Literature DB >> 21754605

Bis[N-(2-furylmeth-yl)ethane-1,2-di-amine]-bis-(perchlorato)copper(II).

Wei Xiao, Shi-Rong Li, Hong Zhou, Zhi-Quan Pan, Qimao Huang.   

Abstract

In the title complex, [Cu(ClO(4))(2)(C(7)H(12)N(2)O)(2)], the Cu(II) ion lies on a crystallographic inversion centre. The coordination sphere around Cu(II) ion can be described as tetragonally distorted octa-hedral with two perchlorate O atoms occupying the apical positions and four N atoms from two N(1)-(2-furyl-methyl)ethane-1,2-diamine ligands in the basal plane.

Entities:  

Year:  2011        PMID: 21754605      PMCID: PMC3120411          DOI: 10.1107/S1600536811012232

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For copper complexs with polyamine ligands, see: Souza et al. (2009 ▶); Patra et al. (2007 ▶); Zhou et al. (2009 ▶). For the synthesis, see: Wang et al. (2009 ▶).

Experimental

Crystal data

[Cu(ClO4)2(C7H12N2O)2] M = 542.81 Monoclinic, a = 9.736 (8) Å b = 11.899 (9) Å c = 9.466 (7) Å β = 94.227 (12)° V = 1093.6 (14) Å3 Z = 2 Mo Kα radiation μ = 1.30 mm−1 T = 291 K 0.28 × 0.24 × 0.22 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.712, T max = 0.763 5510 measured reflections 1914 independent reflections 1589 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.112 S = 1.07 1914 reflections 142 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.70 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811012232/nk2094sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811012232/nk2094Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(ClO4)2(C7H12N2O)2]F(000) = 558
Mr = 542.81Dx = 1.648 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1812 reflections
a = 9.736 (8) Åθ = 2.7–22.6°
b = 11.899 (9) ŵ = 1.30 mm1
c = 9.466 (7) ÅT = 291 K
β = 94.227 (12)°Block, blue
V = 1093.6 (14) Å30.28 × 0.24 × 0.22 mm
Z = 2
Bruker SMART APEX CCD diffractometer1914 independent reflections
Radiation source: sealed tube1589 reflections with I > 2σ(I)
graphiteRint = 0.039
ω scansθmax = 25.1°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→11
Tmin = 0.712, Tmax = 0.763k = −14→12
5510 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.112H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.05P)2 + 1.33P] where P = (Fo2 + 2Fc2)/3
1914 reflections(Δ/σ)max < 0.001
142 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.70 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4721 (5)0.3096 (4)0.7859 (4)0.0440 (10)
H10.38540.27810.76610.053*
C20.5127 (4)0.3583 (4)0.9007 (5)0.0421 (10)
H20.46510.36090.98230.051*
C30.6429 (5)0.4080 (4)0.8837 (5)0.0476 (11)
H30.69390.45310.94840.057*
C40.6766 (4)0.3770 (4)0.7570 (4)0.0404 (10)
C50.8085 (4)0.3823 (4)0.6885 (4)0.0417 (10)
H5A0.88310.39060.76160.050*
H5B0.82200.31160.64050.050*
C60.7106 (5)0.4843 (4)0.4717 (5)0.0468 (11)
H6A0.62590.44920.49700.056*
H6B0.69240.56340.45360.056*
C70.7570 (5)0.4316 (4)0.3458 (5)0.0466 (11)
H7A0.69090.44620.26620.056*
H7B0.76210.35090.35990.056*
Cl10.90322 (11)0.80490 (9)0.47487 (11)0.0422 (3)
Cu11.00000.50000.50000.0320 (2)
N10.8171 (4)0.4721 (3)0.5882 (4)0.0465 (9)
H1B0.81990.53680.63770.056*
N20.8951 (4)0.4749 (3)0.3128 (4)0.0451 (9)
H2A0.88640.53960.26380.054*
H2B0.93870.42450.26110.054*
O10.5768 (3)0.3107 (3)0.6947 (3)0.0493 (8)
O20.9102 (3)0.6962 (3)0.4956 (3)0.0493 (8)
O30.8334 (3)0.8393 (2)0.3418 (3)0.0476 (8)
O41.0257 (3)0.8481 (2)0.4616 (3)0.0462 (7)
O50.8431 (3)0.8640 (2)0.5750 (3)0.0446 (7)
U11U22U33U12U13U23
C10.044 (3)0.046 (2)0.042 (2)−0.018 (2)0.0009 (19)0.004 (2)
C20.041 (2)0.045 (2)0.042 (2)0.0089 (19)0.0103 (19)0.0034 (19)
C30.048 (3)0.049 (3)0.048 (2)−0.015 (2)0.015 (2)−0.009 (2)
