Literature DB >> 21754619

trans-Bis(3-hy-droxy-pyridine-κN)diiodidoplatinum(II) dimethyl sulfoxide disolvate.

Fazlul Huq, Muhammed Danish, Wojciech Starosta, Janusz Leciejewicz.   

Abstract

In the title compound, [PtI(2)(C(5)H(5)NO)(2)]·2(CH(3))(2)SO, the Pt(II) ion lies on an inversion center and is coordinated in a slightly distorted square-planar environment by two trans iodide ligands and two pyridine N atoms. In the crystal, complex mol-ecules and solvent dimethyl sulfoxide mol-ecules are linked by inter-molecular O-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 21754619      PMCID: PMC3120409          DOI: 10.1107/S1600536811015893

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the results of activity, cell uptake and DNA binding studies of some trans-planar platinum complexes, see: Farrell et al. (1992 ▶); Bierbach et al. (1999 ▶); Huq et al. (2004 ▶); Daghriri et al. (2004 ▶); Chowdhury et al. (2005 ▶). For the structure of trans-dichloridoplatinum(II), see: Beusichem & Farrell (1992 ▶).

Experimental

Crystal data

[PtI2(C5H5NO)2]·2C2H6OS M = 795.35 Triclinic, a = 6.0870 (12) Å b = 7.8070 (16) Å c = 12.305 (3) Å α = 76.52 (3)° β = 82.95 (3)° γ = 81.87 (3)° V = 560.5 (2) Å3 Z = 1 Mo Kα radiation μ = 9.22 mm−1 T = 293 K 0.19 × 0.15 × 0.05 mm

Data collection

Kuma KM-4 four-circle diffractometer Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008) ▶ T min = 0.091, T max = 0.467 3570 measured reflections 3281 independent reflections 2568 reflections with I > 2σ(I) R int = 0.027 3 standard reflections every 200 reflections intensity decay: 25.2%

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.114 S = 1.07 3281 reflections 118 parameters H-atom parameters constrained Δρmax = 1.59 e Å−3 Δρmin = −2.75 e Å−3 Data collection: KM-4 Software (Kuma, 1996 ▶); cell refinement: KM-4 Software; data reduction: DATAPROC (Kuma, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811015893/lh5232sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015893/lh5232Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PtI2(C5H5NO)2]·2C2H6OSZ = 1
Mr = 795.35F(000) = 368
Triclinic, P1Dx = 2.356 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.0870 (12) ÅCell parameters from 25 reflections
b = 7.8070 (16) Åθ = 6–15°
c = 12.305 (3) ŵ = 9.22 mm1
α = 76.52 (3)°T = 293 K
β = 82.95 (3)°Plate, pale yellow
γ = 81.87 (3)°0.19 × 0.15 × 0.05 mm
V = 560.5 (2) Å3
Kuma KM-4 four-circle diffractometer2568 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.027
graphiteθmax = 30.1°, θmin = 1.7°
profile data from ω/2θ scansh = 0→8
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008)k = −10→10
Tmin = 0.091, Tmax = 0.467l = −17→17
3570 measured reflections3 standard reflections every 200 reflections
3281 independent reflections intensity decay: 25.2%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0739P)2 + 0.7284P] where P = (Fo2 + 2Fc2)/3
3281 reflections(Δ/σ)max < 0.001
118 parametersΔρmax = 1.59 e Å3
0 restraintsΔρmin = −2.75 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pt10.50000.50000.50000.03310 (11)
I10.52440 (7)0.68468 (5)0.64805 (4)0.04702 (13)
S10.9980 (3)0.2348 (2)0.93997 (17)0.0497 (4)
N10.6905 (8)0.2937 (6)0.5856 (4)0.0358 (9)
O10.6176 (9)−0.0245 (7)0.8443 (5)0.0581 (14)
H10.7052−0.09920.88050.087*
O21.1336 (10)0.2639 (7)1.0279 (5)0.0606 (14)
C20.6050 (10)0.1983 (8)0.6833 (5)0.0407 (12)
H20.45730.22930.70800.049*
C30.7252 (10)0.0565 (7)0.7490 (5)0.0385 (11)
C60.9025 (10)0.2500 (8)0.5501 (6)0.0425 (13)
H60.96290.31510.48260.051*
C40.9432 (11)0.0105 (8)0.7117 (6)0.0449 (13)
H41.0283−0.08570.75280.054*
C51.0354 (11)0.1105 (9)0.6109 (6)0.0470 (14)
H51.18350.08370.58520.056*
C111.0277 (16)0.4169 (11)0.8257 (7)0.063 (2)
H11A0.97490.52500.85000.095*
H11B0.94230.40730.76730.095*
H11C1.18190.41760.79780.095*
C120.7179 (15)0.2967 (17)0.9862 (10)0.087 (3)
H12A0.67640.21721.05550.130*
H12B0.62300.29110.93060.130*
H12C0.70200.41560.99760.130*
U11U22U33U12U13U23
Pt10.02968 (15)0.02872 (14)0.03610 (16)0.00271 (9)−0.00194 (10)−0.00172 (10)
I10.0506 (2)0.0420 (2)0.0489 (3)0.00216 (18)−0.00824 (19)−0.01362 (18)
S10.0558 (9)0.0362 (7)0.0553 (10)−0.0041 (6)−0.0098 (8)−0.0051 (7)
N10.039 (2)0.0284 (19)0.036 (2)0.0004 (17)−0.0004 (18)−0.0029 (17)
O10.048 (3)0.055 (3)0.057 (3)−0.006 (2)−0.005 (2)0.017 (2)
O20.070 (3)0.047 (3)0.063 (3)−0.002 (2)−0.027 (3)0.000 (2)
C20.035 (3)0.037 (3)0.045 (3)0.006 (2)−0.006 (2)−0.003 (2)
C30.040 (3)0.030 (2)0.042 (3)−0.003 (2)−0.003 (2)−0.002 (2)
C60.037 (3)0.040 (3)0.046 (3)0.004 (2)−0.001 (2)−0.006 (2)
C40.044 (3)0.040 (3)0.048 (3)0.004 (2)−0.012 (3)−0.007 (3)
C50.036 (3)0.050 (3)0.051 (4)0.008 (2)−0.004 (2)−0.011 (3)
C110.082 (6)0.053 (4)0.045 (4)0.006 (4)−0.003 (4)0.000 (3)
C120.052 (5)0.111 (8)0.099 (8)−0.030 (5)0.011 (5)−0.024 (7)
Pt1—N1i2.007 (5)C3—C41.376 (9)
Pt1—N12.007 (5)C6—C51.385 (8)
Pt1—I12.6021 (8)C6—H60.9300
Pt1—I1i2.6021 (8)C4—C51.402 (10)
S1—O21.514 (6)C4—H40.9300
S1—C111.763 (8)C5—H50.9300
S1—C121.767 (10)C11—H11A0.9600
N1—C61.334 (7)C11—H11B0.9600
N1—C21.345 (8)C11—H11C0.9600
O1—C31.336 (8)C12—H12A0.9600
O1—H10.8200C12—H12B0.9600
C2—C31.383 (8)C12—H12C0.9600
C2—H20.9300
N1i—Pt1—N1179.999 (1)N1—C6—H6119.0
N1i—Pt1—I189.13 (15)C5—C6—H6119.0
N1—Pt1—I190.87 (15)C3—C4—C5119.1 (6)
N1i—Pt1—I1i90.87 (15)C3—C4—H4120.5
N1—Pt1—I1i89.13 (15)C5—C4—H4120.5
I1—Pt1—I1i180.0C6—C5—C4119.0 (6)
O2—S1—C11105.5 (4)C6—C5—H5120.5
O2—S1—C12105.1 (5)C4—C5—H5120.5
C11—S1—C1297.6 (5)S1—C11—H11A109.5
C6—N1—C2118.5 (5)S1—C11—H11B109.5
C6—N1—Pt1122.1 (4)H11A—C11—H11B109.5
C2—N1—Pt1119.5 (4)S1—C11—H11C109.5
C3—O1—H1109.5H11A—C11—H11C109.5
N1—C2—C3123.5 (5)H11B—C11—H11C109.5
N1—C2—H2118.3S1—C12—H12A109.5
C3—C2—H2118.3S1—C12—H12B109.5
O1—C3—C4125.5 (5)H12A—C12—H12B109.5
O1—C3—C2116.5 (6)S1—C12—H12C109.5
C4—C3—C2118.0 (6)H12A—C12—H12C109.5
N1—C6—C5121.9 (6)H12B—C12—H12C109.5
D—H···AD—HH···AD···AD—H···A
O1—H1···O2ii0.821.772.583 (7)173
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O2i0.821.772.583 (7)173

