Literature DB >> 21754657

[4'-(4-Amino-phen-yl)-2,2':6',2''-terpyridine]-chloridopalladium(II) chloride.

John C Thomas, Edward R T Tiekink, Judith A Walmsley.   

Abstract

The Pd(II) atom in the complex cation of the title compound, [n class="Chemical">PdCl(C(21)H(16)N(4))]Cl, is coordinated by three N atoms derived from the terpyridine ligand and a chloride ion, which define a distorted PdClN(3) square-planar coordination geometry. In the crystal, the presence of N-H⋯Cl hydrogen bonds involving the amino H atom and chloride anions link two cations and two anions into a four-ion aggregate via centrosymmetric eight-membered [⋯H-N-H⋯Cl](2) synthons. Layers of cations are inter-spersed with the chloride anions with stabilization provided by C-H⋯Cl inter-actions involving both Cl atoms, as well as π-π inter-actions [the closest inter-action of 3.489 (6) Å occurs between a chelate ring and a pyridyl residue].

Entities:  

Year:  2011        PMID: 21754657      PMCID: PMC3120294          DOI: 10.1107/S1600536811018125

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to metaln class="Chemical">terpyridine complexes, see: Storrier et al. (1997 ▶); Hofmeier & Schubert (2004 ▶); Eryazici et al. (2008 ▶). For the synthesis, see: Tu et al. (2007 ▶); Laine et al. (2002 ▶).

Experimental

Crystal data

[PdCl(n class="CellLine">C21H16N4)]Cl M = 501.68 Monoclinic, a = 10.853 (3) Å b = 13.151 (3) Å c = 13.654 (3) Å β = 105.215 (6)° V = 1880.5 (7) Å3 Z = 4 Mo Kα radiation μ = 1.29 mm−1 T = 98 K 0.10 × 0.04 × 0.04 mm

Data collection

Rigaku AFC12/SATURN724 diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.412, T max = 1 15599 measured reflections 3296 independent reflections 2809 reflections with I > 2σ(I) R int = 0.079

