Literature DB >> 21754633

Poly[[triaqua-(μ(3)-4-oxidopyridine-2,6-dicarboxyl-ato)holmium(III)] mono-hydrate].

Zhu-Qing Gao, Dong-Yu Lv, Jin-Zhong Gu, Hong-Jin Li.   

Abstract

In the title coordination polymer, {[n class="Chemical">Ho(C(7)H(2)NO(5))(H(2)O)(3)]·H(2)O}(n), the Ho(III) atom is eight-coordinated by a tridentate 4-oxidopyridine-2,6-dicarboxyl-ate trianion, two monodentate anions and three water mol-ecules, forming a distorted bicapped trigonal-prismatic HoNO(7) coordination geometry. The anions bridge adjacent Ho(III) ions into double chains. Adjacent chains are further connected into sheets. O-H⋯O hydrogen bonds involving both coordinated and uncoordinated water mol-ecules generate a three-dimensional supra-molecular framework.

Entities:  

Year:  2011        PMID: 21754633      PMCID: PMC3120484          DOI: 10.1107/S1600536811016953

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures and properties of lanthanide coordination compounds, see: Wang et al. (2007 ▶); Lv et al. (2010 ▶); Gao et al. (2006 ▶). For bond lengths and angles in other complexes with eight-coordinate n class="Chemical">HoIII, see: Wang et al. (2007 ▶); Munoz et al. (2005 ▶).

