 0.045* | |
| C8 | 0.9263 (10) | 0.5522 (7) | 0.0949 (8) | 0.033 (2) | |
| C9 | 0.8437 (10) | 0.4710 (8) | 0.0530 (7) | 0.032 (2) | |
| H9 | 0.8708 | 0.4029 | 0.0690 | 0.038* | |
| C10 | 0.7247 (10) | 0.4895 (8) | −0.0106 (8) | 0.035 (2) | |
| C11 | 0.6283 (9) | 0.4156 (8) | −0.0622 (8) | 0.033 (2) | |
| C12 | 0.4354 (10) | 0.3957 (10) | −0.1824 (8) | 0.043 (3) | |
| H12 | 0.3622 | 0.4250 | −0.2275 | 0.052* | |
| C13 | 0.4449 (11) | 0.2911 (11) | −0.1785 (9) | 0.051 (3) | |
| H13 | 0.3806 | 0.2501 | −0.2211 | 0.061* | |
| C14 | 0.5489 (11) | 0.2470 (9) | −0.1120 (8) | 0.043 (3) | |
| H14 | 0.5565 | 0.1751 | −0.1065 | 0.052* | |
| C15 | 0.6434 (10) | 0.3105 (9) | −0.0527 (8) | 0.038 (3) | |
| H15 | 0.7166 | 0.2822 | −0.0067 | 0.046* | |
| C16 | 1.0522 (11) | 0.5334 (8) | 0.1615 (8) | 0.036 (2) | |
| C17 | 1.0953 (11) | 0.4342 (8) | 0.1970 (8) | 0.037 (2) | |
| H17 | 1.0409 | 0.3775 | 0.1750 | 0.045* | |
| C18 | 1.2149 (10) | 0.4190 (8) | 0.2630 (8) | 0.036 (2) | |
| H18 | 1.2403 | 0.3521 | 0.2860 | 0.044* | |
| C19 | 1.2991 (10) | 0.5001 (9) | 0.2966 (8) | 0.038 (3) | |
| C20 | 1.2611 (10) | 0.5949 (8) | 0.2590 (8) | 0.033 (2) | |
| H20 | 1.3183 | 0.6504 | 0.2784 | 0.040* | |
| C21 | 1.1426 (10) | 0.6120 (8) | 0.1938 (8) | 0.035 (2) | |
| H21 | 1.1208 | 0.6791 | 0.1697 | 0.042* |
| Pd | 0.0386 (6) | 0.0509 (6) | 0.0318 (5) | 0.0157 (4) | 0.0086 (4) | 0.0086 (4) |
| Cl1 | 0.0460 (18) | 0.086 (2) | 0.0437 (17) | 0.0276 (17) | 0.0025 (14) | 0.0096 (16) |
| Cl2 | 0.0496 (17) | 0.0452 (16) | 0.0528 (18) | −0.0137 (13) | −0.0019 (14) | −0.0005 (13) |
| N1 | 0.056 (6) | 0.044 (5) | 0.031 (5) | 0.020 (5) | 0.023 (5) | 0.012 (4) |
| N2 | 0.034 (5) | 0.045 (5) | 0.033 (5) | 0.012 (4) | 0.011 (4) | 0.014 (4) |
| N3 | 0.032 (5) | 0.053 (6) | 0.030 (5) | −0.005 (4) | 0.009 (4) | 0.000 (4) |
| N4 | 0.036 (5) | 0.057 (6) | 0.035 (5) | −0.011 (5) | 0.000 (4) | −0.008 (5) |
| C1 | 0.053 (7) | 0.062 (8) | 0.041 (7) | 0.012 (6) | 0.021 (6) | 0.011 (6) |
| C2 | 0.079 (10) | 0.037 (7) | 0.051 (7) | 0.012 (6) | 0.033 (7) | 0.006 (6) |
| C3 | 0.083 (10) | 0.040 (7) | 0.057 (8) | 0.018 (6) | 0.035 (8) | 0.015 (6) |
| C4 | 0.073 (9) | 0.035 (6) | 0.036 (6) | 0.014 (6) | 0.021 (6) | 0.000 (5) |
| C5 | 0.047 (7) | 0.045 (6) | 0.029 (6) | 0.019 (5) | 0.013 (5) | 0.006 (5) |
| C6 | 0.051 (7) | 0.033 (6) | 0.033 (6) | 0.005 (5) | 0.023 (5) | 0.006 (5) |