Refinement

R[F 2 > 2σ(F 2)] = 0.098 wR(F 2) = 0.239 S = 1.16 3296 reflections 259 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 3.59 e Å−3 Δρmin = −2.15 e Å−3 Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: PATTY in DIRDIF (Beurskens et al., 1992 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811018125/hb5880sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811018125/hb5880Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PdCl(C21H16N4)]ClF(000) = 1000
Mr = 501.68Dx = 1.772 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71070 Å
Hall symbol: -P 2ynCell parameters from 7657 reflections
a = 10.853 (3) Åθ = 2.1–30.3°
b = 13.151 (3) ŵ = 1.29 mm1
c = 13.654 (3) ÅT = 98 K
β = 105.215 (6)°Prism, red
V = 1880.5 (7) Å30.10 × 0.04 × 0.04 mm
Z = 4
Rigaku AFC12/SATURN724 diffractometer3296 independent reflections
Radiation source: fine-focus sealed tube2809 reflections with I > 2σ(I)
graphiteRint = 0.079
ω scansθmax = 25.0°, θmin = 2.1°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −12→11
Tmin = 0.412, Tmax = 1k = −15→15
15599 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.098Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.239H atoms treated by a mixture of independent and constrained refinement
S = 1.16w = 1/[σ2(Fo2) + (0.094P)2 + 20.7984P] where P = (Fo2 + 2Fc2)/3
3296 reflections(Δ/σ)max < 0.001
259 parametersΔρmax = 3.59 e Å3
3 restraintsΔρmin = −2.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pd0.52238 (8)0.61084 (7)−0.12448 (6)0.0406 (4)
Cl10.3256 (3)0.6393 (3)−0.2332 (2)0.0602 (9)
Cl21.5657 (3)0.6930 (2)0.4574 (2)0.0521 (8)
N10.5776 (9)0.7570 (7)−0.0888 (7)0.042 (2)
N20.6866 (8)0.5872 (7)−0.0316 (6)0.037 (2)
N30.5215 (8)0.4571 (7)−0.1273 (6)0.038 (2)
N41.4174 (9)0.4831 (8)0.3621 (7)0.044 (2)
H1N1.469 (9)0.534 (5)0.387 (7)0.053*
H2N1.428 (11)0.435 (5)0.408 (6)0.053*
C10.5076 (12)0.8421 (10)−0.1202 (9)0.051 (3)
H10.42490.8365−0.16560.061*
C20.5559 (14)0.9367 (9)−0.0865 (10)0.053 (3)
H20.50490.9954−0.10740.063*
C30.6765 (15)0.9472 (10)−0.0233 (10)0.057 (4)
H30.71081.0125−0.00210.068*
C40.7472 (13)0.8592 (8)0.0090 (9)0.047 (3)
H40.83030.86370.05390.056*
C50.6961 (11)0.7660 (8)−0.0245 (8)0.040 (3)
C60.7595 (11)0.6664 (8)0.0078 (8)0.037 (2)
C70.8789 (11)0.6510 (8)0.0711 (8)0.038 (3)
H70.93000.70780.09930.045*
C80.9263 (10)0.5522 (7)0.0949 (8)0.033 (2)
C90.8437 (10)0.4710 (8)0.0530 (7)0.032 (2)
H90.87080.40290.06900.038*
C100.7247 (10)0.4895 (8)−0.0106 (8)0.035 (2)
C110.6283 (9)0.4156 (8)−0.0622 (8)0.033 (2)
C120.4354 (10)0.3957 (10)−0.1824 (8)0.043 (3)
H120.36220.4250−0.22750.052*
C130.4449 (11)0.2911 (11)−0.1785 (9)0.051 (3)
H130.38060.2501−0.22110.061*
C140.5489 (11)0.2470 (9)−0.1120 (8)0.043 (3)
H140.55650.1751−0.10650.052*
C150.6434 (10)0.3105 (9)−0.0527 (8)0.038 (3)
H150.71660.2822−0.00670.046*
C161.0522 (11)0.5334 (8)0.1615 (8)0.036 (2)
C171.0953 (11)0.4342 (8)0.1970 (8)0.037 (2)
H171.04090.37750.17500.045*
C181.2149 (10)0.4190 (8)0.2630 (8)0.036 (2)
