Literature DB >> 21754617

Diaqua-(2,2'-bipyridine-6,6'-dicarboxyl-ato)nickel(II).

Shui Hu, Shipeng Wen, Huai-Ming Hu, Li Liu.   

Abstract

In the title compound, [Ni(C(12)H(6)N(2)O(4))(H(2)O)(2)], the Ni(II) atom (site symmetry 2) displays a distorted cis-NiN(2)O(4) octa-hedral coordination geometry with two N atoms and two O atoms of the tetra-dentate 2,2'-bipyridine-6,6'-dicarboxyl-ate ligand in the equatorial plane and two water mol-ecules in axial positions. The complete dianionic ligand is generated by crystallographic twofold symmetry. In the crystal, a two-dimensional supra-molecular structure parallel to (001) is formed through O-H⋯O hydrogen-bond inter-actions between the coordinated water mol-ecules and the O atoms of nearby carboxyl-ate groups.

Entities:  

Year:  2011        PMID: 21754617      PMCID: PMC3120548          DOI: 10.1107/S1600536811016400

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For transition metal complexes with the title ligand, see: Knight et al. (2006 ▶); Duan et al. (2009 ▶); Wang et al. (2009 ▶). For lanthanide metal complexes with the title ligand, see: Bunzli et al. (2000 ▶); Wang et al. (2010 ▶).