Experimental

Crystal data

[Ho(n class="CellLine">C7H2NO5)(H2O)3]·H2O M = 417.09 Monoclinic, a = 9.879 (5) Å b = 7.557 (4) Å c = 15.386 (8) Å β = 105.386 (5)° V = 1107.5 (9) Å3 Z = 4 Mo Kα radiation μ = 7.19 mm−1 T = 296 K 0.32 × 0.29 × 0.26 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.207, T max = 0.257 4776 measured reflections 2003 independent reflections 1646 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.021 wR(F 2) = 0.047 S = 1.02 2003 reflections 196 parameters 12 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.71 e Å−3 Δρmin = −0.54 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811016953/sj5136sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811016953/sj5136Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ho(C7H2NO5)(H2O)3]·H2OF(000) = 792
Mr = 417.09Dx = 2.502 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2y/nCell parameters from 2292 reflections
a = 9.879 (5) Åθ = 2.2–28.2°
b = 7.557 (4) ŵ = 7.19 mm1
c = 15.386 (8) ÅT = 296 K
β = 105.386 (5)°Block, colorless
V = 1107.5 (9) Å30.32 × 0.29 × 0.26 mm
Z = 4
Bruker APEXII CCD diffractometer2003 independent reflections
Radiation source: fine-focus sealed tube1646 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 25.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −11→7
Tmin = 0.207, Tmax = 0.257k = −8→9
4776 measured reflectionsl = −16→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.021H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.047w = 1/[σ2(Fo2) + (0.0176P)2] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.002
2003 reflectionsΔρmax = 0.71 e Å3
196 parametersΔρmin = −0.54 e Å3
12 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0119 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ho10.501337 (17)0.82185 (2)0.747304 (11)0.01332 (10)
C10.7829 (4)0.5891 (5)0.8379 (3)0.0184 (9)
C20.7250 (4)0.6133 (5)0.9175 (3)0.0158 (9)
C30.7940 (4)0.5582 (5)1.0018 (3)0.0172 (9)
H30.87800.49631.01120.021*
C40.7379 (4)0.5951 (5)1.0743 (2)0.0163 (9)
C50.6087 (4)0.6828 (5)1.0537 (3)0.0193 (9)
H50.56520.70731.09910.023*
C60.5460 (4)0.7328 (5)0.9665 (3)0.0157 (9)
C70.4083 (4)0.8304 (5)0.9374 (3)0.0162 (9)
H1W0.613 (6)1.087 (8)0.8854 (11)0.08 (2)*
H2W0.661 (5)1.128 (7)0.806 (3)0.08 (2)*
H3W0.332 (5)0.547 (8)0.7874 (18)0.09 (2)*
H4W0.313 (4)0.523 (6)0.6913 (15)0.040 (15)*
H5W0.484 (6)0.5513 (17)0.606 (4)0.08 (2)*
H6W0.524 (8)0.714 (7)0.569 (3)0.12 (3)*
H7W0.1510 (15)0.841 (6)0.945 (3)0.057 (19)*
H8W0.032 (5)0.745 (8)0.888 (4)0.16 (4)*
N10.6032 (3)0.7004 (4)0.8981 (2)0.0151 (7)
O10.7200 (3)0.6723 (4)0.76661 (19)0.0274 (8)
O20.8899 (3)0.4962 (4)0.84514 (18)0.0234 (7)
O30.3689 (3)0.8732 (4)0.85503 (18)0.0201 (6)
O40.3418 (3)0.8625 (4)0.99379 (18)0.0249 (7)
O50.8051 (3)0.5493 (4)1.15748 (17)0.0200 (6)
O60.6030 (3)1.0722 (4)0.8286 (2)0.0315 (8)
O70.3636 (3)0.5656 (4)0.7411 (2)0.0295 (8)