H181.24030.35210.28600.044*
C191.2991 (10)0.5001 (9)0.2966 (8)0.038 (3)
C201.2611 (10)0.5949 (8)0.2590 (8)0.033 (2)
H201.31830.65040.27840.040*
C211.1426 (10)0.6120 (8)0.1938 (8)0.035 (2)
H211.12080.67910.16970.042*
U11U22U33U12U13U23
Pd0.0386 (6)0.0509 (6)0.0318 (5)0.0157 (4)0.0086 (4)0.0086 (4)
Cl10.0460 (18)0.086 (2)0.0437 (17)0.0276 (17)0.0025 (14)0.0096 (16)
Cl20.0496 (17)0.0452 (16)0.0528 (18)−0.0137 (13)−0.0019 (14)−0.0005 (13)
N10.056 (6)0.044 (5)0.031 (5)0.020 (5)0.023 (5)0.012 (4)
N20.034 (5)0.045 (5)0.033 (5)0.012 (4)0.011 (4)0.014 (4)
N30.032 (5)0.053 (6)0.030 (5)−0.005 (4)0.009 (4)0.000 (4)
N40.036 (5)0.057 (6)0.035 (5)−0.011 (5)0.000 (4)−0.008 (5)
C10.053 (7)0.062 (8)0.041 (7)0.012 (6)0.021 (6)0.011 (6)
C20.079 (10)0.037 (7)0.051 (7)0.012 (6)0.033 (7)0.006 (6)
C30.083 (10)0.040 (7)0.057 (8)0.018 (6)0.035 (8)0.015 (6)
C40.073 (9)0.035 (6)0.036 (6)0.014 (6)0.021 (6)0.000 (5)
C50.047 (7)0.045 (6)0.029 (6)0.019 (5)0.013 (5)0.006 (5)
C60.051 (7)0.033 (6)0.033 (6)0.005 (5)0.023 (5)0.006 (5)
C70.049 (7)0.036 (6)0.033 (6)0.011 (5)0.021 (5)0.008 (5)
C80.038 (6)0.024 (5)0.038 (6)−0.003 (4)0.011 (5)−0.002 (4)
C90.038 (6)0.031 (5)0.027 (5)0.007 (4)0.010 (5)0.006 (4)
C100.039 (6)0.031 (5)0.032 (5)0.006 (4)0.006 (5)0.007 (4)
C110.018 (5)0.045 (6)0.034 (6)0.007 (4)0.005 (4)0.006 (5)
C120.029 (6)0.065 (8)0.035 (6)0.001 (5)0.009 (5)0.001 (6)
C130.029 (6)0.074 (9)0.043 (7)−0.009 (6)0.000 (5)−0.011 (6)
C140.041 (7)0.052 (7)0.038 (6)−0.014 (5)0.013 (6)−0.010 (5)
C150.026 (5)0.058 (7)0.034 (6)0.002 (5)0.012 (5)−0.001 (5)
C160.051 (7)0.031 (5)0.031 (5)−0.003 (5)0.021 (5)−0.006 (4)
C170.046 (7)0.034 (5)0.031 (5)−0.006 (5)0.008 (5)−0.007 (5)
C180.032 (6)0.036 (6)0.036 (6)0.000 (5)−0.001 (5)−0.002 (5)
C190.042 (6)0.049 (7)0.026 (5)0.002 (5)0.010 (5)−0.017 (5)
C200.036 (6)0.031 (5)0.030 (5)−0.016 (4)0.005 (5)−0.006 (4)
C210.040 (6)0.034 (6)0.034 (6)−0.008 (4)0.014 (5)0.000 (4)
Pd—N12.034 (10)C7—H70.9500
Pd—N21.922 (9)C8—C91.414 (14)
Pd—N32.022 (10)C8—C161.451 (16)
Pd—Cl12.290 (3)C9—C101.376 (15)
N1—C11.357 (15)C9—H90.9500
N1—C51.359 (15)C10—C111.466 (15)
N2—C61.333 (14)C11—C151.395 (15)
N2—C101.357 (13)C12—C131.379 (17)
N3—C121.312 (14)C12—H120.9500
N3—C111.375 (13)C13—C141.378 (17)
N4—C191.377 (14)C13—H130.9500
N4—H1N0.8800 (11)C14—C151.403 (15)
N4—H2N0.8800 (10)C14—H140.9500
C1—C21.382 (19)C15—H150.9500
C1—H10.9500C16—C211.414 (14)
C2—C31.37 (2)C16—C171.426 (15)
C2—H20.9500C17—C181.387 (15)
C3—C41.394 (17)C17—H170.9500
C3—H30.9500C18—C191.401 (15)
C4—C51.374 (17)C18—H180.9500
C4—H40.9500C19—C201.370 (15)
C5—C61.492 (15)C20—C211.377 (15)
C6—C71.371 (16)C20—H200.9500
C7—C81.404 (15)C21—H210.9500
N2—Pd—N381.3 (4)C9—C8—C16121.2 (9)
N2—Pd—N180.3 (4)C10—C9—C8120.8 (9)
N3—Pd—N1161.6 (4)C10—C9—H9119.6
N2—Pd—Cl1179.2 (3)C8—C9—H9119.6
N3—Pd—Cl198.8 (3)N2—C10—C9119.0 (10)
N1—Pd—Cl199.6 (3)N2—C10—C11112.7 (9)
C1—N1—C5119.3 (11)C9—C10—C11128.3 (9)
C1—N1—Pd126.7 (9)N3—C11—C15120.8 (10)
C5—N1—Pd114.0 (7)N3—C11—C10115.0 (9)
C6—N2—C10122.6 (9)C15—C11—C10124.1 (9)