Experimental

Crystal data

[Ni(C12H6N2O4)(H2O)2] M = 336.93 Orthorhombic, a = 7.1056 (9) Å b = 11.3608 (15) Å c = 15.3334 (19) Å V = 1237.8 (3) Å3 Z = 4 Mo Kα radiation μ = 1.60 mm−1 T = 296 K 0.24 × 0.16 × 0.10 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.766, T max = 0.857 6269 measured reflections 1274 independent reflections 1098 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.082 S = 1.06 1274 reflections 102 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.48 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811016400/hb5864sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811016400/hb5864Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811016400/hb5864Isup3.cdx Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C12H6N2O4)(H2O)2]F(000) = 688
Mr = 336.93Dx = 1.808 Mg m3
Orthorhombic, PccnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ab 2acCell parameters from 1650 reflections
a = 7.1056 (9) Åθ = 3.2–25.2°
b = 11.3608 (15) ŵ = 1.60 mm1
c = 15.3334 (19) ÅT = 296 K
V = 1237.8 (3) Å3Block, green
Z = 40.24 × 0.16 × 0.10 mm
Bruker APEXII CCD diffractometer1274 independent reflections
Radiation source: fine-focus sealed tube1098 reflections with I > 2σ(I)
graphiteRint = 0.036
φ and ω scansθmax = 26.4°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −8→8
Tmin = 0.766, Tmax = 0.857k = −13→14
6269 measured reflectionsl = −10→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.082H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0405P)2 + 0.5888P] where P = (Fo2 + 2Fc2)/3
1274 reflections(Δ/σ)max < 0.001
102 parametersΔρmax = 0.48 e Å3
2 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.25000.75000.16327 (3)0.02540 (16)
N10.0931 (3)0.80137 (16)0.06211 (12)0.0285 (4)
O10.0167 (2)0.83346 (15)0.22531 (11)0.0360 (4)
O2−0.2446 (2)0.93408 (18)0.19595 (16)0.0517 (6)
C1−0.1035 (3)0.8756 (2)0.17424 (18)0.0348 (6)
C2−0.0683 (4)0.8569 (2)0.07707 (17)0.0332 (6)
C3−0.1808 (4)0.8936 (2)0.0083 (2)0.0464 (7)
H3−0.29340.93320.01820.056*
C4−0.1204 (5)0.8695 (3)−0.0750 (2)0.0563 (9)
H4−0.19510.8915−0.12210.068*
C50.0486 (5)0.8132 (2)−0.09017 (18)0.0506 (8)
H50.08940.7982−0.14670.061*
C60.1564 (4)0.7796 (2)−0.01856 (16)0.0348 (6)
O30.1216 (2)0.58888 (16)0.17647 (13)0.0380 (5)
H3A0.009 (3)0.584 (3)0.1803 (18)0.046*
H3B0.169 (4)0.545 (2)0.2135 (15)0.046*
U11U22U33U12U13U23
Ni10.0254 (3)0.0293 (3)0.0215 (2)0.00250 (16)0.0000.000
N10.0341 (11)0.0256 (10)0.0260 (11)−0.0004 (9)−0.0053 (9)−0.0005 (8)
O10.0336 (9)0.0402 (10)0.0343 (10)0.0040 (8)0.0046 (8)−0.0040 (8)
O20.0263 (10)0.0466 (12)0.0821 (15)0.0055 (8)−0.0004 (9)−0.0232 (11)
C10.0248 (12)0.0269 (12)0.0526 (17)−0.0047 (10)0.0005 (12)−0.0078 (11)
C20.0316 (13)0.0217 (12)0.0464 (16)−0.0021 (10)−0.0109 (11)−0.0021 (10)
C30.0437 (15)0.0291 (14)0.067 (2)−0.0016 (11)−0.0276 (15)0.0050 (13)
C40.073 (2)0.0378 (16)0.059 (2)−0.0073 (15)−0.0407 (18)0.0134 (14)
C50.085 (2)0.0380 (16)0.0289 (15)−0.0094 (16)−0.0177 (15)0.0061 (11)
C60.0530 (17)0.0261 (12)0.0252 (12)−0.0045 (11)−0.0073 (12)0.0018 (9)
O30.0259 (9)0.0364 (10)0.0519 (12)0.0001 (8)0.0044 (9)0.0117 (8)
Ni1—N1i1.9975 (19)C2—C31.387 (4)
Ni1—N11.9975 (19)C3—C41.375 (5)
Ni1—O3i2.0553 (18)C3—H30.9300
Ni1—O32.0553 (18)C4—C51.381 (5)
Ni1—O1i2.1335 (16)C4—H40.9300
Ni1—O12.1335 (16)C5—C61.392 (4)
N1—C21.329 (3)C5—H50.9300
N1—C61.339 (3)C6—C6i1.491 (5)
O1—C11.254 (3)O3—H3A0.806 (18)
O2—C11.247 (3)O3—H3B0.827 (17)
C1—C21.526 (4)
N1i—Ni1—N178.11 (11)O2—C1—C2117.8 (2)
N1i—Ni1—O3i95.10 (8)O1—C1—C2116.4 (2)
N1—Ni1—O3i93.67 (8)N1—C2—C3120.6 (3)
N1i—Ni1—O393.67 (8)N1—C2—C1112.1 (2)
N1—Ni1—O395.10 (8)C3—C2—C1127.3 (3)
O3i—Ni1—O3168.70 (11)C4—C3—C2117.8 (3)
N1i—Ni1—O1i77.45 (7)C4—C3—H3121.1
N1—Ni1—O1i155.48 (8)C2—C3—H3121.1
O3i—Ni1—O1i90.40 (7)C3—C4—C5121.4 (3)
O3—Ni1—O1i84.56 (7)C3—C4—H4119.3
N1i—Ni1—O1155.48 (8)C5—C4—H4119.3
N1—Ni1—O177.45 (7)C4—C5—C6118.2 (3)
O3i—Ni1—O184.56 (7)C4—C5—H5120.9
O3—Ni1—O190.40 (7)C6—C5—H5120.9
O1i—Ni1—O1127.04 (9)N1—C6—C5119.5 (3)
C2—N1—C6122.5 (2)N1—C6—C6i112.53 (14)
C2—N1—Ni1119.11 (17)C5—C6—C6i127.93 (19)
C6—N1—Ni1118.41 (17)Ni1—O3—H3A121 (2)
C1—O1—Ni1114.88 (15)Ni1—O3—H3B115 (2)
O2—C1—O1125.7 (3)H3A—O3—H3B108 (3)
N1i—Ni1—N1—C2−178.6 (2)Ni1—N1—C2—C3−179.86 (17)
O3i—Ni1—N1—C2−84.19 (18)C6—N1—C2—C1−177.4 (2)
O3—Ni1—N1—C288.68 (18)Ni1—N1—C2—C11.8 (3)
O1i—Ni1—N1—C2176.75 (16)O2—C1—C2—N1175.2 (2)
O1—Ni1—N1—C2−0.59 (17)O1—C1—C2—N1−2.6 (3)
N1i—Ni1—N1—C60.53 (13)O2—C1—C2—C3−3.1 (4)
O3i—Ni1—N1—C694.98 (18)O1—C1—C2—C3179.2 (2)
O3—Ni1—N1—C6−92.15 (18)N1—C2—C3—C40.6 (4)
O1i—Ni1—N1—C6−4.1 (3)C1—C2—C3—C4178.7 (2)
O1—Ni1—N1—C6178.57 (19)C2—C3—C4—C5−1.5 (4)
N1i—Ni1—O1—C13.7 (3)C3—C4—C5—C61.0 (4)
N1—Ni1—O1—C1−0.96 (16)C2—N1—C6—C5−1.6 (4)
O3i—Ni1—O1—C194.04 (17)Ni1—N1—C6—C5179.24 (19)
O3—Ni1—O1—C1−96.09 (17)C2—N1—C6—C6i177.8 (2)
O1i—Ni1—O1—C1−179.58 (17)Ni1—N1—C6—C6i−1.4 (3)
Ni1—O1—C1—O2−175.4 (2)C4—C5—C6—N10.6 (4)
Ni1—O1—C1—C22.1 (3)C4—C5—C6—C6i−178.7 (3)
C6—N1—C2—C31.0 (4)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O2ii0.81 (2)1.90 (2)2.708 (2)176 (3)
O3—H3B···O2iii0.83 (2)1.95 (2)2.772 (3)172 (3)
Table 1

Selected bond lengths (Å)

Ni1—N11.9975 (19)
Ni1—O32.0553 (18)
Ni1—O12.1335 (16)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3A⋯O2i0.81 (2)1.90 (2)2.708 (2)176 (3)
O3—H3B⋯O2ii0.83 (2)1.95 (2)2.772 (3)172 (3)

Symmetry codes: (i) ; (ii) .

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