Symmetry code: (i) .

  6 in total

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3.  Studies on activities, cell up take and DNA binding of four multinuclear complexes of the form: [[trans-PtCl(NH(3))(2)](2)mu-[trans-Pd(NH(3))(2)-(H(2)N(CH(2))(n)NH(2))(2)]]Cl(4) where n=4-7.

Authors:  Hassan Daghriri; Fazlul Huq; Philip Beale
Journal:  J Inorg Biochem       Date:  2004-11       Impact factor: 4.155

4.  Synthesis, Structure, Biological Activity, and DNA Binding of Platinum(II) Complexes of the Type trans-[PtCl(2)(NH(3))L] (L = Planar Nitrogen Base). Effect of L and Cis/Trans Isomerism on Sequence Specificity and Unwinding Properties Observed in Globally Platinated DNA.

Authors:  Ulrich Bierbach; Yun Qu; Trevor W. Hambley; John Peroutka; Holly L. Nguyen; Marijo Doedee; Nicholas Farrell
Journal:  Inorg Chem       Date:  1999-07-26       Impact factor: 5.165

5.  Studies on activities, cell uptake and DNA binding of four trans-planaramineplatinum(II) complexes of the form: trans-PtL(NH3)Cl2, where L=2-hydroxypyridine, imidazole, 3-hydroxypyridine and imidazo(1,2-alpha)pyridine.

Authors:  Fazlul Huq; Jun Qing Yu; Hassan Daghriri; Philip Beale
Journal:  J Inorg Biochem       Date:  2004-08       Impact factor: 4.155

6.  Activation of the trans geometry in platinum antitumor complexes: a survey of the cytotoxicity of trans complexes containing planar ligands in murine L1210 and human tumor panels and studies on their mechanism of action.

Authors:  N Farrell; L R Kelland; J D Roberts; M Van Beusichem
Journal:  Cancer Res       Date:  1992-09-15       Impact factor: 12.701

  6 in total

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