C6—N2—Pd119.3 (7)N3—C12—C13123.8 (11)
C10—N2—Pd118.1 (8)N3—C12—H12118.1
C12—N3—C11118.6 (10)C13—C12—H12118.1
C12—N3—Pd128.7 (8)C14—C13—C12119.0 (11)
C11—N3—Pd112.7 (7)C14—C13—H13120.5
C19—N4—H1N121 (7)C12—C13—H13120.5
C19—N4—H2N121 (7)C13—C14—C15118.6 (12)
H1N—N4—H2N109 (8)C13—C14—H14120.7
N1—C1—C2120.3 (13)C15—C14—H14120.7
N1—C1—H1119.8C11—C15—C14119.1 (10)
C2—C1—H1119.8C11—C15—H15120.5
C3—C2—C1121.1 (12)C14—C15—H15120.5
C3—C2—H2119.5C21—C16—C17115.1 (10)
C1—C2—H2119.5C21—C16—C8122.2 (9)
C2—C3—C4118.0 (13)C17—C16—C8122.6 (9)
C2—C3—H3121.0C18—C17—C16121.3 (10)
C4—C3—H3121.0C18—C17—H17119.3
C5—C4—C3119.7 (13)C16—C17—H17119.3
C5—C4—H4120.2C17—C18—C19121.5 (10)
C3—C4—H4120.2C17—C18—H18119.3
N1—C5—C4121.6 (10)C19—C18—H18119.3
N1—C5—C6113.5 (10)C20—C19—N4121.9 (10)
C4—C5—C6124.8 (11)C20—C19—C18117.6 (10)
N2—C6—C7120.1 (10)N4—C19—C18120.4 (10)
N2—C6—C5112.8 (10)C19—C20—C21122.0 (9)
C7—C6—C5127.1 (11)C19—C20—H20119.0
C6—C7—C8120.7 (11)C21—C20—H20119.0
C6—C7—H7119.6C20—C21—C16122.4 (10)
C8—C7—H7119.6C20—C21—H21118.8
C7—C8—C9116.8 (10)C16—C21—H21118.8
C7—C8—C16122.0 (9)
N2—Pd—N1—C1−176.1 (9)C6—C7—C8—C16179.9 (9)
N3—Pd—N1—C1−173.8 (9)C7—C8—C9—C102.2 (14)
Cl1—Pd—N1—C13.2 (9)C16—C8—C9—C10−179.6 (9)
N2—Pd—N1—C51.9 (7)C6—N2—C10—C9−0.7 (15)
N3—Pd—N1—C54.2 (15)Pd—N2—C10—C9177.8 (7)
Cl1—Pd—N1—C5−178.8 (6)C6—N2—C10—C11179.7 (9)
N3—Pd—N2—C6178.0 (8)Pd—N2—C10—C11−1.8 (11)
N1—Pd—N2—C6−2.7 (7)C8—C9—C10—N2−0.9 (15)
N3—Pd—N2—C10−0.5 (7)C8—C9—C10—C11178.6 (10)
N1—Pd—N2—C10178.7 (8)C12—N3—C11—C15−1.7 (14)
N2—Pd—N3—C12−176.4 (9)Pd—N3—C11—C15179.0 (7)
N1—Pd—N3—C12−178.7 (9)C12—N3—C11—C10174.7 (9)
Cl1—Pd—N3—C124.4 (9)Pd—N3—C11—C10−4.6 (11)
N2—Pd—N3—C112.9 (7)N2—C10—C11—N34.2 (13)
N1—Pd—N3—C110.6 (14)C9—C10—C11—N3−175.3 (9)
Cl1—Pd—N3—C11−176.3 (6)N2—C10—C11—C15−179.5 (9)
C5—N1—C1—C2−0.5 (15)C9—C10—C11—C150.9 (17)
Pd—N1—C1—C2177.4 (8)C11—N3—C12—C130.4 (16)
N1—C1—C2—C31.9 (17)Pd—N3—C12—C13179.7 (8)
C1—C2—C3—C4−2.3 (17)N3—C12—C13—C141.4 (18)
C2—C3—C4—C51.3 (17)C12—C13—C14—C15−1.9 (17)
C1—N1—C5—C4−0.5 (15)N3—C11—C15—C141.1 (15)
Pd—N1—C5—C4−178.7 (8)C10—C11—C15—C14−174.9 (9)
C1—N1—C5—C6177.1 (9)C13—C14—C15—C110.7 (15)
Pd—N1—C5—C6−1.0 (11)C7—C8—C16—C21−10.2 (15)
C3—C4—C5—N10.1 (16)C9—C8—C16—C21171.7 (9)
C3—C4—C5—C6−177.3 (10)C7—C8—C16—C17171.5 (9)
C10—N2—C6—C70.9 (15)C9—C8—C16—C17−6.6 (15)
Pd—N2—C6—C7−177.6 (7)C21—C16—C17—C183.5 (14)
C10—N2—C6—C5−178.7 (9)C8—C16—C17—C18−178.1 (9)
Pd—N2—C6—C52.9 (11)C16—C17—C18—C19−0.8 (16)
N1—C5—C6—N2−1.0 (12)C17—C18—C19—C20−2.4 (15)
C4—C5—C6—N2176.5 (10)C17—C18—C19—N4−179.9 (9)
N1—C5—C6—C7179.4 (9)N4—C19—C20—C21−179.8 (9)
C4—C5—C6—C7−3.0 (17)C18—C19—C20—C212.8 (15)
N2—C6—C7—C80.5 (15)C19—C20—C21—C160.1 (16)
C5—C6—C7—C8180.0 (9)C17—C16—C21—C20−3.2 (14)
C6—C7—C8—C9−1.9 (14)C8—C16—C21—C20178.4 (9)
D—H···AD—HH···AD···AD—H···A
N4—H1n···Cl20.88 (9)2.42 (7)3.287 (11)167 (8)
N4—H2n···Cl2i0.88 (7)2.48 (8)3.352 (10)173 (10)
C13—H13···Cl1ii0.952.613.493 (14)156
C15—H15···Cl2iii0.952.563.449 (12)155
Table 1