| C7 | 0.049 (7) | 0.036 (6) | 0.033 (6) | 0.011 (5) | 0.021 (5) | 0.008 (5) |
| C8 | 0.038 (6) | 0.024 (5) | 0.038 (6) | −0.003 (4) | 0.011 (5) | −0.002 (4) |
| C9 | 0.038 (6) | 0.031 (5) | 0.027 (5) | 0.007 (4) | 0.010 (5) | 0.006 (4) |
| C10 | 0.039 (6) | 0.031 (5) | 0.032 (5) | 0.006 (4) | 0.006 (5) | 0.007 (4) |
| C11 | 0.018 (5) | 0.045 (6) | 0.034 (6) | 0.007 (4) | 0.005 (4) | 0.006 (5) |
| C12 | 0.029 (6) | 0.065 (8) | 0.035 (6) | 0.001 (5) | 0.009 (5) | 0.001 (6) |
| C13 | 0.029 (6) | 0.074 (9) | 0.043 (7) | −0.009 (6) | 0.000 (5) | −0.011 (6) |
| C14 | 0.041 (7) | 0.052 (7) | 0.038 (6) | −0.014 (5) | 0.013 (6) | −0.010 (5) |
| C15 | 0.026 (5) | 0.058 (7) | 0.034 (6) | 0.002 (5) | 0.012 (5) | −0.001 (5) |
| C16 | 0.051 (7) | 0.031 (5) | 0.031 (5) | −0.003 (5) | 0.021 (5) | −0.006 (4) |
| C17 | 0.046 (7) | 0.034 (5) | 0.031 (5) | −0.006 (5) | 0.008 (5) | −0.007 (5) |
| C18 | 0.032 (6) | 0.036 (6) | 0.036 (6) | 0.000 (5) | −0.001 (5) | −0.002 (5) |
| C19 | 0.042 (6) | 0.049 (7) | 0.026 (5) | 0.002 (5) | 0.010 (5) | −0.017 (5) |
| C20 | 0.036 (6) | 0.031 (5) | 0.030 (5) | −0.016 (4) | 0.005 (5) | −0.006 (4) |
| C21 | 0.040 (6) | 0.034 (6) | 0.034 (6) | −0.008 (4) | 0.014 (5) | 0.000 (4) |
| Pd—N1 | 2.034 (10) | C7—H7 | 0.9500 |
| Pd—N2 | 1.922 (9) | C8—C9 | 1.414 (14) |
| Pd—N3 | 2.022 (10) | C8—C16 | 1.451 (16) |
| Pd—Cl1 | 2.290 (3) | C9—C10 | 1.376 (15) |
| N1—C1 | 1.357 (15) | C9—H9 | 0.9500 |
| N1—C5 | 1.359 (15) | C10—C11 | 1.466 (15) |
| N2—C6 | 1.333 (14) | C11—C15 | 1.395 (15) |
| N2—C10 | 1.357 (13) | C12—C13 | 1.379 (17) |
| N3—C12 | 1.312 (14) | C12—H12 | 0.9500 |
| N3—C11 | 1.375 (13) | C13—C14 | 1.378 (17) |
| N4—C19 | 1.377 (14) | C13—H13 | 0.9500 |
| N4—H1N | 0.8800 (11) | C14—C15 | 1.403 (15) |
| N4—H2N | 0.8800 (10) | C14—H14 | 0.9500 |
| C1—C2 | 1.382 (19) | C15—H15 | 0.9500 |
| C1—H1 | 0.9500 | C16—C21 | 1.414 (14) |
| C2—C3 | 1.37 (2) | C16—C17 | 1.426 (15) |
| C2—H2 | 0.9500 | C17—C18 | 1.387 (15) |
| C3—C4 | 1.394 (17) | C17—H17 | 0.9500 |
| C3—H3 | 0.9500 | C18—C19 | 1.401 (15) |
| C4—C5 | 1.374 (17) | C18—H18 | 0.9500 |
| C4—H4 | 0.9500 | C19—C20 | 1.370 (15) |
| C5—C6 | 1.492 (15) | C20—C21 | 1.377 (15) |
| C6—C7 | 1.371 (16) | C20—H20 | 0.9500 |
| C7—C8 | 1.404 (15) | C21—H21 | 0.9500 |
| N2—Pd—N3 | 81.3 (4) | C9—C8—C16 | 121.2 (9) |
| N2—Pd—N1 | 80.3 (4) | C10—C9—C8 | 120.8 (9) |