C40.035 (2)0.057 (3)0.0306 (19)−0.0051 (19)0.0070 (17)0.0011 (18)
C50.042 (2)0.041 (2)0.043 (2)0.0078 (19)0.0053 (19)0.0011 (18)
C60.045 (3)0.051 (3)0.046 (2)−0.006 (2)0.012 (2)0.019 (2)
C70.045 (3)0.048 (3)0.044 (2)−0.012 (2)−0.0140 (19)0.012 (2)
Cl10.0397 (6)0.0441 (6)0.0442 (6)0.0033 (4)0.0113 (4)−0.0060 (4)
Cu10.0324 (4)0.0315 (4)0.0333 (4)−0.0005 (3)0.0110 (3)0.0024 (3)
N10.043 (2)0.050 (2)0.048 (2)−0.0093 (17)0.0127 (17)0.0170 (17)
N20.043 (2)0.043 (2)0.048 (2)−0.0126 (16)−0.0073 (17)−0.0004 (16)
O10.053 (2)0.0482 (17)0.0475 (17)−0.0162 (15)0.0109 (15)−0.0149 (14)
O20.0527 (19)0.0448 (18)0.0530 (18)0.0136 (14)0.0218 (15)0.0132 (14)
O30.0467 (17)0.0419 (17)0.0529 (18)−0.0135 (14)−0.0053 (14)0.0056 (14)
O40.0469 (18)0.0466 (17)0.0474 (16)−0.0021 (14)0.0193 (14)0.0084 (14)
O50.0430 (17)0.0442 (16)0.0467 (16)0.0178 (14)0.0040 (13)−0.0015 (13)
C1—C21.268 (6)C6—H6B0.9700
C1—O11.384 (5)C7—N21.494 (6)
C1—H10.9300C7—H7A0.9700
C2—C31.419 (6)C7—H7B0.9700
C2—H20.9300Cl1—O21.309 (3)
C3—C41.319 (6)Cl1—O41.313 (3)
C3—H30.9300Cl1—O51.348 (3)
C4—O11.352 (5)Cl1—O31.446 (3)
C4—C51.482 (6)Cu1—N22.001 (4)
C5—N11.436 (5)Cu1—N2i2.001 (4)
C5—H5A0.9700Cu1—N12.049 (4)
C5—H5B0.9700Cu1—N1i2.049 (4)
C6—C71.448 (6)N1—H1B0.9000
C6—N11.465 (6)N2—H2A0.9000
C6—H6A0.9700N2—H2B0.9000
C2—C1—O1109.5 (4)N2—C7—H7B109.4
C2—C1—H1125.3H7A—C7—H7B108.0
O1—C1—H1125.3O2—Cl1—O4111.3 (2)
C1—C2—C3108.5 (4)O2—Cl1—O5115.5 (2)
C1—C2—H2125.8O4—Cl1—O5107.9 (2)
C3—C2—H2125.8O2—Cl1—O3115.2 (2)
C4—C3—C2105.7 (4)O4—Cl1—O3100.24 (19)
C4—C3—H3127.1O5—Cl1—O3105.3 (2)
C2—C3—H3127.1N2—Cu1—N2i180.000 (1)
C3—C4—O1109.9 (4)N2—Cu1—N186.25 (16)
C3—C4—C5131.9 (4)N2i—Cu1—N193.75 (16)
O1—C4—C5116.9 (3)N2—Cu1—N1i93.75 (16)
N1—C5—C4114.6 (4)N2i—Cu1—N1i86.25 (16)
N1—C5—H5A108.6N1—Cu1—N1i180.0
C4—C5—H5A108.6C5—N1—C6120.0 (4)
N1—C5—H5B108.6C5—N1—Cu1119.0 (3)
C4—C5—H5B108.6C6—N1—Cu1105.4 (3)
H5A—C5—H5B107.6C5—N1—H1B107.1
C7—C6—N1109.3 (4)C6—N1—H1B107.4
C7—C6—H6A109.8Cu1—N1—H1B94.6
N1—C6—H6A109.8C7—N2—Cu1106.0 (3)
C7—C6—H6B109.8C7—N2—H2A110.5
N1—C6—H6B109.8Cu1—N2—H2A110.5
H6A—C6—H6B108.3C7—N2—H2B110.5
C6—C7—N2111.2 (4)Cu1—N2—H2B110.5
C6—C7—H7A109.4H2A—N2—H2B108.7
N2—C7—H7A109.4C4—O1—C1105.8 (3)
C6—C7—H7B109.4
O1—C1—C2—C37.7 (5)N2—Cu1—N1—C5121.4 (3)
C1—C2—C3—C4−4.6 (5)N2i—Cu1—N1—C5−58.6 (3)
C2—C3—C4—O1−0.5 (5)N2—Cu1—N1—C6−16.7 (3)
C2—C3—C4—C5−166.5 (5)N2i—Cu1—N1—C6163.3 (3)
C3—C4—C5—N1−102.5 (6)C6—C7—N2—Cu136.2 (4)
O1—C4—C5—N192.3 (5)N1—Cu1—N2—C7−9.8 (3)
N1—C6—C7—N2−53.2 (5)N1i—Cu1—N2—C7170.2 (3)
C4—C5—N1—C6−54.1 (5)C3—C4—O1—C14.9 (5)
C4—C5—N1—Cu1173.9 (3)C5—C4—O1—C1173.3 (4)
C7—C6—N1—C5−96.6 (5)C2—C1—O1—C4−7.9 (5)
C7—C6—N1—Cu141.1 (4)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  DNA photonuclease activity of four new copper(II) complexes under UV and red light: theoretical/experimental correlations with active species generation.

Authors:  Bernardo de Souza; Adailton J Bortoluzzi; Tiago Bortolotto; Franciele Luane Fischer; Hernán Terenzi; Dalva E C Ferreira; William R Rocha; Ademir Neves
Journal:  Dalton Trans       Date:  2009-12-23       Impact factor: 4.390

3.  Synthesis, crystal structure, DNA binding and photo-induced DNA cleavage activity of (S-methyl-L-cysteine)copper(II) complexes of heterocyclic bases.

Authors:  Ashis K Patra; Munirathinam Nethaji; Akhil R Chakravarty
Journal:  J Inorg Biochem       Date:  2006-09-28       Impact factor: 4.155

  3 in total
  1 in total

1.  Chlorido[N,N'-dibenzyl-N,N'-bis-(pyridin-2-ylmeth-yl)ethane-1,2-diamine]-copper(II) perchlorate methanol monosolvate.

Authors:  Hui-Ting Song; Jia-Wei Mao; Ming Liu; Zhi-Quan Pan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-28
  1 in total

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