Selected bond lengths (Å)

Pd—N12.034 (10)
Pd—N21.922 (9)
Pd—N32.022 (10)
Pd—Cl12.290 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H1n⋯Cl20.88 (9)2.42 (7)3.287 (11)167 (8)
N4—H2n⋯Cl2i0.88 (7)2.48 (8)3.352 (10)173 (10)
C13—H13⋯Cl1ii0.952.613.493 (14)156
C15—H15⋯Cl2iii0.952.563.449 (12)155

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

Review 1.  Recent developments in the supramolecular chemistry of terpyridine-metal complexes.

Authors:  Harald Hofmeier; Ulrich S Schubert
Journal:  Chem Soc Rev       Date:  2004-07-15       Impact factor: 54.564

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  A new class of functionalized terpyridyl ligands as building blocks for photosensitized supramolecular architectures. Synthesis, structural, and electronic characterizations.

Authors:  Philippe Lainé; Fethi Bedioui; Philippe Ochsenbein; Valérie Marvaud; Michel Bonin; Edmond Amouyal
Journal:  J Am Chem Soc       Date:  2002-02-20       Impact factor: 15.419

Review 4.  Square-planar Pd(II), Pt(II), and Au(III) terpyridine complexes: their syntheses, physical properties, supramolecular constructs, and biomedical activities.

Authors:  Ibrahim Eryazici; Charles N Moorefield; George R Newkome
Journal:  Chem Rev       Date:  2008-06       Impact factor: 60.622

  4 in total

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