O80.4963 (4)0.6642 (4)0.6113 (2)0.0255 (7)
O90.0620 (4)0.8221 (4)0.9302 (3)0.0392 (9)
U11U22U33U12U13U23
Ho10.01235 (13)0.01734 (13)0.01046 (14)0.00009 (7)0.00339 (8)0.00057 (8)
C10.016 (2)0.024 (2)0.014 (2)0.0019 (17)0.0032 (17)−0.0012 (17)
C20.015 (2)0.018 (2)0.014 (2)0.0028 (16)0.0033 (17)−0.0011 (17)
C30.016 (2)0.018 (2)0.017 (2)0.0040 (16)0.0039 (17)0.0012 (16)
C40.017 (2)0.019 (2)0.013 (2)−0.0047 (16)0.0028 (17)0.0022 (17)
C50.019 (2)0.022 (2)0.019 (2)−0.0011 (16)0.0079 (18)0.0022 (17)
C60.016 (2)0.017 (2)0.014 (2)0.0005 (16)0.0049 (17)0.0004 (16)
C70.016 (2)0.015 (2)0.018 (2)−0.0025 (15)0.0059 (18)−0.0032 (16)
N10.0145 (18)0.0198 (19)0.0126 (18)0.0011 (13)0.0063 (14)0.0005 (13)
O10.0270 (17)0.044 (2)0.0138 (16)0.0158 (14)0.0108 (14)0.0074 (13)
O20.0244 (17)0.0273 (18)0.0196 (16)0.0151 (13)0.0076 (13)0.0013 (13)
O30.0150 (15)0.0300 (17)0.0150 (16)0.0057 (12)0.0033 (12)0.0029 (12)
O40.0211 (16)0.0410 (19)0.0151 (16)0.0065 (13)0.0092 (13)0.0003 (13)
O50.0158 (15)0.0295 (17)0.0124 (15)−0.0036 (12)−0.0005 (12)0.0065 (12)
O60.036 (2)0.041 (2)0.021 (2)−0.0177 (15)0.0143 (16)−0.0087 (15)
O70.0341 (19)0.036 (2)0.0202 (18)−0.0165 (14)0.0105 (16)−0.0040 (15)
O80.036 (2)0.0232 (19)0.0186 (18)−0.0012 (14)0.0098 (15)−0.0031 (13)
O90.027 (2)0.029 (2)0.059 (3)−0.0001 (15)0.0072 (19)0.0033 (18)
Ho1—O5i2.279 (3)C5—C61.373 (5)
Ho1—O62.342 (3)C5—H50.9300
Ho1—O72.354 (3)C6—N11.341 (5)
Ho1—O12.386 (3)C6—C71.508 (5)
Ho1—O2ii2.393 (3)C7—O41.243 (5)
Ho1—O82.397 (3)C7—O31.265 (5)
Ho1—O32.400 (3)O2—Ho1iii2.393 (3)
Ho1—N12.450 (3)O5—Ho1iv2.279 (3)
C1—O21.249 (5)O6—H1W0.860 (10)
C1—O11.275 (5)O6—H2W0.858 (10)
C1—C21.493 (5)O7—H3W0.865 (10)
C2—N11.334 (5)O7—H4W0.861 (10)
C2—C31.361 (5)O8—H5W0.862 (10)
C3—C41.399 (5)O8—H6W0.861 (10)
C3—H30.9300O9—H7W0.860 (10)
C4—O51.322 (4)O9—H8W0.861 (10)
C4—C51.398 (5)
O5i—Ho1—O698.86 (11)C3—C2—C1122.7 (3)
O5i—Ho1—O786.39 (12)C2—C3—C4119.7 (4)
O6—Ho1—O7147.96 (12)C2—C3—H3120.2
O5i—Ho1—O1150.97 (10)C4—C3—H3120.2
O6—Ho1—O194.04 (12)O5—C4—C5122.5 (4)
O7—Ho1—O196.31 (12)O5—C4—C3121.1 (4)
O5i—Ho1—O2ii81.27 (10)C5—C4—C3116.5 (4)
O6—Ho1—O2ii71.09 (11)C6—C5—C4119.9 (4)
O7—Ho1—O2ii140.78 (10)C6—C5—H5120.0
O1—Ho1—O2ii78.49 (10)C4—C5—H5120.0
O5i—Ho1—O882.29 (11)N1—C6—C5122.8 (4)
O6—Ho1—O8140.74 (12)N1—C6—C7113.0 (3)
O7—Ho1—O871.19 (12)C5—C6—C7124.2 (4)
O1—Ho1—O871.43 (11)O4—C7—O3124.8 (4)
O2ii—Ho1—O870.33 (11)O4—C7—C6119.4 (4)
O5i—Ho1—O379.50 (10)O3—C7—C6115.8 (3)
O6—Ho1—O374.68 (11)C2—N1—C6117.2 (3)
O7—Ho1—O375.28 (11)C2—N1—Ho1121.0 (3)
O1—Ho1—O3129.20 (9)C6—N1—Ho1121.4 (2)
O2ii—Ho1—O3137.27 (9)C1—O1—Ho1124.0 (2)
O8—Ho1—O3142.60 (11)C1—O2—Ho1iii139.4 (3)
O5i—Ho1—N1143.51 (10)C7—O3—Ho1124.8 (2)
O6—Ho1—N177.69 (12)C4—O5—Ho1iv127.1 (2)
O7—Ho1—N179.53 (11)Ho1—O6—H1W124 (3)
O1—Ho1—N164.77 (10)Ho1—O6—H2W115 (3)
O2ii—Ho1—N1129.28 (10)H1W—O6—H2W116 (2)
O8—Ho1—N1123.29 (11)Ho1—O7—H3W116 (3)
O3—Ho1—N164.44 (10)Ho1—O7—H4W123 (3)