| N3—Pd—N1 | 161.6 (4) | C10—C9—H9 | 119.6 |
| N2—Pd—Cl1 | 179.2 (3) | C8—C9—H9 | 119.6 |
| N3—Pd—Cl1 | 98.8 (3) | N2—C10—C9 | 119.0 (10) |
| N1—Pd—Cl1 | 99.6 (3) | N2—C10—C11 | 112.7 (9) |
| C1—N1—C5 | 119.3 (11) | C9—C10—C11 | 128.3 (9) |
| C1—N1—Pd | 126.7 (9) | N3—C11—C15 | 120.8 (10) |
| C5—N1—Pd | 114.0 (7) | N3—C11—C10 | 115.0 (9) |
| C6—N2—C10 | 122.6 (9) | C15—C11—C10 | 124.1 (9) |
| C6—N2—Pd | 119.3 (7) | N3—C12—C13 | 123.8 (11) |
| C10—N2—Pd | 118.1 (8) | N3—C12—H12 | 118.1 |
| C12—N3—C11 | 118.6 (10) | C13—C12—H12 | 118.1 |
| C12—N3—Pd | 128.7 (8) | C14—C13—C12 | 119.0 (11) |
| C11—N3—Pd | 112.7 (7) | C14—C13—H13 | 120.5 |
| C19—N4—H1N | 121 (7) | C12—C13—H13 | 120.5 |
| C19—N4—H2N | 121 (7) | C13—C14—C15 | 118.6 (12) |
| H1N—N4—H2N | 109 (8) | C13—C14—H14 | 120.7 |
| N1—C1—C2 | 120.3 (13) | C15—C14—H14 | 120.7 |
| N1—C1—H1 | 119.8 | C11—C15—C14 | 119.1 (10) |
| C2—C1—H1 | 119.8 | C11—C15—H15 | 120.5 |
| C3—C2—C1 | 121.1 (12) | C14—C15—H15 | 120.5 |
| C3—C2—H2 | 119.5 | C21—C16—C17 | 115.1 (10) |
| C1—C2—H2 | 119.5 | C21—C16—C8 | 122.2 (9) |
| C2—C3—C4 | 118.0 (13) | C17—C16—C8 | 122.6 (9) |
| C2—C3—H3 | 121.0 | C18—C17—C16 | 121.3 (10) |
| C4—C3—H3 | 121.0 | C18—C17—H17 | 119.3 |
| C5—C4—C3 | 119.7 (13) | C16—C17—H17 | 119.3 |
| C5—C4—H4 | 120.2 | C17—C18—C19 | 121.5 (10) |
| C3—C4—H4 | 120.2 | C17—C18—H18 | 119.3 |
| N1—C5—C4 | 121.6 (10) | C19—C18—H18 | 119.3 |
| N1—C5—C6 | 113.5 (10) | C20—C19—N4 | 121.9 (10) |
| C4—C5—C6 | 124.8 (11) | C20—C19—C18 | 117.6 (10) |
| N2—C6—C7 | 120.1 (10) | N4—C19—C18 | 120.4 (10) |
| N2—C6—C5 | 112.8 (10) | C19—C20—C21 | 122.0 (9) |
| C7—C6—C5 | 127.1 (11) | C19—C20—H20 | 119.0 |
| C6—C7—C8 | 120.7 (11) | C21—C20—H20 | 119.0 |
| C6—C7—H7 | 119.6 | C20—C21—C16 | 122.4 (10) |
| C8—C7—H7 | 119.6 | C20—C21—H21 | 118.8 |
| C7—C8—C9 | 116.8 (10) | C16—C21—H21 | 118.8 |
| C7—C8—C16 | 122.0 (9) | ||
| N2—Pd—N1—C1 | −176.1 (9) | C6—C7—C8—C16 | 179.9 (9) |
| N3—Pd—N1—C1 | −173.8 (9) | C7—C8—C9—C10 | 2.2 (14) |
| Cl1—Pd—N1—C1 | 3.2 (9) | C16—C8—C9—C10 | −179.6 (9) |
| N2—Pd—N1—C5 | 1.9 (7) | C6—N2—C10—C9 | −0.7 (15) |
| N3—Pd—N1—C5 | 4.2 (15) | Pd—N2—C10—C9 | 177.8 (7) |
| Cl1—Pd—N1—C5 | −178.8 (6) | C6—N2—C10—C11 | 179.7 (9) |
| N3—Pd—N2—C6 | 178.0 (8) | Pd—N2—C10—C11 | −1.8 (11) |
| N1—Pd—N2—C6 | −2.7 (7) | C8—C9—C10—N2 | −0.9 (15) |
| N3—Pd—N2—C10 | −0.5 (7) | C8—C9—C10—C11 | 178.6 (10) |