O2—C1—O1124.2 (4)H3W—O7—H4W114.8 (19)
O2—C1—C2119.7 (3)Ho1—O8—H5W123 (3)
O1—C1—C2116.1 (3)Ho1—O8—H6W120 (4)
N1—C2—C3123.9 (4)H5W—O8—H6W115.3 (19)
N1—C2—C1113.4 (3)H7W—O9—H8W116 (2)
O2—C1—C2—N1−173.7 (4)O3—Ho1—N1—C2−179.5 (3)
O1—C1—C2—N18.7 (5)O5i—Ho1—N1—C6−15.3 (4)
O2—C1—C2—C39.1 (6)O6—Ho1—N1—C672.9 (3)
O1—C1—C2—C3−168.6 (4)O7—Ho1—N1—C6−84.4 (3)
N1—C2—C3—C4−1.0 (6)O1—Ho1—N1—C6173.5 (3)
C1—C2—C3—C4175.9 (4)O2ii—Ho1—N1—C6125.6 (3)
C2—C3—C4—O5−177.4 (4)O8—Ho1—N1—C6−143.5 (3)
C2—C3—C4—C52.3 (6)O3—Ho1—N1—C6−5.8 (3)
O5—C4—C5—C6177.7 (4)O2—C1—O1—Ho1172.6 (3)
C3—C4—C5—C6−2.0 (6)C2—C1—O1—Ho1−9.9 (5)
C4—C5—C6—N10.3 (6)O5i—Ho1—O1—C1−163.5 (3)
C4—C5—C6—C7−178.9 (4)O6—Ho1—O1—C180.1 (3)
N1—C6—C7—O4177.2 (3)O7—Ho1—O1—C1−69.5 (3)
C5—C6—C7—O4−3.4 (6)O2ii—Ho1—O1—C1149.8 (3)
N1—C6—C7—O3−2.4 (5)O8—Ho1—O1—C1−137.3 (3)
C5—C6—C7—O3176.9 (4)O3—Ho1—O1—C16.6 (4)
C3—C2—N1—C6−0.8 (6)N1—Ho1—O1—C15.7 (3)
C1—C2—N1—C6−178.0 (3)O1—C1—O2—Ho1iii−28.4 (7)
C3—C2—N1—Ho1173.2 (3)C2—C1—O2—Ho1iii154.1 (3)
C1—C2—N1—Ho1−4.0 (5)O4—C7—O3—Ho1177.4 (3)
C5—C6—N1—C21.1 (6)C6—C7—O3—Ho1−3.0 (5)
C7—C6—N1—C2−179.6 (3)O5i—Ho1—O3—C7178.8 (3)
C5—C6—N1—Ho1−172.8 (3)O6—Ho1—O3—C7−78.9 (3)
C7—C6—N1—Ho16.5 (4)O7—Ho1—O3—C789.8 (3)
O5i—Ho1—N1—C2171.0 (3)O1—Ho1—O3—C73.6 (3)
O6—Ho1—N1—C2−100.7 (3)O2ii—Ho1—O3—C7−116.6 (3)
O7—Ho1—N1—C2101.9 (3)O8—Ho1—O3—C7116.6 (3)
O1—Ho1—N1—C2−0.2 (3)N1—Ho1—O3—C74.5 (3)
O2ii—Ho1—N1—C2−48.1 (3)C5—C4—O5—Ho1iv−106.4 (4)
O8—Ho1—N1—C242.8 (3)C3—C4—O5—Ho1iv73.3 (4)
D—H···AD—HH···AD···AD—H···A
O9—H8W···O2v0.86 (1)2.33 (4)3.080 (5)145 (6)
O9—H7W···O40.86 (1)1.84 (1)2.693 (5)170 (5)
O8—H6W···O9vi0.86 (1)2.28 (3)3.026 (5)145 (5)
O8—H5W···O9vii0.86 (1)1.84 (2)2.689 (5)168 (5)
O7—H4W···O3vii0.86 (1)2.08 (3)2.788 (4)139 (4)
O7—H3W···O5viii0.87 (1)1.92 (3)2.711 (4)152 (4)
O6—H2W···O1ii0.86 (1)1.85 (2)2.671 (4)159 (5)
O6—H1W···O4ix0.86 (1)1.83 (1)2.687 (4)171 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O9—H8W⋯O2i0.86 (1)2.33 (4)3.080 (5)145 (6)
O9—H7W⋯O40.86 (1)1.84 (1)2.693 (5)170 (5)
O8—H6W⋯O9ii0.86 (1)2.28 (3)3.026 (5)145 (5)
O8—H5W⋯O9iii0.86 (1)1.84 (2)2.689 (5)168 (5)
O7—H4W⋯O3iii0.86 (1)2.08 (3)2.788 (4)139 (4)
O7—H3W⋯O5iv0.87 (1)1.92 (3)2.711 (4)152 (4)
O6—H2W⋯O1v0.86 (1)1.85 (2)2.671 (4)159 (5)
O6—H1W⋯O4vi0.86 (1)1.83 (1)2.687 (4)171 (5)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and characterization of metal-organic frameworks based on 4-hydroxypyridine-2,6-dicarboxylic acid and pyridine-2,6-dicarboxylic acid ligands.

Authors:  Hong-Ling Gao; Long Yi; Bin Zhao; Xiao-Qing Zhao; Peng Cheng; Dai-Zheng Liao; Shi-Ping Yan
Journal:  Inorg Chem       Date:  2006-07-24       Impact factor: 5.165

3.  Poly[[triaqua-(μ(3)-4-oxidopyridine-2,6-dicarboxyl-ato)europium(III)] monohydrate].

Authors:  Dong-Yu Lv; Zhu-Qing Gao; Jin-Zhong Gu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-30
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