| N1—Pd—N2—C10 | 178.7 (8) | C12—N3—C11—C15 | −1.7 (14) |
| N2—Pd—N3—C12 | −176.4 (9) | Pd—N3—C11—C15 | 179.0 (7) |
| N1—Pd—N3—C12 | −178.7 (9) | C12—N3—C11—C10 | 174.7 (9) |
| Cl1—Pd—N3—C12 | 4.4 (9) | Pd—N3—C11—C10 | −4.6 (11) |
| N2—Pd—N3—C11 | 2.9 (7) | N2—C10—C11—N3 | 4.2 (13) |
| N1—Pd—N3—C11 | 0.6 (14) | C9—C10—C11—N3 | −175.3 (9) |
| Cl1—Pd—N3—C11 | −176.3 (6) | N2—C10—C11—C15 | −179.5 (9) |
| C5—N1—C1—C2 | −0.5 (15) | C9—C10—C11—C15 | 0.9 (17) |
| Pd—N1—C1—C2 | 177.4 (8) | C11—N3—C12—C13 | 0.4 (16) |
| N1—C1—C2—C3 | 1.9 (17) | Pd—N3—C12—C13 | 179.7 (8) |
| C1—C2—C3—C4 | −2.3 (17) | N3—C12—C13—C14 | 1.4 (18) |
| C2—C3—C4—C5 | 1.3 (17) | C12—C13—C14—C15 | −1.9 (17) |
| C1—N1—C5—C4 | −0.5 (15) | N3—C11—C15—C14 | 1.1 (15) |
| Pd—N1—C5—C4 | −178.7 (8) | C10—C11—C15—C14 | −174.9 (9) |
| C1—N1—C5—C6 | 177.1 (9) | C13—C14—C15—C11 | 0.7 (15) |
| Pd—N1—C5—C6 | −1.0 (11) | C7—C8—C16—C21 | −10.2 (15) |
| C3—C4—C5—N1 | 0.1 (16) | C9—C8—C16—C21 | 171.7 (9) |
| C3—C4—C5—C6 | −177.3 (10) | C7—C8—C16—C17 | 171.5 (9) |
| C10—N2—C6—C7 | 0.9 (15) | C9—C8—C16—C17 | −6.6 (15) |
| Pd—N2—C6—C7 | −177.6 (7) | C21—C16—C17—C18 | 3.5 (14) |
| C10—N2—C6—C5 | −178.7 (9) | C8—C16—C17—C18 | −178.1 (9) |
| Pd—N2—C6—C5 | 2.9 (11) | C16—C17—C18—C19 | −0.8 (16) |
| N1—C5—C6—N2 | −1.0 (12) | C17—C18—C19—C20 | −2.4 (15) |
| C4—C5—C6—N2 | 176.5 (10) | C17—C18—C19—N4 | −179.9 (9) |
| N1—C5—C6—C7 | 179.4 (9) | N4—C19—C20—C21 | −179.8 (9) |
| C4—C5—C6—C7 | −3.0 (17) | C18—C19—C20—C21 | 2.8 (15) |
| N2—C6—C7—C8 | 0.5 (15) | C19—C20—C21—C16 | 0.1 (16) |
| C5—C6—C7—C8 | 180.0 (9) | C17—C16—C21—C20 | −3.2 (14) |
| C6—C7—C8—C9 | −1.9 (14) | C8—C16—C21—C20 | 178.4 (9) |
| H··· | ||||
| N4—H1n···Cl2 | 0.88 (9) | 2.42 (7) | 3.287 (11) | 167 (8) |
| N4—H2n···Cl2i | 0.88 (7) | 2.48 (8) | 3.352 (10) | 173 (10) |
| C13—H13···Cl1ii | 0.95 | 2.61 | 3.493 (14) | 156 |
| C15—H15···Cl2iii | 0.95 | 2.56 | 3.449 (12) | 155 |
Selected bond lengths (Å)
| Pd—N1 | 2.034 (10) |
| Pd—N2 | 1.922 (9) |
| Pd—N3 | 2.022 (10) |
| Pd—Cl1 | 2.290 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N4—H1n⋯Cl2 | 0.88 (9) | 2.42 (7) | 3.287 (11) | 167 (8) |
| N4—H2n⋯Cl2i | 0.88 (7) | 2.48 (8) | 3.352 (10) | 173 (10) |
| C13—H13⋯Cl1ii | 0.95 | 2.61 | 3.493 (14) | 156 |
| C15—H15⋯Cl2iii | 0.95 | 2.56 | 3.449 (12) | 155 |
Symmetry codes: (i) ; (ii) ; (iii) .